View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1944_high_8 (Length: 512)
Name: NF1944_high_8
Description: NF1944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1944_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 54 - 500
Target Start/End: Original strand, 37587874 - 37588321
Alignment:
| Q |
54 |
actttcacatgtttccaattagatacgttactgattttgagttagaacttgatttccaattagataccattactttctccatacattggtaattgctagc |
153 |
Q |
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| T |
37587874 |
actttcacatgtttccaattagatacgttactgattttgagttagaacttgatttccaattagataccattactttctccatacattggtaattgctagc |
37587973 |
T |
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| Q |
154 |
gatatccgtatactgattttgagttagaaaactctactccccttgttttatgactaactaatactttttgaacgattttccttctcttcggccaaatttg |
253 |
Q |
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| T |
37587974 |
gatatccatatactgattttgagttagaaaactctactccgcttgttttatgactaactaatactttttgaacgattttccttcttttcggccaaatctg |
37588073 |
T |
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| Q |
254 |
gaatactagtattttttgactc-actcttttgctagaaacctaacttcattgtgttttttatcctttgagatttgcctttgatgatagaaacaacttcta |
352 |
Q |
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| T |
37588074 |
gaatactagtattttttgactctaatcttttgctagaaacctaacttcattgtgttttttatcctttgagatttgcctttgatgatagaaacaacttcta |
37588173 |
T |
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| Q |
353 |
tattgcctttgatttactcttacccttcttttattttatgctgagttcaactttttacaggaggaaatacactgttattgatagtttctgccatttttct |
452 |
Q |
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| T |
37588174 |
tattgcctttgatttactcttacccttcttttattttatggtgagtttaactttttaccggaagaaatacactgttattgatagtttctgccatttttct |
37588273 |
T |
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| Q |
453 |
tctactgtcagatttctatctattgtgaacatatagtttttcatctca |
500 |
Q |
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| T |
37588274 |
tctactgtcagatttctatctattgtgaacatatagtttttcatctca |
37588321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 428 - 484
Target Start/End: Original strand, 33722010 - 33722065
Alignment:
| Q |
428 |
tattgatagtttctgccatttttcttctactgtcagatttctatctattgtgaacat |
484 |
Q |
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| T |
33722010 |
tattgatagtttctgctatttttctttta-tgtcagatttctatctattgtgaacat |
33722065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 206 - 269
Target Start/End: Original strand, 37583191 - 37583254
Alignment:
| Q |
206 |
actaactaatactttttgaacgattttccttctcttcggccaaatttggaatactagtattttt |
269 |
Q |
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| T |
37583191 |
actagctaatacttattgaaagattttccttcttgtctgccaaatttggaatactagtattttt |
37583254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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