View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1944_high_55 (Length: 226)
Name: NF1944_high_55
Description: NF1944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1944_high_55 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 40805172 - 40805398
Alignment:
| Q |
1 |
gcttaaggcaattgcttaatgattatagaagagatacaatcataaatgcaatcaaaagtactgcaaataacctaagagataaatgctctatcttgtgcat |
100 |
Q |
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| T |
40805172 |
gcttaaggcaattgcttaatgattatagaagagatacaatcataaatgcaatcaaaagtactgcaaataacctaagagataaatgctctatcttgtgcat |
40805271 |
T |
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| Q |
101 |
gagcattgtcatttgatgatcatctagtaaaactacttgataatttttgtac-attccaacaaagattgcacaagaaatccatgtgaatgtgatatgagc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40805272 |
gagcattgtcatttgatgatcatctagtaaaactacttgataatttttgtacaattccaacaaagattgcacaagaaatccatgtgaatgtgatatgagc |
40805371 |
T |
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| Q |
200 |
aataaatttaaagaaaaatattacctt |
226 |
Q |
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||||||||||||||||||||||||||| |
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| T |
40805372 |
aataaatttaaagaaaaatattacctt |
40805398 |
T |
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