View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1944_low_1 (Length: 926)

Name: NF1944_low_1
Description: NF1944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1944_low_1
NF1944_low_1
[»] chr2 (41 HSPs)
chr2 (16-707)||(33161009-33161702)
chr2 (777-917)||(33161769-33161909)
chr2 (776-919)||(32766217-32766361)
chr2 (776-919)||(31091506-31091649)
chr2 (796-919)||(17466807-17466930)
chr2 (812-919)||(17330209-17330316)
chr2 (785-919)||(32764948-32765081)
chr2 (785-909)||(38853765-38853889)
chr2 (820-919)||(14704051-14704149)
chr2 (774-916)||(31090163-31090305)
chr2 (785-919)||(34037652-34037786)
chr2 (788-902)||(34582666-34582780)
chr2 (785-912)||(24459432-24459559)
chr2 (785-919)||(2910110-2910244)
chr2 (776-916)||(7412093-7412233)
chr2 (785-909)||(38854799-38854923)
chr2 (773-917)||(40000315-40000459)
chr2 (792-919)||(15441950-15442077)
chr2 (794-912)||(5914323-5914441)
chr2 (776-912)||(5914978-5915114)
chr2 (827-919)||(17466093-17466185)
chr2 (808-919)||(21733750-21733864)
chr2 (785-916)||(33163440-33163572)
chr2 (820-919)||(7073684-7073783)
chr2 (818-919)||(31814323-31814424)
chr2 (795-884)||(21732132-21732216)
chr2 (785-909)||(31443234-31443357)
chr2 (796-919)||(12746180-12746303)
chr2 (814-916)||(37607141-37607243)
chr2 (805-919)||(38856346-38856459)
chr2 (827-919)||(38984967-38985060)
chr2 (813-885)||(8420051-8420123)
chr2 (795-858)||(11985711-11985774)
chr2 (776-917)||(39016364-39016503)
chr2 (809-860)||(43380614-43380665)
chr2 (773-915)||(39257004-39257140)
chr2 (798-841)||(14887555-14887598)
chr2 (812-858)||(8420961-8421007)
chr2 (785-847)||(39015015-39015077)
chr2 (777-854)||(12003569-12003646)
chr2 (624-661)||(27550667-27550704)
[»] chr3 (33 HSPs)
chr3 (785-919)||(20464079-20464213)
chr3 (776-918)||(52318297-52318439)
chr3 (776-919)||(48572986-48573129)
chr3 (776-897)||(17700519-17700640)
chr3 (776-912)||(47118037-47118173)
chr3 (776-919)||(36278953-36279096)
chr3 (785-909)||(19114543-19114667)
chr3 (776-912)||(33428421-33428557)
chr3 (776-912)||(45600925-45601060)
chr3 (785-897)||(17701920-17702032)
chr3 (796-912)||(47075337-47075453)
chr3 (776-919)||(55388074-55388217)
chr3 (796-912)||(19115133-19115248)
chr3 (820-919)||(48574438-48574537)
chr3 (776-917)||(2591628-2591769)
chr3 (814-919)||(36280296-36280401)
chr3 (776-891)||(2592014-2592129)
chr3 (812-919)||(53959079-53959186)
chr3 (785-919)||(50753827-50753961)
chr3 (795-919)||(612234-612358)
chr3 (785-919)||(52316989-52317123)
chr3 (814-919)||(3671077-3671182)
chr3 (807-896)||(11773053-11773142)
chr3 (795-919)||(34263825-34263949)
chr3 (807-919)||(36827454-36827566)
chr3 (795-847)||(19331128-19331180)
chr3 (804-860)||(47427889-47427945)
chr3 (808-847)||(39497240-39497279)
chr3 (776-919)||(55389448-55389591)
chr3 (820-914)||(48808411-48808505)
chr3 (810-848)||(49261584-49261622)
chr3 (624-661)||(30362655-30362692)
chr3 (624-661)||(38698631-38698668)
[»] chr4 (30 HSPs)
chr4 (776-912)||(53771035-53771171)
chr4 (777-919)||(39868924-39869064)
chr4 (797-909)||(44158526-44158638)
chr4 (800-917)||(4701790-4701907)
chr4 (776-912)||(48740006-48740142)
chr4 (776-919)||(4703196-4703339)
chr4 (795-919)||(47878463-47878587)
chr4 (796-919)||(21623096-21623219)
chr4 (812-919)||(42278086-42278193)
chr4 (776-860)||(19051269-19051353)
chr4 (787-919)||(26170652-26170784)
chr4 (785-916)||(47874574-47874704)
chr4 (785-912)||(53770343-53770470)
chr4 (821-919)||(21621869-21621967)
chr4 (812-909)||(26172931-26173028)
chr4 (776-856)||(31844723-31844803)
chr4 (835-919)||(19050298-19050382)
chr4 (826-909)||(32244677-32244760)
chr4 (821-919)||(50694795-50694893)
chr4 (795-909)||(24746064-24746176)
chr4 (824-919)||(24753540-24753635)
chr4 (816-919)||(36453785-36453888)
chr4 (785-856)||(42391930-42392001)
chr4 (785-919)||(39870653-39870787)
chr4 (798-843)||(6317742-6317787)
chr4 (845-890)||(22674001-22674046)
chr4 (798-882)||(54574448-54574532)
chr4 (852-919)||(56041041-56041108)
chr4 (785-846)||(11269900-11269961)
chr4 (624-661)||(34073956-34073993)
[»] chr7 (47 HSPs)
chr7 (776-919)||(7258276-7258419)
chr7 (804-919)||(12220052-12220166)
chr7 (785-919)||(12223678-12223812)
chr7 (777-919)||(10899052-10899194)
chr7 (776-919)||(44333140-44333281)
chr7 (776-919)||(8048763-8048906)
chr7 (785-919)||(39708113-39708247)
chr7 (785-919)||(43457467-43457601)
chr7 (776-917)||(48647424-48647565)
chr7 (772-868)||(34704906-34705002)
chr7 (773-917)||(46286501-46286645)
chr7 (776-919)||(48777257-48777401)
chr7 (804-919)||(13578300-13578414)
chr7 (776-919)||(19433913-19434056)
chr7 (813-919)||(30924988-30925093)
chr7 (785-919)||(48646059-48646193)
chr7 (802-919)||(7509450-7509567)
chr7 (812-912)||(8375569-8375669)
chr7 (795-919)||(35727719-35727842)
chr7 (777-900)||(8374916-8375039)
chr7 (796-919)||(42477402-42477524)
chr7 (807-916)||(34888905-34889014)
chr7 (807-919)||(7259663-7259775)
chr7 (825-909)||(8879532-8879616)
chr7 (823-919)||(44529076-44529172)
chr7 (804-919)||(48788651-48788766)
chr7 (776-919)||(5930112-5930254)
chr7 (776-919)||(44334429-44334571)
chr7 (785-902)||(33607619-33607736)
chr7 (794-914)||(24287499-24287619)
chr7 (807-919)||(35729065-35729177)
chr7 (828-919)||(45584475-45584566)
chr7 (785-854)||(21062827-21062896)
chr7 (822-914)||(44530595-44530687)
chr7 (791-853)||(24844589-24844651)
chr7 (831-917)||(25621702-25621788)
chr7 (865-919)||(48249648-48249702)
chr7 (818-919)||(32793214-32793315)
chr7 (818-919)||(6680512-6680614)
chr7 (791-848)||(2677836-2677893)
chr7 (812-919)||(24288845-24288952)
chr7 (776-883)||(45583685-45583792)
chr7 (796-886)||(385623-385713)
chr7 (865-919)||(33060900-33060954)
chr7 (624-661)||(17961712-17961749)
chr7 (619-660)||(21736430-21736471)
chr7 (777-902)||(34710423-34710548)
[»] chr5 (25 HSPs)
chr5 (776-919)||(21069290-21069433)
chr5 (796-912)||(16611749-16611865)
chr5 (794-919)||(25590450-25590574)
chr5 (776-919)||(9538028-9538171)
chr5 (807-917)||(546017-546127)
chr5 (773-919)||(9537021-9537166)
chr5 (807-919)||(4592893-4593005)
chr5 (795-919)||(28591092-28591217)
chr5 (776-919)||(2464670-2464813)
chr5 (776-919)||(8074452-8074594)
chr5 (798-919)||(32640311-32640432)
chr5 (776-918)||(2466753-2466896)
chr5 (804-919)||(19182979-19183094)
chr5 (807-919)||(32641705-32641817)
chr5 (785-872)||(18400200-18400287)
chr5 (813-919)||(19186199-19186305)
chr5 (785-914)||(18004648-18004777)
chr5 (776-919)||(14891126-14891265)
chr5 (785-919)||(16979002-16979136)
chr5 (820-917)||(40612640-40612737)
chr5 (795-919)||(544669-544792)
chr5 (796-919)||(8075812-8075935)
chr5 (624-661)||(7180714-7180751)
chr5 (812-845)||(13651173-13651206)
chr5 (624-661)||(27551716-27551753)
[»] chr8 (33 HSPs)
chr8 (790-919)||(5965421-5965550)
chr8 (776-919)||(32898424-32898567)
chr8 (807-919)||(35177427-35177539)
chr8 (776-919)||(35178784-35178926)
chr8 (808-919)||(5738002-5738113)
chr8 (795-919)||(28005363-28005487)
chr8 (795-919)||(28062666-28062790)
chr8 (785-919)||(1952949-1953082)
chr8 (814-919)||(28619028-28619133)
chr8 (791-916)||(31075272-31075396)
chr8 (776-919)||(10407563-10407706)
chr8 (805-919)||(28524787-28524902)
chr8 (785-919)||(30134576-30134710)
chr8 (792-917)||(28006576-28006701)
chr8 (792-917)||(28063879-28064004)
chr8 (822-907)||(28619536-28619621)
chr8 (785-919)||(31074004-31074138)
chr8 (826-919)||(5736893-5736986)
chr8 (818-919)||(45476205-45476306)
chr8 (776-860)||(41753999-41754083)
chr8 (795-883)||(41754810-41754898)
chr8 (796-899)||(12637757-12637860)
chr8 (796-914)||(9625211-9625329)
chr8 (791-907)||(24198950-24199066)
chr8 (826-880)||(41121160-41121214)
chr8 (804-916)||(33314890-33314999)
chr8 (807-897)||(43190915-43191005)
chr8 (785-858)||(59562-59635)
chr8 (796-897)||(8569429-8569530)
chr8 (838-919)||(10406269-10406350)
chr8 (624-661)||(29872339-29872376)
chr8 (623-664)||(30088879-30088920)
chr8 (624-661)||(30555735-30555772)
[»] scaffold0039 (3 HSPs)
scaffold0039 (795-919)||(79093-79217)
scaffold0039 (776-919)||(79662-79805)
scaffold0039 (787-860)||(74351-74424)
[»] chr1 (34 HSPs)
chr1 (776-912)||(5782415-5782551)
chr1 (795-919)||(7945533-7945657)
chr1 (772-919)||(6612416-6612563)
chr1 (786-919)||(9339657-9339790)
chr1 (776-917)||(10332987-10333128)
chr1 (792-919)||(1407657-1407784)
chr1 (776-919)||(22856681-22856824)
chr1 (804-917)||(8975188-8975301)
chr1 (814-919)||(9341004-9341109)
chr1 (826-919)||(6613957-6614051)
chr1 (776-918)||(34088449-34088583)
chr1 (787-919)||(3117661-3117793)
chr1 (791-919)||(52440539-52440666)
chr1 (776-919)||(32665749-32665892)
chr1 (785-916)||(50107185-50107316)
chr1 (785-885)||(1001164-1001264)
chr1 (804-912)||(5783095-5783203)
chr1 (804-916)||(11060766-11060878)
chr1 (792-919)||(10333165-10333292)
chr1 (793-916)||(11829927-11830050)
chr1 (807-914)||(7944187-7944294)
chr1 (856-919)||(22857558-22857621)
chr1 (787-919)||(33342428-33342560)
chr1 (785-860)||(44019996-44020071)
chr1 (822-884)||(25037925-25037987)
chr1 (822-884)||(25043137-25043199)
chr1 (810-916)||(39977367-39977473)
chr1 (796-848)||(18897940-18897992)
chr1 (819-919)||(39725383-39725483)
chr1 (807-907)||(44719382-44719482)
chr1 (624-661)||(5719469-5719506)
chr1 (624-685)||(8945155-8945216)
chr1 (624-661)||(25656780-25656817)
chr1 (796-853)||(26519147-26519204)
[»] scaffold0767 (1 HSPs)
scaffold0767 (777-918)||(5601-5742)
[»] chr6 (7 HSPs)
chr6 (776-912)||(31218956-31219092)
chr6 (785-912)||(31219146-31219273)
chr6 (776-919)||(23507950-23508092)
chr6 (776-919)||(30748000-30748143)
chr6 (816-919)||(10855848-10855950)
chr6 (794-853)||(12676515-12676574)
chr6 (812-847)||(6468832-6468867)
[»] scaffold0034 (1 HSPs)
scaffold0034 (807-886)||(116087-116166)
[»] scaffold0016 (1 HSPs)
scaffold0016 (777-848)||(36573-36643)
[»] scaffold0208 (1 HSPs)
scaffold0208 (624-661)||(4871-4908)


Alignment Details
Target: chr2 (Bit Score: 639; Significance: 0; HSPs: 41)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 639; E-Value: 0
Query Start/End: Original strand, 16 - 707
Target Start/End: Original strand, 33161009 - 33161702
Alignment:
Q  16 gattcaagtgtaaaatttaaggaaccatttagagtttttacacattattaattgtatatagttagtgcttttagttaactacacatgagtgagtcagtag 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33161009 gattcaagtgtaaaatttaaggaaccatttagagtttttacacattattaattgtatatagttagtgcttttagttaactacacatgagtgagtcagtag 33161108  T
Q  116 tgtaataaatttatatatatctcaagaaccatgtaatataaccttgaagacacaaaacaaattaaaatatttcatgatgccataactttatcaaacctta 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33161109 tgtaataaatttatatatatctcaagaaccatgtaatataaccttgaagacacaaaacaaattaaaatatttcatgatgccataactttatcaaacctta 33161208  T
Q  216 atgtatttatttatcttccaaatacttccatgtgctactttcaaagaatgtgtcaaatgtcaattggtcaagacacatctgttggtaagttatgaactat 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33161209 atgtatttatttatcttccaaatacttccatgtgctactttcaaagaatgtgtcaaatgtcaattggtcaagacacatctgttggtaagttatgaactat 33161308  T
Q  316 tttatcatatcaaatacaataaattaaccaagaaattagagagggaaaagtaataagaaaaagttaattggccggcttgactataggaacattaacaatg 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33161309 tttatcatatcaaatacaataaattaaccaagaaattagagagggaaaagtaataagaaaaagttaattggccggcttgactataggaacattaacaatg 33161408  T
Q  416 taaagtattaggtgtcacattattggtcatatgcaaaattatagtgagaatccttaattgctttgaaattttgagatatgctggctttgcagggtcctcc 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33161409 taaagtattaggtgtcacattattggtcatatgcaaaattatagtgagaatccttaattgctttgaaattttgagatatgctggctttgcagggtcctcc 33161508  T
Q  516 aaacttaggctttaattatgtcaccgtcacggccggtttaattttaggcatgtgtatgttgagctctttgtactacaaccatcttttcttgacaaggt-- 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||      
T  33161509 aaacttaggctttaattatgtcaccgtcacggccggtttaattttaggcatgtgtatgttgagctctttgtactacaaccatcttttcttgacaacgtac 33161608  T
Q  614 agctgaaattagataaaggatctaagtattacaaataaataagataaacgatctatggtgtaattttatctaaaatgtatgatgcgagtggatc 707  Q
    | ||| ||||||||||| || |||| | |||||||||||||||||||| |||||||||| |||||||| ||||||||||||||| |||||||||    
T  33161609 aactggaattagataaaagacctaaatgttacaaataaataagataaaagatctatggtataattttacctaaaatgtatgatgtgagtggatc 33161702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 777 - 917
Target Start/End: Original strand, 33161769 - 33161909
Alignment:
Q  777 aaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttatt 876  Q
    |||||||||||||||||||| |||||| | |||||||||||||||||| ||| || |||||||||| |||||||||| | ||||||||||||| |||||     
T  33161769 aaattgtgactttagtctctaactctatagctcgttgtcacaaaggtctctgccttaggattaaatgcaaagaagtctcagactatgtacttccgttatc 33161868  T
Q  877 actttagtccttgacgttaaataattttgttaagtgatgat 917  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  33161869 actttagtccttgacgttaaataattttgttaagtgatgat 33161909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 776 - 919
Target Start/End: Complemental strand, 32766361 - 32766217
Alignment:
Q  776 caaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttat 875  Q
    ||||| || ||||| ||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| || ||||| |||||    
T  32766361 caaatagtcactttggtccctgactctgcacctcgttgtcacataggtccctgactcaggattaaatacaaataagtccctgactctgcacttccgttat 32766262  T
Q  876 tactttagtccttgacgtt-aaataattttgttaagtgatgatgt 919  Q
     |||||||||||||||||| ||| || | ||||||||||||||||    
T  32766261 cactttagtccttgacgttaaaaaaaatctgttaagtgatgatgt 32766217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 776 - 919
Target Start/End: Complemental strand, 31091649 - 31091506
Alignment:
Q  776 caaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttat 875  Q
    ||||| || ||||| ||| |||||||| ||||| | ||||||| |||||||||||||||||||||||||||| |||||||||||| || ||||| |||||    
T  31091649 caaatagtcactttggtccctgactctgcaccttgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactctgcacttccgttat 31091550  T
Q  876 tactttagtccttgacgttaaataattttgttaagtgatgatgt 919  Q
     |||||||||  |||||||||| || | ||||||||||||||||    
T  31091549 cactttagtctctgacgttaaaaaaatatgttaagtgatgatgt 31091506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 796 - 919
Target Start/End: Complemental strand, 17466930 - 17466807
Alignment:
Q  796 tgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgtta 895  Q
    ||||||| ||||||| ||||||| | | | |||||||||||||||||||||||||||| |||||| || ||||| ||||| |||||||||   |||||||    
T  17466930 tgactctgcacctcgctgtcacataagccgctgactcaggattaaatacaaagaagtctctgactctgcacttccgttatcactttagtctaagacgtta 17466831  T
Q  896 aataattttgttaagtgatgatgt 919  Q
    ||||||| ||||||||||||||||    
T  17466830 aataattctgttaagtgatgatgt 17466807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 812 - 919
Target Start/End: Complemental strand, 17330316 - 17330209
Alignment:
Q  812 tgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattttgttaagt 911  Q
    ||||||| |||||||||||||||||||||||||||| ||||| |||||| || | ||| ||||| |||||||||| ||||||||| | ||| ||||||||    
T  17330316 tgtcacataggtccctgactcaggattaaatacaaataagtctctgactctgcatttccgttatcactttagtccatgacgttaagttattctgttaagt 17330217  T
Q  912 gatgatgt 919  Q
    ||||||||    
T  17330216 gatgatgt 17330209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 785 - 919
Target Start/End: Original strand, 32764948 - 32765081
Alignment:
Q  785 actttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagt 884  Q
    ||||||||| |||| ||| || || ||||||| | ||||| |||||||||||||||||||||| |||||||||||| || ||||| ||||| |||||| |    
T  32764948 actttagtccctgattctgcagctagttgtcatataggtctctgactcaggattaaatacaaataagtccctgactctgcacttccgttatcactttaat 32765047  T
Q  885 ccttgacgttaaataattttgttaagtgatgatgt 919  Q
    || |||||||||| || | ||||||||||||||||    
T  32765048 ccctgacgttaaa-aaatatgttaagtgatgatgt 32765081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 785 - 909
Target Start/End: Original strand, 38853765 - 38853889
Alignment:
Q  785 actttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagt 884  Q
    ||||| ||| |||||||||||| || |||||| ||||||| ||||||||||||||||||||||| ||||||| | | || ||||| ||||| | ||||||    
T  38853765 actttggtccctgactctacacttcattgtcataaaggtctctgactcaggattaaatacaaagtagtccctaaatgtgcacttccgttatcaatttagt 38853864  T
Q  885 ccttgacgttaaataattttgttaa 909  Q
    |  ||||||||||||||| ||||||    
T  38853865 cactgacgttaaataattatgttaa 38853889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 820 - 919
