View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1944_high_7 (Length: 535)
Name: NF1944_high_7
Description: NF1944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1944_high_7 |
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| [»] scaffold1319 (1 HSPs) |
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Alignment Details
Target: scaffold1319 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: scaffold1319
Description:
Target: scaffold1319; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 19 - 520
Target Start/End: Complemental strand, 1114 - 607
Alignment:
| Q |
19 |
tttgtggtgttgtttggtgttttatcttctcgctagggatttgtttcctcttttatatttttgttgtttggtgtgttggttaccctctatggtcgttgta |
118 |
Q |
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| T |
1114 |
tttgtggtgttgtttggtgttttatcctctcgctagggatttgtttcctcttttatatttttgttgtttggtg--------accctctatggtcgttgta |
1023 |
T |
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| Q |
119 |
tcaggagctttctgggtgttcggtgttttggcgttttgctatgcccgttctttttatatgtgtatatatactatttgccattnnnnnnnntatatgttgt |
218 |
Q |
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| T |
1022 |
tcaggagctttctgggtgttcggtgttttggcgttttgccatactcgtt-tttttatatgtgtatatatactatttgccatttaaaaaaatatatgttgt |
924 |
T |
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| Q |
219 |
caaaagtgttatttctttttggagatccaagtcgcaattttcgcaaagttagaatgcagttagaacaatatattttttaaactttagatatcaaatctaa |
318 |
Q |
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| T |
923 |
caaaagtgttatttctttt-ggagatccaagtcgcaatttttgcaaagttagaatgcatttagaccaatatattttttcaactttaaatatcaaatctaa |
825 |
T |
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| Q |
319 |
aacgaacttaagtcaaagaataataagtaatgcaaactctccataataaaatataagagaaaggtacatgtatttatttgactcaaatttagatcaa--- |
415 |
Q |
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| T |
824 |
tatgaacttaagtcaaagaataataagtaatgcaaactctccataataaaatataagagaaaggtacatgt----atttggctcaaatttagatcaaata |
729 |
T |
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| Q |
416 |
-----------------atatttatttctagagaaaatattaaattcaatttgattatacatcaattaaatacacacctgaatagcaaagcttccaactc |
498 |
Q |
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| T |
728 |
catatagctttttgtttatatttatttctagagaaaatgttaaattcaatttgattatacatcaattaaatacaaacctgaatagcaaagcttccaactc |
629 |
T |
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| Q |
499 |
caccagcacctcccaagacaag |
520 |
Q |
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| T |
628 |
caccagcacctcccaagacaag |
607 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 101 - 177
Target Start/End: Complemental strand, 31228109 - 31228032
Alignment:
| Q |
101 |
ccctctatggtcgttgtatcaggagctttctgggtgttcggtgttttggcgttttgctatgcccgttc-tttttatat |
177 |
Q |
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| T |
31228109 |
ccctatatggtcgttgtaactggagctttctgagtgatcggtgttttggtgttttgccatactcgttcatttttatat |
31228032 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 147
Target Start/End: Complemental strand, 19713272 - 19713227
Alignment:
| Q |
102 |
cctctatggtcgttgtatcaggagctttctgggtgttcggtgtttt |
147 |
Q |
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| T |
19713272 |
cctctatggacgttgtatctagagctttctgggtgatcggtgtttt |
19713227 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 13319805 - 13319849
Alignment:
| Q |
37 |
gttttatcttctcgctagggatttgtttcctcttttatatttttgt |
82 |
Q |
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| T |
13319805 |
gttttctcttctcgctagggatttg-ttccccttttatatttttgt |
13319849 |
T |
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