Target Start/End: Original strand, 14704051 - 14704149
Alignment:
Q  820 aggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattttgttaagtgatgatgt 919  Q
    |||||||||||||||||||||||||||| |||||||| ||| || ||||| ||||| |||||||||| |||||||||| || | ||||||||||||||||    
T  14704051 aggtccctgactcaggattaaatacaaataagtccctcactctgcacttccgttatcactttagtccctgacgttaaa-aaatatgttaagtgatgatgt 14704149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 774 - 916
Target Start/End: Original strand, 31090163 - 31090305
Alignment:
Q  774 aacaaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgtt 873  Q
    ||||||| || | ||||||| |||| ||| || |||| ||||||| |||||| ||||||||||||||||| ||| ||||| |||||| || ||||| |||    
T  31090163 aacaaatagtcaatttagtccctgattctgcagctcgctgtcacataggtccttgactcaggattaaatataaataagtctctgactctgcacttccgtt 31090262  T
Q  874 attactttagtccttgacgttaaataattttgttaagtgatga 916  Q
    || | |||||||| |||||||||| || | |||||||||||||    
T  31090263 atgattttagtccctgacgttaaaaaaatatgttaagtgatga 31090305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 785 - 919
Target Start/End: Complemental strand, 34037786 - 34037652
Alignment:
Q  785 actttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagt 884  Q
    |||||||||  ||||||| ||||| | ||||| |||||||| | ||||||||||||||||||| |||||  ||||| || ||||||||||| ||||||||    
T  34037786 actttagtccttgactctgcaccttgctgtcataaaggtccataactcaggattaaatacaaataagtctatgactctgcacttctgttatcactttagt 34037687  T
Q  885 ccttgacgttaaataattttgttaagtgatgatgt 919  Q
     |  | ||||||| |||| ||||||||||||||||    
T  34037686 tcccgccgttaaaaaattatgttaagtgatgatgt 34037652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 788 - 902
Target Start/End: Complemental strand, 34582780 - 34582666
Alignment:
Q  788 ttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtcct 887  Q
    |||||| |||||||| ||||| | ||| |||||||||  |||||| ||||||||||||||| ||||||||| | || ||||| ||||| ||||||||||     
T  34582780 ttagtccctgactctgcaccttgctgttacaaaggtcattgactcgggattaaatacaaagtagtccctgaatgtgcacttccgttatcactttagtccc 34582681  T
Q  888 tgacgttaaataatt 902  Q
    |||||||||||||||    
T  34582680 tgacgttaaataatt 34582666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 785 - 912
Target Start/End: Complemental strand, 24459559 - 24459432
Alignment:
Q  785 actttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagt 884  Q
    ||||| ||| |||||||| || |||| ||||||| |||||||||| ||||||||||||||||| ||||| |||||  || |||||| |||| ||||||||    
T  24459559 actttggtccctgactctgcatctcgctgtcacataggtccctgaatcaggattaaatacaaataagtctctgaccctgcacttctattatcactttagt 24459460  T
Q  885 ccttgacgttaaataattttgttaagtg 912  Q
    || |||| ||||| || | |||||||||    
T  24459459 ccctgacattaaaaaaatatgttaagtg 24459432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 785 - 919
Target Start/End: Original strand, 2910110 - 2910244
Alignment:
Q  785 actttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagt 884  Q
    |||||||||| ||| | | || |||| ||||||| || |||||||||| |||||||||||||| ||||| |||||| || |||||  || | ||||||||    
T  2910110 actttagtctttgattttgcagctcgctgtcacatagatccctgactcgggattaaatacaaataagtctctgactctgcacttcctttgtcactttagt 2910209  T
Q  885 ccttgacgttaaataattttgttaagtgatgatgt 919  Q
    || |||||||||| || | ||||||||||||||||    
T  2910210 ccctgacgttaaaaaaatctgttaagtgatgatgt 2910244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 776 - 916
Target Start/End: Original strand, 7412093 - 7412233
Alignment:
Q  776 caaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttat 875  Q
    ||||| |||| |||| ||||| ||| |  |||||||||||||| || || |||||||| ||||||||| ||||||||| ||||   || ||||| |||||    
T  7412093 caaatggtgattttaatctctaactttgtacctcgttgtcacatagatctctgactcaagattaaatataaagaagtcactgatagtgcacttccgttat 7412192  T
Q  876 tactttagtccttgacgttaaataattttgttaagtgatga 916  Q
     |||||||||| | || |||||||||| |||||||||||||    
T  7412193 cactttagtccctaacattaaataattatgttaagtgatga 7412233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 785 - 909
Target Start/End: Original strand, 38854799 - 38854923
Alignment:
Q  785 actttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagt 884  Q
    ||||| ||| |||||||||||| ||||||||| |||||||  |||||||||||||||||||||| ||| ||| | | || |||| |||||| | ||||||    
T  38854799 actttggtccctgactctacacttcgttgtcataaaggtctttgactcaggattaaatacaaagtagttcctaaatgtgcacttatgttatcaatttagt 38854898  T
Q  885 ccttgacgttaaataattttgttaa 909  Q
    |  ||| ||||||||||| ||||||    
T  38854899 cactgaagttaaataattatgttaa 38854923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 773 - 917
Target Start/End: Complemental strand, 40000459 - 40000315
Alignment:
Q  773 gaacaaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgt 872  Q
    ||||||||||| ||||| ||| |||||||| ||||||| ||| ||| || ||||||| | ||||||||||||||| ||||| || ||  || ||||| ||    
T  40000459 gaacaaattgtcactttggtccctgactctgcacctcgctgttacatagatccctgattgaggattaaatacaaataagtctctaaccctgcacttccgt 40000360  T
Q  873 tattactttagtccttgacgttaaataattttgttaagtgatgat 917  Q
    ||| |||||| ||| |||||||||  || | ||||||||||||||    
T  40000359 tatcactttattccctgacgttaagaaaatctgttaagtgatgat 40000315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 792 - 919
Target Start/End: Complemental strand, 15442077 - 15441950
Alignment:
Q  792 tctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgac 891  Q
    |||||||||||   ||||| |||||||||| | |||||||||||||||||||||||| ||||| ||| | || |||| | |||| |||||||||  |       
T  15442077 tctctgactctgttcctcgctgtcacaaagattcctgactcaggattaaatacaaagtagtccttgaatgtgcacttttattatcactttagtctctagt 15441978  T
Q  892 gttaaataattttgttaagtgatgatgt 919  Q
    |||||||||||||||||| |||||||||    
T  15441977 gttaaataattttgttaactgatgatgt 15441950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 794 - 912
Target Start/End: Original strand, 5914323 - 5914441
Alignment:
Q  794 tctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgt 893  Q
    ||||||| | ||||||||||| | | ||||| ||||||||  ||||||||||||||||||  ||||| || ||| | ||||| ||||||| || ||||||    
T  5914323 tctgactttgcacctcgttgtgatataggtctctgactcacaattaaatacaaagaagtcagtgactttgcactcccgttatcactttagaccatgacgt 5914422  T
Q  894 taaataattttgttaagtg 912  Q
    ||||||||| |||||||||    
T  5914423 taaataattctgttaagtg 5914441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 776 - 912
Target Start/End: Complemental strand, 5915114 - 5914978
Alignment:
Q  776 caaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttat 875  Q
    ||||| || |||||||||  ||||||| ||||||| | ||| | |||||  |||||||| |||||||||||||||||| || ||| || ||||| |||||    
T  5915114 caaatagtcactttagtccatgactctgcacctcgctttcaaataggtctttgactcagaattaaatacaaagaagtcactaactctgcacttccgttat 5915015  T
Q  876 tactttagtccttgacgttaaataattttgttaagtg 912  Q
     || ||| |||  |||||||||||||| |||||||||    
T  5915014 caccttaatccccgacgttaaataattctgttaagtg 5914978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 827 - 919
Target Start/End: Original strand, 17466093 - 17466185
Alignment:
Q  827 tgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattttgttaagtgatgatgt 919  Q
    |||||||||||||||||||||||  || |||||| || ||||| ||| | |||||||||| |||||| ||| |||| ||||||||||||||||    
T  17466093 tgactcaggattaaatacaaagatatctctgactctgcacttccgttttcactttagtccctgacgtgaaacaattatgttaagtgatgatgt 17466185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 808 - 919
Target Start/End: Complemental strand, 21733864 - 21733750
Alignment:
Q  808 tcgttgtcacaaaggtccctgactcag---gattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataatttt 904  Q
    ||||||||||||||||||||||||||    ||||||||||||| ||||| |||||| || ||||| || || ||||||||  |||  |||||| |||| |    
T  21733864 tcgttgtcacaaaggtccctgactcatcatgattaaatacaaataagtctctgactctgcacttccgtcatcactttagttgttgcagttaaaaaattct 21733765  T
Q  905 gttaagtgatgatgt 919  Q
    |||||||||||||||    
T  21733764 gttaagtgatgatgt 21733750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 785 - 916
Target Start/End: Complemental strand, 33163572 - 33163440
Alignment:
Q  785 actttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatac-aaagaagtccctgactatgtacttctgttattactttag 883  Q
    |||||||||| |||||||||||| ||||||| ||||| || ||||||||  ||||||||| ||| ||||   |||||||| | ||| ||||| |||||||    
T  33163572 actttagtctttgactctacaccacgttgtcgcaaagttctctgactcataattaaatacaaaaaaagtatttgactatgcatttccgttatcactttag 33163473  T
Q  884 tccttgacgttaaataattttgttaagtgatga 916  Q
    ||  ||||||| | ||||||||| |||||||||    
T  33163472 tctctgacgttgattaattttgtgaagtgatga 33163440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 820 - 919
Target Start/End: Original strand, 7073684 - 7073783
Alignment:
Q  820 aggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattttgttaagtgatgatgt 919  Q
    ||||| |||| || |||||||||||||| ||||| |||| | || ||||| ||||| |||||||||| ||||||||| | ||| ||||||||||||||||    
T  7073684 aggtctctgattcgggattaaatacaaataagtctctgattctgcacttccgttatcactttagtccctgacgttaagttattctgttaagtgatgatgt 7073783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 818 - 919
Target Start/End: Complemental strand, 31814424 - 31814323
Alignment:
Q  818 aaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattttgttaagtgatgat 917  Q
    ||||||| ||||||||| |||||||| ||||||||   ||||| || ||||| ||||| |||||||||| |  | |||||||||| ||||||||||||||    
T  31814424 aaaggtctctgactcagaattaaatataaagaagtttttgactctgcacttccgttatcactttagtccctagcattaaataattctgttaagtgatgat 31814325  T
Q  918 gt 919  Q
    ||    
T  31814324 gt 31814323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 795 - 884
Target Start/End: Original strand, 21732132 - 21732216
Alignment:
Q  795 ctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagt 884  Q
    |||||| | ||||||||| ||||||||||||  |||||||||||||||||||| ||||   ||||| |||||||| ||||||||||||||    
T  21732132 ctgactttgcacctcgttatcacaaaggtcc--gactcaggattaaatacaaataagt---tgactctgtacttccgttattactttagt 21732216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 785 - 909
Target Start/End: Complemental strand, 31443357 - 31443234
Alignment:
Q  785 actttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagt 884  Q
    |||||||||||||||||| || |||||||||||||| |||  ||||| |  ||||||||||||| |||||||||   || |||| |||||| | ||||||    
T  31443357 actttagtctctgactctgcatctcgttgtcacaaaagtcattgacttataattaaatacaaagtagtccctga-agtgcacttatgttatcagtttagt 31443259  T
Q  885 ccttgacgttaaataattttgttaa 909  Q
    | ||||| ||||| | |||||||||    
T  31443258 ctttgactttaaaaacttttgttaa 31443234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 796 - 919
Target Start/End: Complemental strand, 12746303 - 12746180
Alignment:
Q  796 tgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgtta 895  Q
    ||||||| |||||||  |||  |||||| |||||||||||||||||||||||| ||| ||||| | ||  |||| ||||| |||||||||| | | ||||    
T  12746303 tgactctgcacctcgcagtcttaaaggttcctgactcaggattaaatacaaagtagttcctgaatgtgcccttccgttatcactttagtccataatgtta 12746204  T
Q  896 aataattttgttaagtgatgatgt 919  Q
    ||||||| |  |||||||| ||||    
T  12746203 aataattctagtaagtgattatgt 12746180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 814 - 916
Target Start/End: Original strand, 37607141 - 37607243
Alignment:
Q  814 tcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattttgttaagtga 913  Q
    ||||||| |||||| ||||| |||||||||||| | ||||| | | | || ||||| ||||| |||||||||| |||||||| |||||| |||||| |||    
T  37607141 tcacaaatgtccctaactcatgattaaatacaaggtagtcctttaatgtgcacttccgttatcactttagtccctgacgttatataattatgttaactga 37607240  T
Q  914 tga 916  Q
    |||    
T  37607241 tga 37607243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 805 - 919
Target Start/End: Complemental strand, 38856459 - 38856346
Alignment:
Q  805 acctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataatttt 904  Q
    ||||||||||||||||| || | |||||| ||||||||| |||| ||| ||||| |||| |||| |||||| |||||| ||  ||||||||||||||| |    
T  38856459 acctcgttgtcacaaag-tctcagactcatgattaaatataaagtagttcctgagtatgcacttttgttatcactttaatctctgacgttaaataattct 38856361  T
Q  905 gttaagtgatgatgt 919  Q
    || || |||| ||||    
T  38856360 gtaaattgataatgt 38856346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 827 - 919
Target Start/End: Complemental strand, 38985060 - 38984967
Alignment:
Q  827 tgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaat-aattttgttaagtgatgatgt 919  Q
    |||||| | ||||||||||||||||||| ||||| || ||||| ||||| |||||||||  | ||||||||| |||| ||||||||| ||||||    
T  38985060 tgactcggaattaaatacaaagaagtccttgactctgcacttccgttatcactttagtcactaacgttaaataaattatgttaagtgttgatgt 38984967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 813 - 885
Target Start/End: Original strand, 8420051 - 8420123
Alignment:
Q  813 gtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtc 885  Q
    |||||||| |||||||| ||| |||||||||||||| ||||||||| | || ||||||||||| | |||||||    
T  8420051 gtcacaaatgtccctgagtcaagattaaatacaaagtagtccctgaatgtgcacttctgttatcagtttagtc 8420123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 795 - 858
Target Start/End: Original strand, 11985711 - 11985774
Alignment:
Q  795 ctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctga 858  Q
    ||||||| |||||||| ||| | ||||||| ||||||||||||||||||||||| |||| ||||    
T  11985711 ctgactccacacctcgctgttataaaggtctctgactcaggattaaatacaaagtagtctctga 11985774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 776 - 917
Target Start/End: Complemental strand, 39016503 - 39016364
Alignment:
Q  776 caaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccct--gactcaggattaaatacaaagaagtccctgactatgtacttctgtt 873  Q
    ||||| || |||||||||||||| ||| || |||| ||||||| |  || ||  |||||||||||||||||||| |||||    ||| || ||||| |||    
T  39016503 caaatagtcactttagtctctgattctgcagctcgctgtcacatacatctctctgactcaggattaaatacaaataagtc----actctgcacttccgtt 39016408  T
Q  874 attactttagtccttgacgttaaataattttgttaagtgatgat 917  Q
    || |||||||||  |||||||||| || | ||||||||||||||    
T  39016407 atcactttagtctctgacgttaaaaaaatatgttaagtgatgat 39016364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 809 - 860
Target Start/End: Original strand, 43380614 - 43380665
Alignment:
Q  809 cgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgact 860  Q
    |||||||||||||||| |||||||| ||||||||||| ||||||| ||||||    
T  43380614 cgttgtcacaaaggtctctgactcatgattaaatacatagaagtctctgact 43380665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 773 - 915
Target Start/End: Complemental strand, 39257140 - 39257004
Alignment:
Q  773 gaacaaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgt 872  Q
    |||||||| || ||||||  |||||||| | || |||||||||||| ||||| ||||||||| |||  |||||||||||||  ||    || ||||| ||    
T  39257140 gaacaaatggtaactttaaactctgactttgcagctcgttgtcacataggtctctgactcagtatttgatacaaagaagtctttg----tgcacttccgt 39257045  T
Q  873 tattactttagtccttgacgttaaataattttgttaagtgatg 915  Q
      | ||||||||| || ||||||||||||| ||||||||||||    
T  39257044 --tcactttagtctttaacgttaaataattatgttaagtgatg 39257004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 798 - 841
Target Start/End: Complemental strand, 14887598 - 14887555
Alignment:
Q  798 actctacacctcgttgtcacaaaggtccctgactcaggattaaa 841  Q
    ||||| ||||||| |||||| |||||||||||||||||||||||    
T  14887598 actctgcacctcgctgtcacgaaggtccctgactcaggattaaa 14887555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 812 - 858
Target Start/End: Complemental strand, 8421007 - 8420961
Alignment:
Q  812 tgtcacaaaggtccctgactcaggattaaatacaaagaagtccctga 858  Q
    |||||||||||||  |||||||||||||||||||||| |||| ||||    
T  8421007 tgtcacaaaggtcattgactcaggattaaatacaaagtagtctctga 8420961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 785 - 847
Target Start/End: Original strand, 39015015 - 39015077
Alignment:
Q  785 actttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaa 847  Q
    ||||| ||| |||||||| ||||||| || |||| || ||| |||||||||||||||||||||    
T  39015015 acttttgtccctgactctgcacctcgctgccacatagatccttgactcaggattaaatacaaa 39015077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 777 - 854
Target Start/End: Original strand, 12003569 - 12003646
Alignment:
Q  777 aaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtcc 854  Q
    |||| |||||||||||| || ||| |  |||||||||||||||||| | |||||| | ||||||||| |||| |||||    
T  12003569 aaatagtgactttagtcactaactttgaacctcgttgtcacaaaggacactgacttaagattaaatataaagtagtcc 12003646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 624 - 661
Target Start/End: Original strand, 27550667 - 27550704
Alignment:
Q  624 agataaaggatctaagtattacaaataaataagataaa 661  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  27550667 agataaaggatcaaagtgttacaaataaataagataaa 27550704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 3e-41; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 785 - 919
Target Start/End: Original strand, 20464079 - 20464213
Alignment:
Q  785 actttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagt 884  Q
    ||||||||| | |||||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| || ||||||||||| ||||||||    
T  20464079 actttagtccccgactctgcacctcgttgtcacaaaggtccctggctcatgattaaatacaaagaagtccctgactctgcacttctgttatcactttagt 20464178  T
Q  885 ccttgacgttaaataattttgttaagtgatgatgt 919  Q
    ||  |||||||||||| | ||||||||||||||||    
T  20464179 ccacgacgttaaataactctgttaagtgatgatgt 20464213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 776 - 918
Target Start/End: Complemental strand, 52318439 - 52318297
Alignment:
Q  776 caaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttat 875  Q
    ||||| || ||||| |||||||||||| ||| ||| ||||||| || ||||||||||||||||||||||||| |||||||||||| || ||||||| |||    
T  52318439 caaatagtcactttggtctctgactctgcacttcgctgtcacatagatccctgactcaggattaaatacaaataagtccctgactctgcacttctgatat 52318340  T
Q  876 tactttagtccttgacgttaaataattttgttaagtgatgatg 918  Q
    ||||||||||| |||||||||| || | |||||||||||||||    
T  52318339 tactttagtccctgacgttaaaaaaatctgttaagtgatgatg 52318297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 776 - 919
Target Start/End: Original strand, 48572986 - 48573129
Alignment:
Q  776 caaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttat 875  Q
    ||||| || ||||| ||| |||||||| ||||||||| ||||| |||||||||||||||||||||||||||| ||| | |||||| || ||||| |||||    
T  48572986 caaatagtcactttggtccctgactctgcacctcgttatcacataggtccctgactcaggattaaatacaaataagcctctgactctgcacttccgttat 48573085  T
Q  876 tactttagtccttgacgttaaataattttgttaagtgatgatgt 919  Q
     ||||||||||||||||||||| || ||||||||| ||||||||    
T  48573086 cactttagtccttgacgttaaaaaaatttgttaagcgatgatgt 48573129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 776 - 897
Target Start/End: Original strand, 17700519 - 17700640
Alignment:
Q  776 caaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttat 875  Q
    ||||| || |||||||||| ||||||| ||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||| || ||||| |||||    
T  17700519 caaatagtcactttagtctttgactctgcacctcgttgtcacataggttcctgactcaggattaaatacaaataagtccctgactctgcacttccgttat 17700618  T
Q  876 tactttagtccttgacgttaaa 897  Q
     |||||||||| ||||||||||    
T  17700619 cactttagtccctgacgttaaa 17700640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 776 - 912
Target Start/End: Complemental strand, 47118173 - 47118037
Alignment:
Q  776 caaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttat 875  Q
    ||||| || ||||||||| |||||||| ||||||||||||| | | ||||| ||||||||||||||| |||||||||| |||||| || ||||  |||||    
T  47118173 caaatggtcactttagtccctgactctgcacctcgttgtcatataagtccccgactcaggattaaatgcaaagaagtctctgactctgcactttcgttat 47118074  T
Q  876 tactttagtccttgacgttaaataattttgttaagtg 912  Q
     |||||||||| |||||||||||||||||||||||||    
T  47118073 cactttagtccctgacgttaaataattttgttaagtg 47118037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 776 - 919
Target Start/End: Original strand, 36278953 - 36279096
Alignment:
Q  776 caaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttat 875  Q
    ||||| || ||||||||| |||| | |||| |||||||||||| |||||||||| ||||||||||||||||| ||||| |||||| || ||||| |||||    
T  36278953 caaatagtcactttagtccctgattatacagctcgttgtcacataggtccctgattcaggattaaatacaaataagtctctgactctgcacttccgttat 36279052  T
Q  876 tactttagtccttgacgttaaataattttgttaagtgatgatgt 919  Q
     | |||||||| |||||||||| |||| | ||||||||||||||    
T  36279053 cattttagtccctgacgttaaaaaattcttttaagtgatgatgt 36279096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 785 - 909
Target Start/End: Original strand, 19114543 - 19114667
Alignment:
Q  785 actttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagt 884  Q
    ||||||||| |||||||| ||| ||||||||||| |||||||||||||| ||||||||||||||||||| || ||| || ||||| ||||| ||||||||    
T  19114543 actttagtccctgactctgcacttcgttgtcacagaggtccctgactcaagattaaatacaaagaagtcactaactttgcacttccgttatcactttagt 19114642  T
Q  885 ccttgacgttaaataattttgttaa 909  Q
    |  | ||||||||||||| ||||||    
T  19114643 ctcttacgttaaataattctgttaa 19114667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 776 - 912
Target Start/End: Complemental strand, 33428557 - 33428421
Alignment:
Q  776 caaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttat 875  Q
    ||||| || ||||| ||| |||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||| || | ||| ||| |    
T  33428557 caaatggtcactttcgtccctgactctgcacctcgttgtcacataggtccctgactcagaattaaatacaaagaagtccttgactctgcatttccgttgt 33428458  T
Q  876 tactttagtccttgacgttaaataattttgttaagtg 912  Q
     |||||||||||   |||||||||||| |||||||||    
T  33428457 cactttagtcctcagcgttaaataattatgttaagtg 33428421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 776 - 912
Target Start/End: Complemental strand, 45601060 - 45600925
Alignment:
Q  776 caaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttat 875  Q
    ||||| || ||||||||| ||||||||   ||||| ||||||| |||||||||| |||||||||||||||||||||| ||||||| || ||||| |||||    
T  45601060 caaatcgtcactttagtccctgactctgtccctcgctgtcacataggtccctgattcaggattaaatacaaagaagt-cctgactctgcacttccgttat 45600962  T
Q  876 tactttagtccttgacgttaaataattttgttaagtg 912  Q
     ||||||||||  |||||||||||||| |||||||||    
T  45600961 cactttagtccacgacgttaaataattctgttaagtg 45600925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 785 - 897
Target Start/End: Complemental strand, 17702032 - 17701920
Alignment:
Q  785 actttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagt 884  Q
    |||||||||||||| ||| || |||| ||||| | |||||||||||||| ||||||||||||| |||||||||||| || ||||| ||||| ||||||||    
T  17702032 actttagtctctgattctgcagctcgctgtcatataggtccctgactcaagattaaatacaaataagtccctgactctgcacttccgttatcactttagt 17701933  T
Q  885 ccttgacgttaaa 897  Q
    || ||||||||||    
T  17701932 ccctgacgttaaa 17701920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 796 - 912
Target Start/End: Complemental strand, 47075453 - 47075337
Alignment:
Q  796 tgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgtta 895  Q
    ||||||| ||||||||||||||| |||||| | ||||| ||||||||||||||||  |||||||| |  ||||| ||||| |||||||||  ||||||||    
T  47075453 tgactctgcacctcgttgtcacataggtccgtcactcaagattaaatacaaagaaacccctgactctacacttccgttatcactttagtctctgacgtta 47075354  T
Q  896 aataattttgttaagtg 912  Q
    |||||||||||||||||    
T  47075353 aataattttgttaagtg 47075337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 776 - 919
Target Start/End: Original strand, 55388074 - 55388217
Alignment:
Q  776 caaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttat 875  Q
    ||||| || ||||||||| |||| ||| || |||| ||||| | ||||| |||||||||||||||||||||| ||||  |||||| || ||| | |||||    
T  55388074 caaatagtcactttagtccctgattctgcagctcgctgtcatataggtctctgactcaggattaaatacaaataagttactgactctgcactcccgttat 55388173  T
Q  876 tactttagtccttgacgttaaataattttgttaagtgatgatgt 919  Q
     |||||||||| |||||||||| || ||||||||||||||||||    
T  55388174 cactttagtccctgacgttaaaaaaatttgttaagtgatgatgt 55388217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 796 - 912
Target Start/End: Complemental strand, 19115248 - 19115133
Alignment:
Q  796 tgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgtta 895  Q
    ||||||| ||||||| ||||||| |||||| | |||||||||||||||||||||||| | ||||| || ||||| ||| |||||||||||| | ||||||    
T  19115248 tgactctgcacctcgatgtcacataggtccttcactcaggattaaatacaaagaagt-catgactctgcacttccgtttttactttagtccctaacgtta 19115150  T
Q  896 aataattttgttaagtg 912  Q
    ||||||| |||||||||    
T  19115149 aataattctgttaagtg 19115133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 820 - 919
Target Start/End: Complemental strand, 48574537 - 48574438
Alignment:
Q  820 aggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattttgttaagtgatgatgt 919  Q
    |||||||||||||||||||||||||||| |||||||||||| || ||||  ||||| ||||||||||||||||||||| || | | |||| |||||||||    
T  48574537 aggtccctgactcaggattaaatacaaataagtccctgactctgcactttcgttatcactttagtccttgacgttaaaaaaatcttttaaatgatgatgt 48574438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 776 - 917
Target Start/End: Original strand, 2591628 - 2591769
Alignment:
Q  776 caaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttat 875  Q
    ||||| || ||||||||| |||| ||| || || | ||||||| |||||||||||||||||||||||||||| ||||| |||||| || |||||  | ||    
T  2591628 caaatagtcactttagtccctgattctgcagcttgctgtcacataggtccctgactcaggattaaatacaaacaagtctctgactctgcacttccatgat 2591727  T
Q  876 tactttagtccttgacgttaaataattttgttaagtgatgat 917  Q
     |||||||||| ||| ||||| | ||| ||||||||||||||    
T  2591728 cactttagtccctgatgttaagttattctgttaagtgatgat 2591769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 814 - 919
Target Start/End: Complemental strand, 36280401 - 36280296
Alignment:
Q  814 tcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattttgttaagtga 913  Q
    ||||| ||||| |||||||||||||||||| ||| ||||| |||||| || ||||| ||||| |||||||||| |||||||||| || | ||||||||||    
T  36280401 tcacataggtctctgactcaggattaaatataaataagtctctgactctgcacttccgttatcactttagtccctgacgttaaaaaaatatgttaagtga 36280302  T
Q  914 tgatgt 919  Q
    ||||||    
T  36280301 tgatgt 36280296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 776 - 891
Target Start/End: Complemental strand, 2592129 - 2592014
Alignment:
Q  776 caaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttat 875  Q
    ||||| || ||||||||| || | ||| || |||| ||||||| |||||||||||||||||||||||||||| ||||||||||||   |||||| |||||    
T  2592129 caaatagtcactttagtccctaattctgcagctcgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactcaatacttccgttat 2592030  T
Q  876 tactttagtccttgac 891  Q
     |||||||||| ||||    
T  2592029 cactttagtccctgac 2592014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 812 - 919
Target Start/End: Complemental strand, 53959186 - 53959079
Alignment:
Q  812 tgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattttgttaagt 911  Q
    ||||||| ||||| |||||||| ||||||||||||| |||| | ||||| || ||||| ||||| |||||||||  |||||||||| || ||||||||||    
T  53959186 tgtcacataggtctctgactcatgattaaatacaaataagttcatgactctgcacttccgttatcactttagtctctgacgttaaaaaaatttgttaagt 53959087  T
Q  912 gatgatgt 919  Q
    ||||||||    
T  53959086 gatgatgt 53959079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 785 - 919
Target Start/End: Original strand, 50753827 - 50753961
Alignment:
Q  785 actttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagt 884  Q
    ||||||||| ||  |||| ||||||| ||||||| |||||||| | ||||||||||||| ||| ||||  |||||| |  ||||||||||| ||||||||    
T  50753827 actttagtccctagctctgcacctcgctgtcacataggtccctaattcaggattaaatataaacaagtttctgactctacacttctgttatcactttagt 50753926  T
Q  885 ccttgacgttaaataattttgttaagtgatgatgt 919  Q
    || || ||||||| || | ||||||||||||||||    
T  50753927 ccctgccgttaaaaaaatctgttaagtgatgatgt 50753961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 795 - 919
Target Start/End: Original strand, 612234 - 612358
Alignment:
Q  795 ctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgtt 894  Q
    |||||| | ||||||||||| |||||| |||  || |||  ||||||||||||||||||| ||| | ||||||| |||||| |||||||| | | || ||    
T  612234 ctgactatgcacctcgttgttacaaagatcctcgattcaaaattaaatacaaagaagtccgtgaatgtgtacttatgttatcactttagttcctcacatt 612333  T
Q  895 aaataattttgttaagtgatgatgt 919  Q
    |||||||| ||||||||||||||||    
T  612334 aaataattatgttaagtgatgatgt 612358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 785 - 919
Target Start/End: Original strand, 52316989 - 52317123
Alignment:
Q  785 actttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagt 884  Q
    |||||||||||||| ||| || |||| ||||| | ||||| |||||||| ||||||||||||| |||||  | ||| || || || ||||| | ||||||    
T  52316989 actttagtctctgattctgcagctcgctgtcatataggtctctgactcatgattaaatacaaataagtctttaactctgcacctccgttatcattttagt 52317088  T
Q  885 ccttgacgttaaataattttgttaagtgatgatgt 919  Q
    || |||||||||| || | ||||||||||||||||    
T  52317089 ccatgacgttaaaaaaatctgttaagtgatgatgt 52317123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 814 - 919
Target Start/End: Original strand, 3671077 - 3671182
Alignment:
Q  814 tcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattttgttaagtga 913  Q
    ||||||||||| ||||||||| |||||||||||| |||||  ||||| |  ||||| ||||| |||||| ||| || ||||||| |||| ||||||||||    
T  3671077 tcacaaaggtctctgactcagaattaaatacaaataagtctatgactctccacttccgttatcactttaatccctgccgttaaaaaattatgttaagtga 3671176  T
Q  914 tgatgt 919  Q
    ||||||    
T  3671177 tgatgt 3671182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 807 - 896
Target Start/End: Complemental strand, 11773142 - 11773053
Alignment:
Q  807 ctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaa 896  Q
    |||| ||||||| |||||||||||||||||||||||||||| ||||| |||||| |  ||||| ||||| |||||||||| || ||||||    
T  11773142 ctcgctgtcacataggtccctgactcaggattaaatacaaataagtctctgactctacacttccgttatcactttagtccctggcgttaa 11773053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 795 - 919
Target Start/End: Original strand, 34263825 - 34263949
Alignment:
Q  795 ctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgtt 894  Q
    |||||||| ||||||| ||||||| |||||| ||| ||||||||||||||||| ||||| |||||| |  |||||  |||| |||||| ||| |||| ||    
T  34263825 ctgactctgcacctcgctgtcacagaggtccttgattcaggattaaatacaaataagtctctgactctacacttccattatcactttaatccctgacatt 34263924  T
Q  895 aaataattttgttaagtgatgatgt 919  Q
    ||| || | ||||||| ||||||||    
T  34263925 aaaaaaatatgttaagggatgatgt 34263949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 807 - 919
Target Start/End: Complemental strand, 36827566 - 36827454
Alignment:
Q  807 ctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattttgt 906  Q
    |||| ||| |||||| ||| ||||||||||||||||| |||  | || |||| | |  ||||| ||||| |||||||||  ||| |||||||||||||||    
T  36827566 ctcgctgtgacaaagatccttgactcaggattaaatataaaataatctctgaatgtacacttccgttatcactttagtctctgatgttaaataattttgt 36827467  T
Q  907 taagtgatgatgt 919  Q
    |||||||||||||    
T  36827466 taagtgatgatgt 36827454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 795 - 847
Target Start/End: Original strand, 19331128 - 19331180
Alignment:
Q  795 ctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaa 847  Q
    |||||||| ||||| | ||||||| ||||||||||||||||||||||||||||    
T  19331128 ctgactctgcaccttgctgtcacataggtccctgactcaggattaaatacaaa 19331180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 804 - 860
Target Start/End: Original strand, 47427889 - 47427945
Alignment:
Q  804 cacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgact 860  Q
    ||||||| ||||||| |||||| |||||||  |||||||||||||||||||||||||    
T  47427889 cacctcgctgtcacataggtccttgactcaaaattaaatacaaagaagtccctgact 47427945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 808 - 847
Target Start/End: Original strand, 39497240 - 39497279
Alignment:
Q  808 tcgttgtcacaaaggtccctgactcaggattaaatacaaa 847  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  39497240 tcgttgtcacaaaggtccatgactcaggattaaatacaaa 39497279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 776 - 919
Target Start/End: Complemental strand, 55389591 - 55389448
Alignment:
Q  776 caaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttat 875  Q
    ||||| || ||||| ||| || ||||| ||||||| ||||||| |||||  |||||||  |||||||||||  |||||||||||| |  ||||| |||||    
T  55389591 caaatagtcactttggtccctaactctgcacctcgctgtcacataggtcattgactcaaaattaaatacaattaagtccctgactctacacttccgttat 55389492  T
Q  876 tactttagtccttgacgttaaataattttgttaagtgatgatgt 919  Q
     ||||||||||   |||||| |  | | ||||||||||||||||    
T  55389491 cactttagtccccaacgttacaacaatatgttaagtgatgatgt 55389448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 820 - 914
Target Start/End: Original strand, 48808411 - 48808505
Alignment:
Q  820 aggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattttgttaagtgat 914  Q
    ||||| |||||||||||||||||||||| |||| ||| ||| || ||||| ||| | ||||||||||  || |||||| || | |||||||||||    
T  48808411 aggtctctgactcaggattaaatacaaataagttcctaactctgcacttccgttgtcactttagtcccggatgttaaaaaaatatgttaagtgat 48808505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 810 - 848
Target Start/End: Complemental strand, 49261622 - 49261584
Alignment:
Q  810 gttgtcacaaaggtccctgactcaggattaaatacaaag 848  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  49261622 gttgtcacataggtccctgactcaggattaaatacaaag 49261584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 624 - 661
Target Start/End: Original strand, 30362655 - 30362692
Alignment:
Q  624 agataaaggatctaagtattacaaataaataagataaa 661  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  30362655 agataaaggatcaaagtgttacaaataaataagataaa 30362692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 624 - 661
Target Start/End: Original strand, 38698631 - 38698668
Alignment:
Q  624 agataaaggatctaagtattacaaataaataagataaa 661  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  38698631 agataaaggatcaaagtgttacaaataaataagataaa 38698668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 5e-40; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 776 - 912
Target Start/End: Complemental strand, 53771171 - 53771035
Alignment:
Q  776 caaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttat 875  Q
    ||||| || ||||||||| |||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||| || ||||| |||||    
T  53771171 caaatggtcactttagtccctgactctgcacctcgttgtcacataggtccctgactcagaattaaatacaaagaagcccctgactctgcacttccgttat 53771072  T
Q  876 tactttagtccttgacgttaaataattttgttaagtg 912  Q
     ||||||||| |||||||||||||||| |||||||||    
T  53771071 cactttagtcattgacgttaaataattctgttaagtg 53771035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 777 - 919
Target Start/End: Original strand, 39868924 - 39869064
Alignment:
Q  777 aaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttatt 876  Q
    ||||||| |||||||||||||||||| ||||||| ||| ||||||||||||||||||  |||||||||||| |||| |  |||| || ||||| |||||     
T  39868924 aaattgttactttagtctctgactctgcacctcgctgttacaaaggtccctgactcataattaaatacaaacaagttc--gactctgcacttccgttatc 39869021  T
Q  877 actttagtccttgacgttaaataattttgttaagtgatgatgt 919  Q
    |||||||||  ||||||||||||||| ||||||||||||||||    
T  39869022 actttagtctctgacgttaaataattatgttaagtgatgatgt 39869064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 797 - 909
Target Start/End: Original strand, 44158526 - 44158638
Alignment:
Q  797 gactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaa 896  Q
    |||||| ||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||| ||| | |||||||    
T  44158526 gactctgcacctcgttgttacagaggttcctgactcaggattaaatacaaagaagtccctgactctatacttttgttattactttaatccctaacgttaa 44158625  T
Q  897 ataattttgttaa 909  Q
    |||||| ||||||    
T  44158626 ataattatgttaa 44158638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 800 - 917
Target Start/End: Original strand, 4701790 - 4701907
Alignment:
Q  800 tctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaata 899  Q
    ||||||||||| |||||||||||||  ||||| | ||||||||||||||||||||| ||||||| ||||| | ||| |||||||||| ||| ||||||||    
T  4701790 tctacacctcgctgtcacaaaggtctatgacttatgattaaatacaaagaagtccccgactatgcacttccgctatcactttagtccctgatgttaaata 4701889  T
Q  900 attttgttaagtgatgat 917  Q
    ||| ||||||||||||||    
T  4701890 attctgttaagtgatgat 4701907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 776 - 912
Target Start/End: Complemental strand, 48740142 - 48740006
Alignment:
Q  776 caaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttat 875  Q
    ||||| || |||||||||  || |||| |||||| |||||||  || |||||||||||  ||||||||||||||||||||  ||| || |||||||||||    
T  48740142 caaatggtcactttagtccatgtctctgcacctcattgtcacgtagatccctgactcataattaaatacaaagaagtccccaactctgcacttctgttat 48740043  T
Q  876 tactttagtccttgacgttaaataattttgttaagtg 912  Q
     |||||||||| ||||||||||||||| |||||||||    
T  48740042 cactttagtccctgacgttaaataattctgttaagtg 48740006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 776 - 919
Target Start/End: Complemental strand, 4703339 - 4703196
Alignment:
Q  776 caaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttat 875  Q
    |||||||| ||||||||  ||||||||||| |||| ||||||| |||||||| |||||| ||||||||||||||||||  ||||| |  ||||| |||||    
T  4703339 caaattgtcactttagttactgactctacatctcgctgtcacataggtccctaactcagaattaaatacaaagaagtctttgactgtacacttccgttat 4703240  T
Q  876 tactttagtccttgacgttaaataattttgttaagtgatgatgt 919  Q
     |||||||||  || | |||||||||| | ||||||||||||||    
T  4703239 cactttagtctctggcattaaataattctattaagtgatgatgt 4703196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 795 - 919
Target Start/End: Complemental strand, 47878587 - 47878463
Alignment:
Q  795 ctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgtt 894  Q
    |||||||| ||||||| ||| ||| ||||||||||||| |||||||||||||| |||||||||||| |  ||||| ||||| |||||||||| |||||||    
T  47878587 ctgactctgcacctcgctgttacataggtccctgactctggattaaatacaaataagtccctgactctacacttccgttatcactttagtccatgacgtt 47878488  T
Q  895 aaataattttgttaagtgatgatgt 919  Q
    ||  || | ||||||| ||||||||    
T  47878487 aataaaatctgttaagcgatgatgt 47878463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 796 - 919
Target Start/End: Complemental strand, 21623219 - 21623096
Alignment:
Q  796 tgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgtta 895  Q
    ||||||| || ||||||||||||| | ||||||| |||||||||||||||||  ||||| ||| | || ||||||||||| ||||||||||  |||||||    
T  21623219 tgactctgcatctcgttgtcacaatgttccctgattcaggattaaatacaaaatagtccttgaatgtgcacttctgttatcactttagtccccgacgtta 21623120  T
Q  896 aataattttgttaagtgatgatgt 919  Q
    ||||||| |||||| | |||||||    
T  21623119 aataattatgttaactaatgatgt 21623096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 812 - 919
Target Start/End: Original strand, 42278086 - 42278193
Alignment:
Q  812 tgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattttgttaagt 911  Q
    ||||||| ||||||||||||| |||||||||||||| |||| ||||||| || ||||| ||||| |||||| ||| |||||||||| || | ||||||||    
T  42278086 tgtcacataggtccctgactcgggattaaatacaaataagttcctgactctgcacttccgttatcactttaatccctgacgttaaaaaaatctgttaagt 42278185  T
Q  912 gatgatgt 919  Q
    ||||||||    
T  42278186 gatgatgt 42278193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 776 - 860
Target Start/End: Complemental strand, 19051353 - 19051269
Alignment:
Q  776 caaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgact 860  Q
    ||||| || ||||||||| ||||||||||||||||||| |||||||||| |||||||  ||||||||||||||||||| ||||||    
T  19051353 caaatggtcactttagtccctgactctacacctcgttggcacaaaggtcactgactcgagattaaatacaaagaagtctctgact 19051269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 787 - 919
Target Start/End: Original strand, 26170652 - 26170784
Alignment:
Q  787 tttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtcc 886  Q
    |||||||||||||| | ||||||||||| ||||| ||  |||||| | ||||||||||||| |||| ||| ||| || |||||  |||| ||||||||||    
T  26170652 tttagtctctgactttgcacctcgttgttacaaaagtatctgacttaagattaaatacaaataagttccttactctgcacttccattatcactttagtcc 26170751  T
Q  887 ttgacgttaaataattttgttaagtgatgatgt 919  Q
     ||  |||||| |||||||||||||||||||||    
T  26170752 atgctgttaaaaaattttgttaagtgatgatgt 26170784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 785 - 916
Target Start/End: Original strand, 47874574 - 47874704
Alignment:
Q  785 actttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagt 884  Q
    |||||||||||||| ||| || |||| | ||||| |||||||||||||| ||||||||||||| |||||||||| | || ||||| ||||| ||||||||    
T  47874574 actttagtctctgattctgcagctcgctatcacataggtccctgactcaagattaaatacaaataagtccctgattctgcacttccgttatcactttagt 47874673  T
Q  885 ccttgacgttaaataattttgttaagtgatga 916  Q
    || ||| |||||| || | |||||| ||||||    
T  47874674 cc-tgatgttaaaaaaatatgttaaatgatga 47874704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 785 - 912
Target Start/End: Original strand, 53770343 - 53770470
Alignment:
Q  785 actttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagt 884  Q
    |||||||||||||||||| |||||||   ||||| |||| |||||||||| ||||||||||||||||||  ||||| || |||||  |||| ||| ||||    
T  53770343 actttagtctctgactctgcacctcgcattcacataggttcctgactcagaattaaatacaaagaagtctatgactctgcacttccattatcactctagt 53770442  T
Q  885 ccttgacgttaaataattttgttaagtg 912  Q
    |  || |||||||||||| |||||||||    
T  53770443 ctctgccgttaaataattctgttaagtg 53770470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 821 - 919
Target Start/End: Original strand, 21621869 - 21621967
Alignment:
Q  821 ggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattttgttaagtgatgatgt 919  Q
    |||||||||||||||||||||||||||  ||||  ||| | || ||||| ||||| |||||||||| ||| ||||||||||| |||||| |||||||||    
T  21621869 ggtccctgactcaggattaaatacaaaatagtcattgaatgtgcacttccgttatcactttagtccctgatgttaaataattatgttaactgatgatgt 21621967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 812 - 909
Target Start/End: Complemental strand, 26173028 - 26172931
Alignment:
Q  812 tgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattttgttaa 909  Q
    ||||| |||||||| ||||||| ||||||||||||| ||||| |||||| || ||||| ||||| |||||||||| || ||||||| |||| ||||||    
T  26173028 tgtcagaaaggtccttgactcaagattaaatacaaataagtctctgactctgcacttccgttatcactttagtccatgccgttaaaaaattatgttaa 26172931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 776 - 856
Target Start/End: Original strand, 31844723 - 31844803
Alignment:
Q  776 caaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccct 856  Q
    ||||| || ||||||||| ||  |||| ||||||| ||||||| |||||||||||||||||||||||||||| ||||||||    
T  31844723 caaatagtcactttagtccctagctctgcacctcgctgtcacataggtccctgactcaggattaaatacaaacaagtccct 31844803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 835 - 919
Target Start/End: Original strand, 19050298 - 19050382
Alignment:
Q  835 gattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattttgttaagtgatgatgt 919  Q
    ||||||||||||||||||| | |||| || ||||| ||||| |||||||||   |||||||||||||| | ||||||||||||||    
T  19050298 gattaaatacaaagaagtctcggactctgcacttccgttatcactttagtctccgacgttaaataattctattaagtgatgatgt 19050382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 826 - 909
Target Start/End: Complemental strand, 32244760 - 32244677
Alignment:
Q  826 ctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattttgttaa 909  Q
    |||| ||||||||||| |||||| ||||| ||| | || || || ||||| |||||||||| ||||||||||||||||||||||    
T  32244760 ctgattcaggattaaagacaaagtagtccttgaatgtgcacatccgttatcactttagtccctgacgttaaataattttgttaa 32244677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 821 - 919
Target Start/End: Original strand, 50694795 - 50694893
Alignment:
Q  821 ggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattttgttaagtgatgatgt 919  Q
    |||||||||||||  |||||||| ||| ||||  |||| | || ||||| |||||  ||||||||| |||||||||| |||| ||||||||||||||||    
T  50694795 ggtccctgactcaaaattaaatataaataagtttctgattctgcacttccgttatctctttagtccctgacgttaaaaaattctgttaagtgatgatgt 50694893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 795 - 909
Target Start/End: Complemental strand, 24746176 - 24746064
Alignment:
Q  795 ctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgtt 894  Q
    ||||||||||| |||| |||||||||||| |||||   |||||||||||||||| | ||| | | | || ||||| ||||| |||||| |||  ||||||    
T  24746176 ctgactctacatctcgatgtcacaaaggttcctga--taggattaaatacaaagtactccttaaatgtgcacttccgttatcactttaatccacgacgtt 24746079  T
Q  895 aaataattttgttaa 909  Q
    |||||||||| ||||    
T  24746078 aaataattttattaa 24746064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 824 - 919
Target Start/End: Complemental strand, 24753635 - 24753540
Alignment:
Q  824 ccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattttgttaagtgatgatgt 919  Q
    ||||||||||  |||||||| |||| |   ||||| | || ||||||||||| ||||||||| ||  ||||||||||||||||||| |||||||||    
T  24753635 ccctgactcataattaaatataaagtaactcctgaatgtgcacttctgttatcactttagtcattcgcgttaaataattttgttaactgatgatgt 24753540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 816 - 919
Target Start/End: Complemental strand, 36453888 - 36453785
Alignment:
Q  816 acaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattttgttaagtgatg 915  Q
    |||||||||||||| | |||||||||| |||||||| | |||||| |  |||| || ||| ||||| |   |||||||||||||||||||||||  ||||    
T  36453888 acaaaggtccctgatttaggattaaatgcaaagaagcctctgactcttcacttttgctatcactttggcatttgacgttaaataattttgttaaaagatg 36453789  T
Q  916 atgt 919  Q
    ||||    
T  36453788 atgt 36453785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 785 - 856
Target Start/End: Complemental strand, 42392001 - 42391930
Alignment:
Q  785 actttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccct 856  Q
    |||||||||||||||||  ||||||  ||||||| ||||| |||||||| |||||||||||||  |||||||    
T  42392001 actttagtctctgactccgcacctcactgtcacataggtctctgactcatgattaaatacaaattagtccct 42391930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 785 - 919
Target Start/End: Complemental strand, 39870787 - 39870653
Alignment:
Q  785 actttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagt 884  Q
    |||||| ||||||||||| ||||||| ||||||| | || ||||| ||| ||||||| ||| |||| || |||||| || ||||| | ||| |||| |||    
T  39870787 actttaatctctgactctgcacctcgctgtcacataagttcctgagtcaagattaaacacagagaaatcactgactctgcacttccgatatcacttcagt 39870688  T
Q  885 ccttgacgttaaataattttgttaagtgatgatgt 919  Q
    |   | |||||||||||| |||| ||| |||||||    
T  39870687 ctcaggcgttaaataattctgttgagtaatgatgt 39870653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 798 - 843
Target Start/End: Original strand, 6317742 - 6317787
Alignment:
Q  798 actctacacctcgttgtcacaaaggtccctgactcaggattaaata 843  Q
    |||||| |||||||||||||||||||||||||||| | ||||||||    
T  6317742 actctatacctcgttgtcacaaaggtccctgactcggaattaaata 6317787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 845 - 890
Target Start/End: Original strand, 22674001 - 22674046
Alignment:
Q  845 aaagaagtccctgactatgtacttctgttattactttagtccttga 890  Q
    |||||||||||||||| |||||||| ||||||| ||||||||||||    
T  22674001 aaagaagtccctgactctgtacttccgttattagtttagtccttga 22674046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 798 - 882
Target Start/End: Original strand, 54574448 - 54574532
Alignment:
Q  798 actctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattacttta 882  Q
    ||||| || |||| ||||||| ||||| |||||||||||||||||||||| |||| | | ||| || ||||| ||||| ||||||    
T  54574448 actctgcatctcgctgtcacataggtctctgactcaggattaaatacaaataagttcttaactctgcacttccgttatcacttta 54574532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 852 - 919
Target Start/End: Original strand, 56041041 - 56041108
Alignment:
Q  852 tccctgactatgtacttctgttattactttagtccttgacgttaaataattttgttaagtgatgatgt 919  Q
    ||||| ||| ||||||| ||||||   |||||||  ||||||||||||||| ||||||||||||||||    
T  56041041 tccctaactgtgtacttttgttatagttttagtctgtgacgttaaataattatgttaagtgatgatgt 56041108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 785 - 846
Target Start/End: Original strand, 11269900 - 11269961
Alignment:
Q  785 actttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaa 846  Q
    ||||| |||| | ||| |||||||||||||||||||||||  ||| ||||| ||||||||||    
T  11269900 actttggtctttaactttacacctcgttgtcacaaaggtctatgattcagggttaaatacaa 11269961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 624 - 661
Target Start/End: Complemental strand, 34073993 - 34073956
Alignment:
Q  624 agataaaggatctaagtattacaaataaataagataaa 661  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  34073993 agataaaggatcaaagtgttacaaataaataagataaa 34073956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 2e-39; HSPs: 47)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 776 - 919
Target Start/End: Original strand, 7258276 - 7258419
Alignment:
Q  776 caaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttat 875  Q
    ||||| || ||||| ||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||| |||||| || |||||||||||    
T  7258276 caaatagtcactttggtccctgactctacacctcgttgtcacataggtccctaactcaggattaaatacaaataagtctctgactctgcacttctgttat 7258375  T
Q  876 tactttagtccttgacgttaaataattttgttaagtgatgatgt 919  Q
     |||||||||| |||||||||| || | ||||||||||||||||    
T  7258376 cactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 7258419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 804 - 919
Target Start/End: Original strand, 12220052 - 12220166
Alignment:
Q  804 cacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattt 903  Q
    |||||||||||||||||| | ||||||||| ||||||||| ||||||||| |||||| || ||||||| ||| |||||||| ||||||||||||||||||    
T  12220052 cacctcgttgtcacaaagattcctgactcaagattaaatagaaagaagtctctgactctgcacttctgatatcactttagt-cttgacgttaaataattt 12220150  T
Q  904 tgttaagtgatgatgt 919  Q
    ||||||||||||||||    
T  12220151 tgttaagtgatgatgt 12220166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 785 - 919
Target Start/End: Complemental strand, 12223812 - 12223678
Alignment:
Q  785 actttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagt 884  Q
    ||||||||| ||||| || ||| ||  ||||||| |||||||||||||||||||||||| |||||||||||||||| || | ||| ||||||||||||||    
T  12223812 actttagtccctgacactgcacatcaatgtcacataggtccctgactcaggattaaatataaagaagtccctgactctgcagttccgttattactttagt 12223713  T
Q  885 ccttgacgttaaataattttgttaagtgatgatgt 919  Q
    |  ||| ||||||||||| ||||||||||||||||    
T  12223712 cactgatgttaaataattctgttaagtgatgatgt 12223678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 777 - 919
Target Start/End: Complemental strand, 10899194 - 10899052
Alignment:
Q  777 aaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttatt 876  Q
    ||||||| ||||| ||| |||||||| ||||||| ||||||| || ||| |||| |||||||||||||||| ||||| |||||| || ||||| |||||     
T  10899194 aaattgttactttggtccctgactctgcacctcgctgtcacatagatccttgacccaggattaaatacaaataagtctctgactctgcacttccgttatc 10899095  T
Q  877 actttagtccttgacgttaaataattttgttaagtgatgatgt 919  Q
    |||||||||| |||||||||| || | ||||||||||||||||    
T  10899094 actttagtccctgacgttaaaaaaatctgttaagtgatgatgt 10899052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 776 - 919
Target Start/End: Original strand, 44333140 - 44333281
Alignment:
Q  776 caaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttat 875  Q
    ||||| || ||||| ||| |||||||| ||||||| ||||||| |||||||||||||| ||||||||||||| ||||| |||||| || ||||| |||||    
T  44333140 caaatagtcactttggtccctgactctgcacctcgctgtcacataggtccctgactcatgattaaatacaaataagtctctgactctgcacttccgttat 44333239  T
Q  876 tactttagtccttgacgttaaataattttgttaagtgatgatgt 919  Q
     ||  ||||||||||||||||| || | ||||||||||||||||    
T  44333240 cac--tagtccttgacgttaaaaaaatctgttaagtgatgatgt 44333281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 776 - 919
Target Start/End: Complemental strand, 8048906 - 8048763
Alignment:
Q  776 caaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttat 875  Q
    ||||| || ||||||  |||||||||| ||||||| || |||||||||| |||||||| ||||||||||||||||||| | |||| || ||||| |||||    
T  8048906 caaatagtcactttaccctctgactctgcacctcgctgacacaaaggtctctgactcaagattaaatacaaagaagtctccgactctgcacttccgttat 8048807  T
Q  876 tactttagtccttgacgttaaataattttgttaagtgatgatgt 919  Q
     |||||| || || ||||||||||||| | ||||||||||||||    
T  8048806 cactttaatctttaacgttaaataattctattaagtgatgatgt 8048763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 785 - 919
Target Start/End: Original strand, 39708113 - 39708247
Alignment:
Q  785 actttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagt 884  Q
    ||||||||||||||||||  ||||||  ||||||||||||| ||||||| |||| |||||||||||||| | |||| || ||||| ||||| ||||||||    
T  39708113 actttagtctctgactctgtacctcgccgtcacaaaggtccatgactcaagattgaatacaaagaagtcaccgactttgcacttccgttatcactttagt 39708212  T
Q  885 ccttgacgttaaataattttgttaagtgatgatgt 919  Q
    || ||| ||||||||||| ||||| ||||| ||||    
T  39708213 ccgtgatgttaaataattatgttatgtgataatgt 39708247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 785 - 919
Target Start/End: Original strand, 43457467 - 43457601
Alignment:
Q  785 actttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagt 884  Q
    ||||||||| |||| ||| || |||| |||| || |||||||||||||||||||||||||||| ||||||| |||| || ||||| ||||| ||||||||    
T  43457467 actttagtccctgattctgcagctcgctgtcgcataggtccctgactcaggattaaatacaaataagtccccgactctgcacttccgttatcactttagt 43457566  T
Q  885 ccttgacgttaaataattttgttaagtgatgatgt 919  Q
     | ||||||||| | ||| ||||||||||||||||    
T  43457567 tcatgacgttaagttattctgttaagtgatgatgt 43457601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 776 - 917
Target Start/End: Complemental strand, 48647565 - 48647424
Alignment:
Q  776 caaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttat 875  Q
    ||||| || ||||||| | |||| |||||| |||| | ||||| |||||||||||||||||||||||||||| ||||| || ||| || |||| ||||||    
T  48647565 caaatagtcactttagaccctgattctacagctcgctatcacataggtccctgactcaggattaaatacaaataagtctctcactctgcacttttgttat 48647466  T
Q  876 tactttagtccttgacgttaaataattttgttaagtgatgat 917  Q
     |||||||||| |||||||||| || | ||||||||||||||    
T  48647465 cactttagtccctgacgttaaaaaaatctgttaagtgatgat 48647424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 772 - 868
Target Start/End: Original strand, 34704906 - 34705002
Alignment:
Q  772 agaacaaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtactt 868  Q
    |||| |||| || ||||||||||| |||||| ||||||||||||||||||| | |||||||||||||||||||||||||||| |||||| |||||||    
T  34704906 agaataaatagtcactttagtctccgactctgcacctcgttgtcacaaaggcctctgactcaggattaaatacaaagaagtctctgactgtgtactt 34705002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 773 - 917
Target Start/End: Original strand, 46286501 - 46286645
Alignment:
Q  773 gaacaaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgt 872  Q
    |||||||| || ||||||||| |||||||| || |||| ||| | |||||||||||||||||||||||||||||| ||||| |||||| || ||||||||    
T  46286501 gaacaaatagtcactttagtccctgactcttcatctcgctgttagaaaggtccctgactcaggattaaatacaaataagtctctgactctgcacttctgt 46286600  T
Q  873 tattactttagtccttgacgttaaataattttgttaagtgatgat 917  Q
    ||| |||||| ||  |  ||||||| || | ||||||||||||||    
T  46286601 tatcactttaatctctaccgttaaaaaaatatgttaagtgatgat 46286645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 776 - 919
Target Start/End: Original strand, 48777257 - 48777401
Alignment:
Q  776 caaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttat 875  Q
    ||||| || |||||||||||||| ||| || |||| ||||||| | |||||||||||| ||||||||||||| || ||||||||| || ||||| |||||    
T  48777257 caaatagtcactttagtctctgattctgcagctcgctgtcacataagtccctgactcatgattaaatacaaataattccctgactctgcacttccgttat 48777356  T
Q  876 tactttagtccttgacg-ttaaataattttgttaagtgatgatgt 919  Q
     |||||||||| ||||| ||||| || | ||||||||||||||||    
T  48777357 cactttagtccatgacgtttaaaaaaatatgttaagtgatgatgt 48777401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 804 - 919
Target Start/End: Complemental strand, 13578414 - 13578300
Alignment:
Q  804 cacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattt 903  Q
    ||||||| ||||| |||| || ||||||||| |||||||||||| ||||| |||||| || ||||| ||||| |||||||||| |||||||||||||||     
T  13578414 cacctcgctgtcataaagatcactgactcagaattaaatacaaataagtcactgactctgcacttccgttatcactttagtcc-tgacgttaaataatta 13578316  T
Q  904 tgttaagtgatgatgt 919  Q
    ||||||||||||||||    
T  13578315 tgttaagtgatgatgt 13578300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 776 - 919
Target Start/End: Complemental strand, 19434056 - 19433913
Alignment:
Q  776 caaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttat 875  Q
    |||||||| ||||||||| || ||||| || |||||||||||||||||| |||| | ||||||||||| || |||||| | ||||  | ||||| |||||    
T  19434056 caaattgtcactttagtccctaactctccatctcgttgtcacaaaggtctctgatttaggattaaatataaggaagtcaccgactccgcacttcagttat 19433957  T
Q  876 tactttagtccttgacgttaaataattttgttaagtgatgatgt 919  Q
     |||||||||  || |||||||||||| ||||||||||||||||    
T  19433956 cactttagtctatggcgttaaataattctgttaagtgatgatgt 19433913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 813 - 919
Target Start/End: Complemental strand, 30925093 - 30924988
Alignment:
Q  813 gtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattttgttaagtg 912  Q
    |||||| |||||| ||||||||||||||||||||| ||||| ||||||||| ||||| |||||||||||||||  |||||||||| || | |||||||||    
T  30925093 gtcacataggtccttgactcaggattaaatacaaataagtctctgactatgcacttccgttattactttagtctctgacgttaaa-aaatctgttaagtg 30924995  T
Q  913 atgatgt 919  Q
    |||||||    
T  30924994 atgatgt 30924988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 785 - 919
Target Start/End: Original strand, 48646059 - 48646193
Alignment:
Q  785 actttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagt 884  Q
    ||||| ||| |||||| | ||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||| |  ||||| ||||| ||||||||    
T  48646059 actttggtccctgactatgcacctcgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactctacacttccgttatcactttagt 48646158  T
Q  885 ccttgacgttaaataattttgttaagtgatgatgt 919  Q
    |  || ||||||| || | | ||||||||||||||    
T  48646159 ctctgtcgttaaaaaaatatattaagtgatgatgt 48646193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 802 - 919
Target Start/End: Complemental strand, 7509567 - 7509450
Alignment:
Q  802 tacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataat 901  Q
    |||||||||||||||||||||||  ||| ||| ||||||||| ||||||||| | || | || ||||| ||||||||||||  || ||||||||||||||    
T  7509567 tacacctcgttgtcacaaaggtctttgattcatgattaaatataaagaagtctcagattctgcacttccgttattactttaacccctgacgttaaataat 7509468  T
Q  902 tttgttaagtgatgatgt 919  Q
    ||||||||||||| ||||    
T  7509467 tttgttaagtgattatgt 7509450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 812 - 912
Target Start/End: Complemental strand, 8375669 - 8375569
Alignment:
Q  812 tgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattttgttaagt 911  Q
    ||||||| |||||||||||||| ||||||||||||||||||  |||||| || ||||| ||||| | ||||||||  |||||||||||||||||||||||    
T  8375669 tgtcacataggtccctgactcatgattaaatacaaagaagtttctgactctgcacttccgttatcaatttagtccgcgacgttaaataattttgttaagt 8375570  T
Q  912 g 912  Q
    |    
T  8375569 g 8375569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 795 - 919
Target Start/End: Original strand, 35727719 - 35727842
Alignment:
Q  795 ctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgtt 894  Q
    |||||||| ||||||| ||||||| |||||||||||||||||||||||| ||| ||||| |||||| || || || ||||| |||||||||| |||||||    
T  35727719 ctgactctgcacctcgctgtcacataggtccctgactcaggattaaatataaataagtctctgactctgcacatccgttatcactttagtcc-tgacgtt 35727817  T
Q  895 aaataattttgttaagtgatgatgt 919  Q
    ||| |  | ||||||||||||||||    
T  35727818 aaaaatctctgttaagtgatgatgt 35727842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 777 - 900
Target Start/End: Original strand, 8374916 - 8375039
Alignment:
Q  777 aaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttatt 876  Q
    |||| |||| ||||||| |||||||| ||||||| ||||||| ||||| ||||||||| |||||||||||| ||||  |||| | || ||||| |||||     
T  8374916 aaatggtgattttagtccctgactctgcacctcgctgtcacataggtctctgactcagaattaaatacaaaaaagtttctgattttgcacttccgttatc 8375015  T
Q  877 actttagtccttgacgttaaataa 900  Q
    ||||||||| ||||||||||||||    
T  8375016 actttagtctttgacgttaaataa 8375039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 796 - 919
Target Start/End: Original strand, 42477402 - 42477524
Alignment:
Q  796 tgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgtta 895  Q
    ||||||| |||||||||||| || ||||| |||||||||||||||||||||| |||| ||||||| || ||||| ||||| | |||| ||| ||||||||    
T  42477402 tgactctgcacctcgttgtcgcataggtctctgactcaggattaaatacaaataagt-cctgactctgcacttccgttatcattttaatccctgacgtta 42477500  T
Q  896 aataattttgttaagtgatgatgt 919  Q
    || || | ||||||||||||||||    
T  42477501 aaaaaatatgttaagtgatgatgt 42477524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 807 - 916
Target Start/End: Complemental strand, 34889014 - 34888905
Alignment:
Q  807 ctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattttgt 906  Q
    |||| ||||||||||||| || ||||| ||||||||| ||||| |||| | ||| || ||||| ||||| |||||||||||||||||| ||||||| |||    
T  34889014 ctcgctgtcacaaaggtctctcactcatgattaaatataaagatgtccttaactctgcacttccgttatcactttagtccttgacgtttaataattatgt 34888915  T
Q  907 taagtgatga 916  Q
    ||||||||||    
T  34888914 taagtgatga 34888905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 807 - 919
Target Start/End: Complemental strand, 7259775 - 7259663
Alignment:
Q  807 ctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattttgt 906  Q
    |||| |||||||  |||| |||| ||||||||||||||||| |||||||||||| |  ||||| ||||| |||||||||| |||||||||| || | |||    
T  7259775 ctcgctgtcacatgggtctctgattcaggattaaatacaaataagtccctgactctacacttccgttatcactttagtccctgacgttaaaaaaatctgt 7259676  T
Q  907 taagtgatgatgt 919  Q
    |||||||||||||    
T  7259675 taagtgatgatgt 7259663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 825 - 909
Target Start/End: Complemental strand, 8879616 - 8879532
Alignment:
Q  825 cctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattttgttaa 909  Q
    |||||||||||||||||||||||| ||| ||||| | || | ||||||||| |||||||||| ||||||||||||||||||||||    
T  8879616 cctgactcaggattaaatacaaagtagttcctgaatgtgcatttctgttatcactttagtccctgacgttaaataattttgttaa 8879532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 823 - 919
Target Start/End: Original strand, 44529076 - 44529172
Alignment:
Q  823 tccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattttgttaagtgatgatgt 919  Q
    ||||||||||| ||||||||||||| ||||| | ||||    ||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||    
T  44529076 tccctgactcatgattaaatacaaataagtctccgactcaacacttctgttatcactttagtccctgacgttaaataattttgttaagcgatgatgt 44529172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 804 - 919
Target Start/End: Complemental strand, 48788766 - 48788651
Alignment:
Q  804 cacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattt 903  Q
    ||||||| ||||||| ||||||||||||||  |||||||| ||| ||||| |||||| || ||||| ||||| |||||||||  |||||||||| || ||    
T  48788766 cacctcgctgtcacataggtccctgactcataattaaatataaataagtctctgactctgcacttccgttatcactttagtctctgacgttaaaaaaatt 48788667  T
Q  904 tgttaagtgatgatgt 919  Q
    ||||| ||||||||||    
T  48788666 tgttaggtgatgatgt 48788651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 776 - 919
Target Start/End: Complemental strand, 5930254 - 5930112
Alignment:
Q  776 caaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttat 875  Q
    ||||| || |||||||||||| ||| | ||| ||| | |||||||||||||| |||||||||||||||| ||||| |    |||| || ||||| |||||    
T  5930254 caaatggtcactttagtctcttactttgcacttcgctatcacaaaggtccctaactcaggattaaatac-aagaaattttcgactgtgcacttccgttat 5930156  T
Q  876 tactttagtccttgacgttaaataattttgttaagtgatgatgt 919  Q
     |||||||||| || | |||||||||| ||||||||||||||||    
T  5930155 cactttagtccctgccattaaataattctgttaagtgatgatgt 5930112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 776 - 919
Target Start/End: Complemental strand, 44334571 - 44334429
Alignment:
Q  776 caaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttat 875  Q
    ||||| || ||||||||  |||| ||| || |||| ||| ||| |||||||||||||| ||||||||| ||| |||||||||||| || |||||  ||||    
T  44334571 caaatagtcactttagttcctgattctgcagctcgctgttacataggtccctgactcatgattaaatataaataagtccctgactctgcacttccattat 44334472  T
Q  876 tactttagtccttgacgttaaataattttgttaagtgatgatgt 919  Q
     |||||||||| |||| ||||| || | ||||||||||||||||    
T  44334471 cactttagtccctgacattaaa-aaatatgttaagtgatgatgt 44334429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 785 - 902
Target Start/End: Complemental strand, 33607736 - 33607619
Alignment:
Q  785 actttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagt 884  Q
    |||||||||||| ||| |  || ||| ||| ||||||||| |||| ||||||||||||||||||||||| |||| | || ||||| ||||| | |||||     
T  33607736 actttagtctctaactatgtacttcgatgttacaaaggtctctgattcaggattaaatacaaagaagtctctgattctgcacttccgttatcattttaga 33607637  T
Q  885 ccttgacgttaaataatt 902  Q
    || |||||||||||||||    
T  33607636 ccctgacgttaaataatt 33607619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 794 - 914
Target Start/End: Original strand, 24287499 - 24287619
Alignment:
Q  794 tctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgt 893  Q
    |||||||||| ||||| ||||||||||||||| |||||||  ||||| || |||| ||  | ||| | || ||||  ||||| |||||||||||||||||    
T  24287499 tctgactctatacctcattgtcacaaaggtccgtgactcataattaattataaagtagctcatgaatgtgcacttaagttatcactttagtccttgacgt 24287598  T
Q  894 taaataattttgttaagtgat 914  Q
    ||||||||| |||||| ||||    
T  24287599 taaataattatgttaattgat 24287619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 807 - 919
Target Start/End: Complemental strand, 35729177 - 35729065
Alignment:
Q  807 ctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattttgt 906  Q
    |||| ||||||| |||||| ||||| ||||||| ||||||| ||||| |||||| || ||||| | ||| ||| |||||| |||| |||||||| | |||    
T  35729177 ctcgctgtcacataggtccttgacttaggattacatacaaataagtcactgactctgcacttccgctatcactgtagtccctgacattaaataaatctgt 35729078  T
Q  907 taagtgatgatgt 919  Q
    |||||||||||||    
T  35729077 taagtgatgatgt 35729065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 828 - 919
Target Start/End: Complemental strand, 45584566 - 45584475
Alignment:
Q  828 gactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattttgttaagtgatgatgt 919  Q
    |||||||||||||||||||| ||| |  ||||| || ||||| ||||| |||||||||| |||||||||| || | ||||||||||||||||    
T  45584566 gactcaggattaaatacaaataagccaatgactctgcacttccgttatcactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 45584475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 785 - 854
Target Start/End: Original strand, 21062827 - 21062896
Alignment:
Q  785 actttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtcc 854  Q
    ||||||||| |||||| | ||||||| ||||| |||||||| ||||||||||||||||||| ||||||||    
T  21062827 actttagtccctgactttgcacctcgctgtcataaaggtccttgactcaggattaaatacatagaagtcc 21062896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 822 - 914
Target Start/End: Complemental strand, 44530687 - 44530595
Alignment:
Q  822 gtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattttgttaagtgat 914  Q
    ||||| |||||||||||||||| ||| ||||| |||||| || ||||| ||||| ||||||||| ||| |||||| | ||| |||||||||||    
T  44530687 gtccccgactcaggattaaatataaataagtctctgactctgcacttccgttatcactttagtcattggcgttaagttattctgttaagtgat 44530595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 791 - 853
Target Start/End: Original strand, 24844589 - 24844651
Alignment:
Q  791 gtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtc 853  Q
    |||||||||||| ||||||| |||||| ||||||| | |||||||||||||||||||| ||||    
T  24844589 gtctctgactctgcacctcgctgtcaccaaggtccataactcaggattaaatacaaagtagtc 24844651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 831 - 917
Target Start/End: Complemental strand, 25621788 - 25621702
Alignment:
Q  831 tcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattttgttaagtgatgat 917  Q
    |||||||||||||||||  |||   ||| | || ||||||||||| |||||||||  |||||||||||||||||||||| |||||||    
T  25621788 tcaggattaaatacaaattagtttttgaatgtgcacttctgttatcactttagtcactgacgttaaataattttgttaactgatgat 25621702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 865 - 919
Target Start/End: Original strand, 48249648 - 48249702
Alignment:
Q  865 acttctgttattactttagtccttgacgttaaataattttgttaagtgatgatgt 919  Q
    ||||||||||||| ||||||| |||| ||||||||||| ||||||||||||||||    
T  48249648 acttctgttattattttagtctttgatgttaaataattatgttaagtgatgatgt 48249702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 818 - 919
Target Start/End: Original strand, 32793214 - 32793315
Alignment:
Q  818 aaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattttgttaagtgatgat 917  Q
    ||||||| || ||| ||||||||||||||| |||||  ||| | || | ||| ||||| ||||||||| ||| |||||||||||| |||||| |||||||    
T  32793214 aaaggtctctaacttaggattaaatacaaataagtcattgattctgcatttcggttatcactttagtctttggcgttaaataattatgttaactgatgat 32793313  T
Q  918 gt 919  Q
    ||    
T  32793314 gt 32793315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 818 - 919
Target Start/End: Complemental strand, 6680614 - 6680512
Alignment:
Q  818 aaaggtccctgactcaggattaaa-tacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattttgttaagtgatga 916  Q
    |||||| | |||||||| |||||| ||||||||| ||   || |||| |||||| |||| ||||||||| |||| ||||||||||| ||||||||| |||    
T  6680614 aaaggttcttgactcagaattaaaatacaaagaaatcttcgattatgcacttctattatcactttagtctttgatgttaaataattctgttaagtgctga 6680515  T
Q  917 tgt 919  Q
    |||    
T  6680514 tgt 6680512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 791 - 848
Target Start/End: Complemental strand, 2677893 - 2677836
Alignment:
Q  791 gtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaag 848  Q
    |||| |||||||  ||||||||||||||||||||  ||||||| ||||||||||||||    
T  2677893 gtctttgactctgtacctcgttgtcacaaaggtctatgactcatgattaaatacaaag 2677836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 812 - 919
Target Start/End: Complemental strand, 24288952 - 24288845
Alignment:
Q  812 tgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattttgttaagt 911  Q
    |||||||||| || || |||||||||||| ||||||| ||||| ||| | || |||||  |||| |||||| ||  || ||||| |||||| |||||| |    
T  24288952 tgtcacaaagatctctaactcaggattaattacaaagtagtccttgaatgtgcacttccattatcactttattctctggcgttatataattctgttaact 24288853  T
Q  912 gatgatgt 919  Q
    ||||||||    
T  24288852 gatgatgt 24288845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 776 - 883
Target Start/End: Original strand, 45583685 - 45583792
Alignment:
Q  776 caaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttat 875  Q
    ||||| || ||||||||| |||| ||| ||  ||| | ||||| ||||||||||||||| |||||||||| | |||| ||||| | || ||||| |||||    
T  45583685 caaatagtcactttagtccctgattctgcagttcgctatcacataggtccctgactcagaattaaatacagataagttcctgattctgcacttccgttat 45583784  T
Q  876 tactttag 883  Q
     |||||||    
T  45583785 cactttag 45583792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 796 - 886
Target Start/End: Complemental strand, 385713 - 385623
Alignment:
Q  796 tgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtcc 886  Q
    ||||||| || |||||||||||| |||||||| ||||| |||| ||||||||| |||   ||| |||| |||||| |||| | ||||||||    
T  385713 tgactctgcatctcgttgtcacagaggtccctaactcatgattgaatacaaagtagtttatgaatatgcacttctattatcagtttagtcc 385623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 865 - 919
Target Start/End: Original strand, 33060900 - 33060954
Alignment:
Q  865 acttctgttattactttagtccttgacgttaaataattttgttaagtgatgatgt 919  Q
    ||||| ||||| |||||||||  ||||||||||||||| |||||| |||||||||    
T  33060900 acttccgttatcactttagtctctgacgttaaataattctgttaaatgatgatgt 33060954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 624 - 661
Target Start/End: Complemental strand, 17961749 - 17961712
Alignment:
Q  624 agataaaggatctaagtattacaaataaataagataaa 661  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  17961749 agataaaggatcaaagtgttacaaataaataagataaa 17961712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 619 - 660
Target Start/End: Complemental strand, 21736471 - 21736430
Alignment:
Q  619 aaattagataaaggatctaagtattacaaataaataagataa 660  Q
    ||||||||||||||| | |||| |||||||||||||||||||    
T  21736471 aaattagataaaggaccaaagtgttacaaataaataagataa 21736430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 777 - 902
Target Start/End: Complemental strand, 34710548 - 34710423
Alignment:
Q  777 aaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttatt 876  Q
    ||||||| | |||||||| ||||||| || |||| ||||| ||| ||  |||| || | |||||||||||| ||||  || ||| | || |||||||||     
T  34710548 aaattgtcattttagtctttgactctccaactcgatgtcataaatgtttctgattcggaattaaatacaaataagttactaactctatatttctgttatc 34710449  T
Q  877 actttagtccttgacgttaaataatt 902  Q
    ||||||||| || || ||||||||||    
T  34710448 actttagtctttaacattaaataatt 34710423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 1e-34; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 776 - 919
Target Start/End: Original strand, 21069290 - 21069433
Alignment:
Q  776 caaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttat 875  Q
    ||||| || |||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||| |||||| ||||| || ||||||||| |    
T  21069290 caaatagtcactttagtctctgactctgcacctcgttgtcacagaggtctctgactcaggattaaatacaaataagtccttgactctgcacttctgtttt 21069389  T
Q  876 tactttagtccttgacgttaaataattttgttaagtgatgatgt 919  Q
     |||||| |   || ||||||| |||||||||||||||||||||    
T  21069390 cactttaatatatgccgttaaaaaattttgttaagtgatgatgt 21069433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 796 - 912
Target Start/End: Original strand, 16611749 - 16611865
Alignment:
Q  796 tgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgtta 895  Q
    ||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||| | |||| |||| ||||| ||||| |||||||||  ||||||||    
T  16611749 tgactctacacctcgctgtcacataggtctctgactcaggattaaatacaaagaagcctctgattatgcacttccgttatcactttagtctctgacgtta 16611848  T
Q  896 aataattttgttaagtg 912  Q
    ||||||| |||||||||    
T  16611849 aataattctgttaagtg 16611865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 794 - 919
Target Start/End: Original strand, 25590450 - 25590574
Alignment:
Q  794 tctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgt 893  Q
    ||||||||| ||||||| ||||||| ||||||||||||| |||||||||||||| ||||| |||| | || ||||||||||| |||||| ||  ||||||    
T  25590450 tctgactctgcacctcgctgtcacataggtccctgactc-ggattaaatacaaataagtctctgattctgcacttctgttatcactttaatctctgacgt 25590548  T
Q  894 taaataattttgttaagtgatgatgt 919  Q
    |||| |||||||||||||||||||||    
T  25590549 taaaaaattttgttaagtgatgatgt 25590574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 776 - 919
Target Start/End: Complemental strand, 9538171 - 9538028
Alignment:
Q  776 caaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttat 875  Q
    ||||| || ||||| ||| |||||||| || |||||||||| | |||||||||||||||||||||||||||||||||| |||| | || ||||| |||||    
T  9538171 caaatagtcactttggtccctgactctgcatctcgttgtcatataggtccctgactcaggattaaatacaaagaagtctctgattgtgcacttccgttat 9538072  T
Q  876 tactttagtccttgacgttaaataattttgttaagtgatgatgt 919  Q
     | |||||||  ||| ||||||||||| ||||||||||| ||||    
T  9538071 cattttagtctctgatgttaaataattatgttaagtgattatgt 9538028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 807 - 917
Target Start/End: Complemental strand, 546127 - 546017
Alignment:
Q  807 ctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattttgt 906  Q
    |||| ||||||| |||||||||||||||||||||||||| | |||||| ||||| || ||||| ||||| |||||||||| |||||||||| || |||||    
T  546127 ctcgctgtcacataggtccctgactcaggattaaatacagataagtccttgactctgcacttccgttatcactttagtccctgacgttaaaaaaatttgt 546028  T
Q  907 taagtgatgat 917  Q
    |||||||||||    
T  546027 taagtgatgat 546017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 773 - 919
Target Start/End: Original strand, 9537021 - 9537166
Alignment:
Q  773 gaacaaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgt 872  Q
    |||||||| |||||||||||| || ||||| ||||||| ||||||| ||||| |||||| || ||||||||||||||||| | ||||| || |||||  |    
T  9537021 gaacaaatggtgactttagtccctcactctgcacctcgctgtcacataggtctctgacttagaattaaatacaaagaagt-catgactgtgcacttccat 9537119  T
Q  873 tattactttagtccttgacgttaaataattttgttaagtgatgatgt 919  Q
    ||| |||||||||  ||||||||||||||| || |||||||||||||    
T  9537120 tatcactttagtcactgacgttaaataattatggtaagtgatgatgt 9537166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 807 - 919
Target Start/End: Original strand, 4592893 - 4593005
Alignment:
Q  807 ctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattttgt 906  Q
    |||| ||||||| | |||||||||||| ||||||||||||| |||||||||||| || ||||| ||||| |||||||||| |||||||||| || | |||    
T  4592893 ctcgctgtcacataagtccctgactcaagattaaatacaaataagtccctgactctgcacttccgttatcactttagtccctgacgttaaaaaaatctgt 4592992  T
Q  907 taagtgatgatgt 919  Q
    |||||||||||||    
T  4592993 taagtgatgatgt 4593005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 795 - 919
Target Start/End: Complemental strand, 28591217 - 28591092
Alignment:
Q  795 ctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgtt 894  Q
    |||||||| ||||||| ||||||| |||||||||||||||||||||||||||| || ||||||||| || |||||  |||| ||||||||||  ||||||    
T  28591217 ctgactctgcacctcgctgtcacataggtccctgactcaggattaaatacaaataaatccctgactctgcacttcctttatcactttagtccccgacgtt 28591118  T
Q  895 a-aataattttgttaagtgatgatgt 919  Q
    | || || | ||||||||||||||||    
T  28591117 acaaaaaatctgttaagtgatgatgt 28591092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 776 - 919
Target Start/End: Original strand, 2464670 - 2464813
Alignment:
Q  776 caaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttat 875  Q
    ||||| || ||||||||| |||| ||| || |||| ||||| | |||||| ||||||| ||||||||||||| |||||||| ||| || ||||  |||||    
T  2464670 caaatagtcactttagtcactgattctgcagctcgctgtcatataggtccatgactcatgattaaatacaaataagtccctaactctgcacttacgttat 2464769  T
Q  876 tactttagtccttgacgttaaataattttgttaagtgatgatgt 919  Q
     |||||||||  |||||||||| || ||||||||||||||||||    
T  2464770 cactttagtctctgacgttaaaaaaatttgttaagtgatgatgt 2464813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 776 - 919
Target Start/End: Original strand, 8074452 - 8074594
Alignment:
Q  776 caaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttat 875  Q
    ||||| || ||||||||| |||| | | || |||| ||||||| | |||||||||||||||||||||||||| |||||||||||| || ||||| |||||    
T  8074452 caaatagtcactttagtccctgattatgcagctcgctgtcacataagtccctgactcaggattaaatacaaataagtccctgactctgcacttccgttat 8074551  T
Q  876 tactttagtccttgacgttaaataattttgttaagtgatgatgt 919  Q
     |||||||| | |||||||||| || |  |||||||||||||||    
T  8074552 cactttagttcctgacgttaaa-aaatcggttaagtgatgatgt 8074594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 798 - 919
Target Start/End: Original strand, 32640311 - 32640432
Alignment:
Q  798 actctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaa 897  Q
    ||||| ||||||  ||||||| ||| || | ||||||||||||||||||| |||||||| ||| |  ||||||||||| |||||||||  ||||||||||    
T  32640311 actctgcacctcactgtcacataggaccataactcaggattaaatacaaataagtccctaactctaaacttctgttatcactttagtctctgacgttaaa 32640410  T
Q  898 taattttgttaagtgatgatgt 919  Q
     || ||||||||||||||||||    
T  32640411 aaaatttgttaagtgatgatgt 32640432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 776 - 918
Target Start/End: Complemental strand, 2466896 - 2466753
Alignment:
Q  776 caaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttat 875  Q
    ||||| || ||||| |||||||||||| ||||||| | ||||| |||||  ||| ||||||||||||| ||| |||||||| ||| || ||||| |||||    
T  2466896 caaatagtcactttggtctctgactctgcacctcgctatcacataggtcattgattcaggattaaataaaaataagtccctaactctgcacttccgttat 2466797  T
Q  876 tactttagtccttgacgtt-aaataattttgttaagtgatgatg 918  Q
     |||||||||| ||||||| ||| || | |||||||||||||||    
T  2466796 cactttagtccctgacgttaaaaaaaatctgttaagtgatgatg 2466753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 804 - 919
Target Start/End: Original strand, 19182979 - 19183094
Alignment:
Q  804 cacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattt 903  Q
    ||||||| ||||||| ||||| |||||||||||||||||||||| |||| ||||||| |  ||||| ||||| |||||||||||||   ||||| || |     
T  19182979 cacctcgctgtcacataggtctctgactcaggattaaatacaaataagttcctgactctacacttccgttatcactttagtccttgcgattaaaaaaata 19183078  T
Q  904 tgttaagtgatgatgt 919  Q
    ||||||||||||||||    
T  19183079 tgttaagtgatgatgt 19183094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 807 - 919
Target Start/End: Complemental strand, 32641817 - 32641705
Alignment:
Q  807 ctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattttgt 906  Q
    |||||||||||  |||||||| ||||| ||||||||||||| ||||  |||||| || ||||| ||||| |||||| ||| |||||||||| || | |||    
T  32641817 ctcgttgtcacgtaggtcccttactcaagattaaatacaaataagttgctgactctgcacttccgttatcactttaatccctgacgttaaaaaaatatgt 32641718  T
Q  907 taagtgatgatgt 919  Q
    |||||||||||||    
T  32641717 taagtgatgatgt 32641705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 785 - 872
Target Start/End: Original strand, 18400200 - 18400287
Alignment:
Q  785 actttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgt 872  Q
    ||||||||| |||||||| ||||||  ||||||| |||||| ||||||||||||||||| ||||||||| |||||| || ||||||||    
T  18400200 actttagtccctgactctgcacctcactgtcacataggtccttgactcaggattaaataaaaagaagtcactgactctgcacttctgt 18400287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 813 - 919
Target Start/End: Complemental strand, 19186305 - 19186199
Alignment:
Q  813 gtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattttgttaagtg 912  Q
    |||||| |||||||||||| ||||||||||||||| ||||| |||||| |  | ||| ||||| ||||||||||||| |||||||  | | ||||||| |    
T  19186305 gtcacataggtccctgacttaggattaaatacaaacaagtctctgactctacatttccgttatcactttagtccttgtcgttaaaacaatctgttaagcg 19186206  T
Q  913 atgatgt 919  Q
    |||||||    
T  19186205 atgatgt 19186199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 785 - 914
Target Start/End: Original strand, 18004648 - 18004777
Alignment:
Q  785 actttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagt 884  Q
    ||||||||| |||||||| ||||||  ||||||||| |||  |  || ||||||||||||||||| |||  ||||| || ||||| ||||| ||||||||    
T  18004648 actttagtccctgactctgcacctcactgtcacaaaagtctatagcttaggattaaatacaaagaggtctatgactctgcacttccgttatcactttagt 18004747  T
Q  885 ccttgacgttaaataattttgttaagtgat 914  Q
    |  ||| |||||||| || |||||||||||    
T  18004748 ctctgatgttaaatagttatgttaagtgat 18004777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 776 - 919
Target Start/End: Complemental strand, 14891265 - 14891126
Alignment:
Q  776 caaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttat 875  Q
    ||||| || ||||| ||| || ||||| ||||||| ||||||| ||||| |||||||| |||||||| |||    ||| |||||| |  ||||| |||||    
T  14891265 caaatagtcactttggtccctcactctgcacctcgctgtcacataggtctctgactcatgattaaatgcaa----gtctctgactctacacttccgttat 14891170  T
Q  876 tactttagtccttgacgttaaataattttgttaagtgatgatgt 919  Q
     |||||||||  |||||||||| || | ||||||||||||||||    
T  14891169 cactttagtctctgacgttaaaaaaatatgttaagtgatgatgt 14891126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 785 - 919
Target Start/End: Original strand, 16979002 - 16979136
Alignment:
Q  785 actttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagt 884  Q
    |||||||||  ||||| | ||||| | || ||||||||||  |||||||| ||||||| |||| |||||||| ||| |||||||  ||||| | ||||||    
T  16979002 actttagtccttgactttgcaccttgctgccacaaaggtcattgactcagaattaaatgcaaataagtccctaactctgtacttacgttatcattttagt 16979101  T
Q  885 ccttgacgttaaataattttgttaagtgatgatgt 919  Q
    |  | ||||||| | ||| ||||||||||||||||    
T  16979102 ctctaacgttaagttattctgttaagtgatgatgt 16979136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 820 - 917
Target Start/End: Complemental strand, 40612737 - 40612640
Alignment:
Q  820 aggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattttgttaagtgatgat 917  Q
    |||||||||||||||||||||||||| | |  | ||||||| || ||||| ||||| |||||| | | |||||||||| || | ||||||||||||||    
T  40612737 aggtccctgactcaggattaaatacagatattttcctgactctgcacttccgttatcactttaattcctgacgttaaaaaaatctgttaagtgatgat 40612640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 795 - 919
Target Start/End: Original strand, 544669 - 544792
Alignment:
Q  795 ctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgtt 894  Q
    |||||||| ||| |||| |||| | ||||| |||||||||||||||||||||| ||||| |||||| || ||||| ||||| | ||||||   |||| ||    
T  544669 ctgactctgcacttcgt-gtcagataggtctctgactcaggattaaatacaaataagtcactgactctgcacttccgttataaatttagtttctgacatt 544767  T
Q  895 aaataattttgttaagtgatgatgt 919  Q
    ||| || | ||||||||||| ||||    
T  544768 aaaaaaatatgttaagtgattatgt 544792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 796 - 919
Target Start/End: Complemental strand, 8075935 - 8075812
Alignment:
Q  796 tgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgtta 895  Q
    ||||||| ||||||| ||| | | || ||||||| ||| ||||||||||||| ||||  |||| | || ||||  ||||| |||||||||| |||||||     
T  8075935 tgactctgcacctcgctgttagatagatccctgattcaagattaaatacaaaaaagtatctgattctgcactttcgttatcactttagtccctgacgttt 8075836  T
Q  896 aataattttgttaagtgatgatgt 919  Q
    || || | ||||||||||||||||    
T  8075835 aaaaaatctgttaagtgatgatgt 8075812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 624 - 661
Target Start/End: Original strand, 7180714 - 7180751
Alignment:
Q  624 agataaaggatctaagtattacaaataaataagataaa 661  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  7180714 agataaaggatcaaagtgttacaaataaataagataaa 7180751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 812 - 845
Target Start/End: Complemental strand, 13651206 - 13651173
Alignment:
Q  812 tgtcacaaaggtccctgactcaggattaaataca 845  Q
    ||||||| ||||||||||||||||||||||||||    
T  13651206 tgtcacataggtccctgactcaggattaaataca 13651173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 624 - 661
Target Start/End: Complemental strand, 27551753 - 27551716
Alignment:
Q  624 agataaaggatctaagtattacaaataaataagataaa 661  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  27551753 agataaaggatcaaagtgttacaaataaataagataaa 27551716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 2e-33; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 790 - 919
Target Start/End: Complemental strand, 5965550 - 5965421
Alignment:
Q  790 agtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttg 889  Q
    ||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||| || ||||| ||||| |||||||||  ||    
T  5965550 agtctctgattttacacctcgttgtcacaaatgtccctgactcaggattaaatacaaagaagtctttgactctgcacttccgttatcactttagtctctg 5965451  T
Q  890 acgttaaataattttgttaagtgatgatgt 919  Q
    ||||||||| ||| |||||||| |||||||    
T  5965450 acgttaaatgattatgttaagtaatgatgt 5965421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 776 - 919
Target Start/End: Complemental strand, 32898567 - 32898424
Alignment:
Q  776 caaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttat 875  Q
    ||||| || ||||||||| |||||||| || |||  ||||||| |||||||||||| ||||||||||||||| |||||||||||| || ||||| |||||    
T  32898567 caaatagtcactttagtccctgactctgcaactcactgtcacataggtccctgacttaggattaaatacaaataagtccctgactctgcacttccgttat 32898468  T
Q  876 tactttagtccttgacgttaaataattttgttaagtgatgatgt 919  Q
     |||||||||| |||||||||| || | ||||||||||||||||    
T  32898467 cactttagtccctgacgttaaaaaaatctgttaagtgatgatgt 32898424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 807 - 919
Target Start/End: Original strand, 35177427 - 35177539
Alignment:
Q  807 ctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattttgt 906  Q
    |||| ||||||| ||||||||||||| |||||||||||||| |||||||||||| || ||||| ||||| |||||||||| ||||||||||  | | |||    
T  35177427 ctcgctgtcacataggtccctgactccggattaaatacaaataagtccctgactctgcacttccgttatcactttagtccctgacgttaaaataatctgt 35177526  T
Q  907 taagtgatgatgt 919  Q
    |||||||||||||    
T  35177527 taagtgatgatgt 35177539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 776 - 919
Target Start/End: Complemental strand, 35178926 - 35178784
Alignment:
Q  776 caaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttat 875  Q
    ||||| || ||||| ||| |||||||| ||| ||| ||||| |  ||||||||||||||||||||||||||| |||||||||| | || ||||| |||||    
T  35178926 caaatagtcactttggtccctgactctgcacatcgctgtcatattggtccctgactcaggattaaatacaaataagtccctgattctgcacttccgttat 35178827  T
Q  876 tactttagtccttgacgttaaataattttgttaagtgatgatgt 919  Q
     |||||||||| |||||||||| || | ||||||||||||||||    
T  35178826 cactttagtccctgacgttaaa-aaatctgttaagtgatgatgt 35178784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 808 - 919
Target Start/End: Complemental strand, 5738113 - 5738002
Alignment:
Q  808 tcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattttgtt 907  Q
    ||||||| ||| |||||| ||||||| ||||||||||||||||||   ||||| |||||||| ||||| |||| |||| ||| |||||||||||| ||||    
T  5738113 tcgttgtgacataggtccatgactcaagattaaatacaaagaagttattgactctgtacttccgttatcacttcagtctttggcgttaaataattctgtt 5738014  T
Q  908 aagtgatgatgt 919  Q
    ||||||||||||    
T  5738013 aagtgatgatgt 5738002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 795 - 919
Target Start/End: Original strand, 28005363 - 28005487
Alignment:
Q  795 ctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgtt 894  Q
    ||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||| || | ||  ||| || ||| |||||||||   || |||    
T  28005363 ctgactctacacctcgttgtcacaaagatccctgactcaggatcaaatacaaagtagtccccgaatgtgctcttatgatatcactttagtctccgatgtt 28005462  T
Q  895 aaataattttgttaagtgatgatgt 919  Q
    |||||||| ||| || |||||||||    
T  28005463 aaataattatgtgaattgatgatgt 28005487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 795 - 919
Target Start/End: Original strand, 28062666 - 28062790
Alignment:
Q  795 ctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgtt 894  Q
    ||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||| || | ||  ||| || ||| |||||||||   || |||    
T  28062666 ctgactctacacctcgttgtcacaaagatccctgactcaggatcaaatacaaagtagtccccgaatgtgctcttatgatatcactttagtctccgatgtt 28062765  T
Q  895 aaataattttgttaagtgatgatgt 919  Q
    |||||||| ||| || |||||||||    
T  28062766 aaataattatgtgaattgatgatgt 28062790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 785 - 919
Target Start/End: Complemental strand, 1953082 - 1952949
Alignment:
Q  785 actttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagt 884  Q
    ||||||||| |||| ||| || |||||||||| | || || |||||| ||||||| ||||||| |||||  ||||| |||||||| ||||| ||||||||    
T  1953082 actttagtccctgattctgcagctcgttgtcatatagatctctgact-aggattacatacaaataagtctatgactctgtacttccgttatcactttagt 1952984  T
Q  885 ccttgacgttaaataattttgttaagtgatgatgt 919  Q
    |  ||||||||||||| | ||||||||||||||||    
T  1952983 ctctgacgttaaataaatctgttaagtgatgatgt 1952949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 814 - 919
Target Start/End: Original strand, 28619028 - 28619133
Alignment:
Q  814 tcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattttgttaagtga 913  Q
    ||||||||||||||||| || |||||||||||||||| ||  ||||| || ||||  ||||| |||||||||   | |||||||||||||||||||||||    
T  28619028 tcacaaaggtccctgacccatgattaaatacaaagaaatcattgactctgcactttcgttatcactttagtctcggccgttaaataattttgttaagtga 28619127  T
Q  914 tgatgt 919  Q
    ||||||    
T  28619128 tgatgt 28619133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 791 - 916
Target Start/End: Complemental strand, 31075396 - 31075272
Alignment:
Q  791 gtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttga 890  Q
    |||||||||||| ||||||||||| |||||||| | || ||||| ||||||||||||  ||| ||||| |||||||| | ||||| |||||||||  |||    
T  31075396 gtctctgactctgcacctcgttgttacaaaggttcttggctcagcattaaatacaaaatagt-cctgaatatgtactcccgttatcactttagtcactga 31075298  T
Q  891 cgttaaataattttgttaagtgatga 916  Q
    |||||||||||| | |||| ||||||    
T  31075297 cgttaaataattatattaactgatga 31075272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 776 - 919
Target Start/End: Complemental strand, 10407706 - 10407563
Alignment:
Q  776 caaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttat 875  Q
    ||||| || |||||||||||||| ||| || |||  ||||||| |||||  ||||| ||||||||| ||||| |||||| | ||| || ||||| |||||    
T  10407706 caaatagtcactttagtctctgattctgcagctcactgtcacataggtcattgacttaggattaaacacaaataagtccataactttgcacttccgttat 10407607  T
Q  876 tactttagtccttgacgttaaataattttgttaagtgatgatgt 919  Q
     |||||||| | |||||||||| || | ||||||||||||||||    
T  10407606 cactttagttcctgacgttaaaaaaatctgttaagtgatgatgt 10407563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 805 - 919
Target Start/End: Original strand, 28524787 - 28524902
Alignment:
Q  805 acctcgttgtcacaaaggtccct-gactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattt 903  Q
    |||||||| | ||||||||| || ||||||||||||||||||||| | ||| ||| | || ||||| ||||| | |||||||  ||||||||||||||||    
T  28524787 acctcgttattacaaaggtctcttgactcaggattaaatacaaagtaatccttgaatgtgcacttccgttatcattttagtctctgacgttaaataattt 28524886  T
Q  904 tgttaagtgatgatgt 919  Q
    |||||| |||||||||    
T  28524887 tgttaactgatgatgt 28524902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 785 - 919
Target Start/End: Original strand, 30134576 - 30134710
Alignment:
Q  785 actttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagt 884  Q
    |||||||||  | ||||| ||||||| |||||||||||||||  ||||| ||||||||||||||||||   ||||| || ||||||||||| |||||| |    
T  30134576 actttagtccttaactctgcacctcgctgtcacaaaggtcccctactcatgattaaatacaaagaagtgtgtgactctgcacttctgttatcactttaat 30134675  T
Q  885 ccttgacgttaaataattttgttaagtgatgatgt 919  Q
       | |||||| |||||| ||||| ||||||||||    
T  30134676 atctaacgttatataattatgttaggtgatgatgt 30134710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 792 - 917
Target Start/End: Complemental strand, 28006701 - 28006576
Alignment:
Q  792 tctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgac 891  Q
    ||||||||||| ||| ||| |||  ||||||| ||||| |||| |||||||| |||| ||||| ||| | |||||||| ||||| ||||||  || ||||    
T  28006701 tctctgactctgcacttcgatgttgcaaaggttcctgaatcagaattaaatataaagtagtccttgaatgtgtacttccgttatcactttaacccctgac 28006602  T
Q  892 gttaaataattttgttaagtgatgat 917  Q
    ||||||||||| |||||| |||||||    
T  28006601 gttaaataattctgttaactgatgat 28006576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 792 - 917
Target Start/End: Complemental strand, 28064004 - 28063879
Alignment:
Q  792 tctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgac 891  Q
    ||||||||||| ||| ||| |||  ||||||| ||||| |||| |||||||| |||| ||||| ||| | |||||||| ||||| ||||||  || ||||    
T  28064004 tctctgactctgcacttcgatgttgcaaaggttcctgaatcagaattaaatataaagtagtccttgaatgtgtacttccgttatcactttaacccctgac 28063905  T
Q  892 gttaaataattttgttaagtgatgat 917  Q
    ||||||||||| |||||| |||||||    
T  28063904 gttaaataattctgttaactgatgat 28063879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 822 - 907
Target Start/End: Complemental strand, 28619621 - 28619536
Alignment:
Q  822 gtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattttgtt 907  Q
    |||||||||||||||||||||||||||| |||  ||||| || |||||| |||| |||||||||  |||| |||||||||||||||    
T  28619621 gtccctgactcaggattaaatacaaagaggtcattgactctgcacttctattatcactttagtctctgacattaaataattttgtt 28619536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 785 - 919
Target Start/End: Original strand, 31074004 - 31074138
Alignment:
Q  785 actttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagt 884  Q
    |||||| || |||||||| || || | ||||||||| ||| ||||||| ||||||||| ||||| |||  |||| | || ||||||||||| ||||||||    
T  31074004 actttaatccctgactctgcatcttgctgtcacaaaagtctctgactctggattaaatgcaaagtagtttctgaatgtgcacttctgttatcactttagt 31074103  T
Q  885 ccttgacgttaaataattttgttaagtgatgatgt 919  Q
    |  ||   ||||||||||||||||| |||||||||    
T  31074104 ctctggaattaaataattttgttaactgatgatgt 31074138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 826 - 919
Target Start/End: Original strand, 5736893 - 5736986
Alignment:
Q  826 ctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattttgttaagtgatgatgt 919  Q
    |||| |||| ||||||||||||||| || || ||| |  ||||  ||||| |||||||||| | ||||||||||||||||||||||||||||||    
T  5736893 ctgattcagaattaaatacaaagaaatctctaactctacactttcgttatcactttagtccctcacgttaaataattttgttaagtgatgatgt 5736986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 818 - 919
Target Start/End: Original strand, 45476205 - 45476306
Alignment:
Q  818 aaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattttgttaagtgatgat 917  Q
    |||||||| ||| |||| |||||||||||| ||||| |||||| || ||||||||||| |||||||||  |  ||||||| || | ||||||||||||||    
T  45476205 aaaggtccatgattcagaattaaatacaaataagtctctgactctgcacttctgttatcactttagtctctcccgttaaaaaaatctgttaagtgatgat 45476304  T
Q  918 gt 919  Q
    ||    
T  45476305 gt 45476306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 776 - 860
Target Start/End: Original strand, 41753999 - 41754083
Alignment:
Q  776 caaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgact 860  Q
    ||||| || ||||||||| |||  ||| ||||| | ||||||| |||||||||||||||||||||||| ||| ||||||||||||    
T  41753999 caaatagtcactttagtccctggttctgcaccttgctgtcacataggtccctgactcaggattaaatataaacaagtccctgact 41754083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 795 - 883
Target Start/End: Complemental strand, 41754898 - 41754810
Alignment:
Q  795 ctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttag 883  Q
    |||| ||| ||||||| ||||||| || || |||||||||||||||||||||| |||| ||||||| |  ||||| |||||||||||||    
T  41754898 ctgattctgcacctcgctgtcacatagatctctgactcaggattaaatacaaacaagttcctgactctacacttccgttattactttag 41754810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 796 - 899
Target Start/End: Complemental strand, 12637860 - 12637757
Alignment:
Q  796 tgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgtta 895  Q
    ||||| ||||| ||||||  |||||||||||| |||||||||| ||||||||| ||| ||||| | || ||||| ||||| ||||||||||  ||| |||    
T  12637860 tgactatacacttcgttgcaacaaaggtccctaactcaggattgaatacaaagtagttcctgaatgtgcacttccgttatcactttagtccccgacatta 12637761  T
Q  896 aata 899  Q
    ||||    
T  12637760 aata 12637757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 796 - 914
Target Start/End: Original strand, 9625211 - 9625329
Alignment:
Q  796 tgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgtta 895  Q
    ||||||||||| ||||||||||||||  | |||||| ||||||||| |||||| ||| | ||| |||| |||||  |||| ||||||||| ||   ||||    
T  9625211 tgactctacacgtcgttgtcacaaagaccactgacttaggattaaacacaaagtagtacttgaatatgcacttccattatcactttagtctttagtgtta 9625310  T
Q  896 aataattttgttaagtgat 914  Q
    ||||||| |||||| ||||    
T  9625311 aataattatgttaactgat 9625329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 791 - 907
Target Start/End: Original strand, 24198950 - 24199066
Alignment:
Q  791 gtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttga 890  Q
    |||||||| |||||| |||| |||||||||||||  ||| |||||||||||||||||| | ||  ||| | || ||||| ||||| ||||||||| ||      
T  24198950 gtctctgattctacatctcgctgtcacaaaggtctttgattcaggattaaatacaaagtaatcattgaatgtgcacttccgttatcactttagtcttttt 24199049  T
Q  891 cgttaaataattttgtt 907  Q
    |||| ||||||| ||||    
T  24199050 cgttgaataattatgtt 24199066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 826 - 880
Target Start/End: Original strand, 41121160 - 41121214
Alignment:
Q  826 ctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactt 880  Q
    |||||||| ||||||||||||||||||| ||||||||| |||||| |||| ||||    
T  41121160 ctgactcatgattaaatacaaagaagtctctgactatgcacttctattatcactt 41121214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 804 - 916
Target Start/End: Original strand, 33314890 - 33314999
Alignment:
Q  804 cacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattt 903  Q
    ||||||| |||| |||||||| |||||||| ||||||||||||| |||||   || | | |||||| ||||| |||||||   |||  |||||| ||||     
T  33314890 cacctcgctgtctcaaaggtctctgactcaagattaaatacaaataagtcatcgattctatacttcggttatcactttag---ttgctgttaaaaaattc 33314986  T
Q  904 tgttaagtgatga 916  Q
    |||||||||||||    
T  33314987 tgttaagtgatga 33314999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 807 - 897
Target Start/End: Original strand, 43190915 - 43191005
Alignment:
Q  807 ctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaa 897  Q
    |||||||||| || |||||||  |||| |||||||||||||  |||| |||  ||||||| |||||||| | |||||||  ||||||||||    
T  43190915 ctcgttgtcaaaacggtccctcgctcaagattaaatacaaaatagtctctgtatatgtacatctgttatcaatttagtctctgacgttaaa 43191005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 785 - 858
Target Start/End: Original strand, 59562 - 59635
Alignment:
Q  785 actttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctga 858  Q
    ||||||||| |||||| ||||||||| ||||||    |||||||||||||||| || ||||||  |||||||||    
T  59562 actttagtccctgactttacacctcgctgtcactttagtccctgactcaggataaactacaaaatagtccctga 59635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 796 - 897
Target Start/End: Original strand, 8569429 - 8569530
Alignment:
Q  796 tgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgtta 895  Q
    ||||||| ||||||| | |||||||||||  ||||||| |||||||||||||| |||   ||| | || ||||  ||||| | |||||||| ||||||||    
T  8569429 tgactcttcacctcgctctcacaaaggtctttgactcatgattaaatacaaagtagtttatgaatgtgcactttcgttatcagtttagtccctgacgtta 8569528  T
Q  896 aa 897  Q
    ||    
T  8569529 aa 8569530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 838 - 919
Target Start/End: Original strand, 10406269 - 10406350
Alignment:
Q  838 taaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattttgttaagtgatgatgt 919  Q
    |||||| ||| ||||| |||||| || |||||| |||| |||||||||| ||  |||||| || | ||||||||||||||||    
T  10406269 taaataaaaacaagtctctgactctgcacttctattatcactttagtccctggtgttaaaaaaatctgttaagtgatgatgt 10406350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 624 - 661
Target Start/End: Original strand, 29872339 - 29872376
Alignment:
Q  624 agataaaggatctaagtattacaaataaataagataaa 661  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  29872339 agataaaggatcaaagtgttacaaataaataagataaa 29872376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 623 - 664
Target Start/End: Original strand, 30088879 - 30088920
Alignment:
Q  623 tagataaaggatctaagtattacaaataaataagataaacga 664  Q
    ||||||||||| | |||| |||||||||||||||||||||||    
T  30088879 tagataaaggaccaaagtgttacaaataaataagataaacga 30088920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 624 - 661
Target Start/End: Original strand, 30555735 - 30555772
Alignment:
Q  624 agataaaggatctaagtattacaaataaataagataaa 661  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  30555735 agataaaggatcaaagtgttacaaataaataagataaa 30555772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 69; Significance: 2e-30; HSPs: 3)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 795 - 919
Target Start/End: Original strand, 79093 - 79217
Alignment:
Q  795 ctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgtt 894  Q
    |||||||| ||||||| ||||||| |||||| ||||||| ||||||||| |||||||||| ||||| || || || | ||| ||||||||| ||||||||    
T  79093 ctgactctgcacctcgctgtcacataggtccttgactcatgattaaataaaaagaagtccttgactttgcacctccgatatcactttagtctttgacgtt 79192  T
Q  895 aaataattttgttaagtgatgatgt 919  Q
    |||||||||||||||||||||||||    
T  79193 aaataattttgttaagtgatgatgt 79217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 776 - 919
Target Start/End: Complemental strand, 79805 - 79662
Alignment:
Q  776 caaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttat 875  Q
    ||||| || |||||| || |||||||  ||||||||||| ||| | || ||||||||| |||||||||||||||||||  ||||| || | |||| ||||    
T  79805 caaatagtcactttaatccctgactcggcacctcgttgttacataagttcctgactcatgattaaatacaaagaagtctttgactctgcatttctattat 79706  T
Q  876 tactttagtccttgacgttaaataattttgttaagtgatgatgt 919  Q
     | ||||||| |||||||||||||||||| ||||||||||||||    
T  79705 cattttagtctttgacgttaaataattttattaagtgatgatgt 79662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 787 - 860
Target Start/End: Complemental strand, 74424 - 74351
Alignment:
Q  787 tttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgact 860  Q
    ||||||| |||||||| || |||  ||||||| |||||||| ||||| |||||||||||||||||||| |||||    
T  74424 tttagtccctgactctgcaactcactgtcacataggtccctaactcatgattaaatacaaagaagtccttgact 74351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 2e-30; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 776 - 912
Target Start/End: Original strand, 5782415 - 5782551
Alignment:
Q  776 caaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttat 875  Q
    |||||||| | ||||||| |||||||| ||||||| ||||||| ||||| |||||||| ||||||||||||||||||| |||| |||| |||||  ||||    
T  5782415 caaattgtcattttagtccctgactctgcacctcgctgtcacataggtctctgactcatgattaaatacaaagaagtctctgattatgcacttcccttat 5782514  T
Q  876 tactttagtccttgacgttaaataattttgttaagtg 912  Q
     |||||||||  ||||||||||||||||| |||||||    
T  5782515 cactttagtctctgacgttaaataattttattaagtg 5782551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 795 - 919
Target Start/End: Complemental strand, 7945657 - 7945533
Alignment:
Q  795 ctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgtt 894  Q
    |||||||| ||||||| ||||||| |||| ||||||||||||||||||||||| ||||| ||||||||| ||||| ||||| |||||||||| |||||||    
T  7945657 ctgactctgcacctcgctgtcacataggttcctgactcaggattaaatacaaataagtctctgactatgcacttccgttatcactttagtccctgacgtt 7945558  T
Q  895 aaataattttgttaagtgatgatgt 919  Q
    ||| || | || |||||||||||||    
T  7945557 aaaaaaatatgctaagtgatgatgt 7945533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 772 - 919
Target Start/End: Original strand, 6612416 - 6612563
Alignment:
Q  772 agaacaaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctg 871  Q
    ||||||||| || ||||||||| |||||||| ||||||| ||| | ||| ||| |||||||| ||||||||||||| ||||| |||||| || |||||      
T  6612416 agaacaaatagtcactttagtccctgactctgcacctcgctgttataaatgtctctgactcatgattaaatacaaacaagtctctgactctgcacttcca 6612515  T
Q  872 ttattactttagtccttgacgttaaataattttgttaagtgatgatgt 919  Q
    |||| |||||| ||| ||||||||||||||||||||||||||| ||||    
T  6612516 ttatcactttaatccctgacgttaaataattttgttaagtgattatgt 6612563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 786 - 919
Target Start/End: Original strand, 9339657 - 9339790
Alignment:
Q  786 ctttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtc 885  Q
    |||||||| |||| ||| || |||||||| ||| |||||||||||||||||||||||||||| || |||| |||| || ||||| ||||| |||||||||    
T  9339657 ctttagtccctgattctgcagctcgttgttacataggtccctgactcaggattaaatacaaataaatccccgactctgcacttccgttatcactttagtc 9339756  T
Q  886 cttgacgttaaataattttgttaagtgatgatgt 919  Q
    | |||||||||| || | ||||||||||||||||    
T  9339757 cctgacgttaaaaaaatctgttaagtgatgatgt 9339790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 776 - 917
Target Start/End: Original strand, 10332987 - 10333128
Alignment:
Q  776 caaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttat 875  Q
    ||||| || ||||||||| |||||| | ||||||||||||||| |||||| ||| ||||||||||||| ||| |||||||| ||| || ||||| |||||    
T  10332987 caaatagtcactttagtccctgactttgcacctcgttgtcacataggtccttgattcaggattaaatataaataagtcccttactctgcacttccgttat 10333086  T
Q  876 tactttagtccttgacgttaaataattttgttaagtgatgat 917  Q
     | ||||||||||||||||||| || | ||||||||||||||    
T  10333087 cattttagtccttgacgttaaaaaaatctgttaagtgatgat 10333128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 792 - 919
Target Start/End: Original strand, 1407657 - 1407784
Alignment:
Q  792 tctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgac 891  Q
    ||||||||||| ||||| |||||||||||||||| ||||| | || |||||| |||| |||  |||| |||| |||| |||||| |||||||||| ||||    
T  1407657 tctctgactctgcaccttgttgtcacaaaggtccatgacttatgactaaatataaagtagtttctgaatatgcacttatgttatcactttagtccctgac 1407756  T
Q  892 gttaaataattttgttaagtgatgatgt 919  Q
    |||||||||||||||||| |||||||||    
T  1407757 gttaaataattttgttaactgatgatgt 1407784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 776 - 919
Target Start/End: Original strand, 22856681 - 22856824
Alignment:
Q  776 caaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttat 875  Q
    ||||| || ||||||||| |||||||| |||| |||||| |||||| | | ||||||||||||||||||||||||||| || ||| || ||||| |||||    
T  22856681 caaatggtcactttagtcactgactctgcaccacgttgttacaaagattcttgactcaggattaaatacaaagaagtctctaactctgcacttccgttat 22856780  T
Q  876 tactttagtccttgacgttaaataattttgttaagtgatgatgt 919  Q
     |||||||||   |||||||||||||| ||||||||||| ||||    
T  22856781 cactttagtctccgacgttaaataattatgttaagtgattatgt 22856824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 804 - 917
Target Start/End: Original strand, 8975188 - 8975301
Alignment:
Q  804 cacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattt 903  Q
    ||||| |||||||||||||||||||||||| ||||||||| |||| ||||| ||| |||| ||||  ||||| ||||||||| ||| |||||||||||||    
T  8975188 caccttgttgtcacaaaggtccctgactcaagattaaatataaagtagtccatgaatatgcactttcgttatcactttagtctttggcgttaaataattt 8975287  T
Q  904 tgttaagtgatgat 917  Q
    |||||| |||||||    
T  8975288 tgttaattgatgat 8975301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 814 - 919
Target Start/End: Complemental strand, 9341109 - 9341004
Alignment:
Q  814 tcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattttgttaagtga 913  Q
    ||||| |||||||||||||||||||||||||||| ||||| |||||| || ||||||||||| |||||||||  |||||||||| || | | ||||||||    
T  9341109 tcacataggtccctgactcaggattaaatacaaataagtctctgactttgcacttctgttatcactttagtctctgacgttaaaaaaatctattaagtga 9341010  T
Q  914 tgatgt 919  Q
    ||||||    
T  9341009 tgatgt 9341004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 826 - 919
Target Start/End: Complemental strand, 6614051 - 6613957
Alignment:
Q  826 ctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtcct-tgacgttaaataattttgttaagtgatgatgt 919  Q
    |||||||||||||||||||||| ||||| |||||| || ||||| ||||| | |||||||||  |||||||||||||||||||||||||||||||    
T  6614051 ctgactcaggattaaatacaaataagtctctgactctgcacttcagttatcattttagtcctccgacgttaaataattttgttaagtgatgatgt 6613957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 776 - 918
Target Start/End: Complemental strand, 34088583 - 34088449
Alignment:
Q  776 caaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttat 875  Q
    |||||||| ||||||||| ||||||||||| |||| |||||||||||||        | ||||||||||||||||||| |||||| || |||||   |||    
T  34088583 caaattgtcactttagtccctgactctacatctcgctgtcacaaaggtc--------atgattaaatacaaagaagtctctgactctgcacttccactat 34088492  T
Q  876 tactttagtccttgacgttaaataattttgttaagtgatgatg 918  Q
     |||||| |||||||| |||||||||| |||||||||||||||    
T  34088491 cactttaatccttgacattaaataattatgttaagtgatgatg 34088449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 787 - 919
Target Start/End: Original strand, 3117661 - 3117793
Alignment:
Q  787 tttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtcc 886  Q
    ||||||| || ||||| ||| ||||| ||||||||||| |||||||| |||||||||||||||| || |||||| |  ||||| ||||| |||||||       
T  3117661 tttagtccctaactcttcacatcgttatcacaaaggtctctgactcaagattaaatacaaagaaatctctgactctccacttccgttatcactttagcgt 3117760  T
Q  887 ttgacgttaaataattttgttaagtgatgatgt 919  Q
     ||| |||||||||||||||||| |||||||||    
T  3117761 ctgaagttaaataattttgttaattgatgatgt 3117793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 791 - 919
Target Start/End: Complemental strand, 52440666 - 52440539
Alignment:
Q  791 gtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttga 890  Q
    |||||||||| | ||| ||| ||||||| |||||||||| ||||||||||||| ||| ||||| |||||| || |||||  |||| |||||||| |||||    
T  52440666 gtctctgactttgcacatcgctgtcacataggtccctgagtcaggattaaatataaataagtctctgactctgcacttccattatcactttagt-cttga 52440568  T
Q  891 cgttaaataattttgttaagtgatgatgt 919  Q
    ||||||| || | ||||||||||||||||    
T  52440567 cgttaaaaaaatgtgttaagtgatgatgt 52440539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 776 - 919
Target Start/End: Complemental strand, 32665892 - 32665749
Alignment:
Q  776 caaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttat 875  Q
    ||||| || ||||||||| |||| ||| || |||| ||||||| ||||| |||||||| ||||||||||||| |||||  ||||| || ||||| |||||    
T  32665892 caaatagtcactttagtccctgattctgcagctcgctgtcacataggtctctgactcatgattaaatacaaataagtctttgactctgcacttccgttat 32665793  T
Q  876 tactttagtccttgacgttaaataattttgttaagtgatgatgt 919  Q
     |||||||||| || ||||| | || | ||||||||||||||||    
T  32665792 cactttagtccctggcgttacaaaaatctgttaagtgatgatgt 32665749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 785 - 916
Target Start/End: Complemental strand, 50107316 - 50107185
Alignment:
Q  785 actttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagt 884  Q
    ||||| |||||||| ||| ||||  ||| ||||||||||  |||| |||||||||||||||||  |||| |||| | || ||||| ||||| ||||||||    
T  50107316 actttggtctctgattctgcaccatgttatcacaaaggttactgattcaggattaaatacaaaatagtctctgaatgtgcacttccgttatcactttagt 50107217  T
Q  885 ccttgacgttaaataattttgttaagtgatga 916  Q
    ||||| |||||||||||| |||||| ||||||    
T  50107216 ccttggcgttaaataattatgttaactgatga 50107185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 785 - 885
Target Start/End: Original strand, 1001164 - 1001264
Alignment:
Q  785 actttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagt 884  Q
    |||||||||  ||||| | |||||||||| ||||||||||| |||||| ||||||||||||||| |||| |||| | || ||||||||||| | ||||||    
T  1001164 actttagtccatgactttgcacctcgttgccacaaaggtccatgactcgggattaaatacaaagtagtctctgaatgtgcacttctgttatcagtttagt 1001263  T
Q  885 c 885  Q
    |    
T  1001264 c 1001264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 804 - 912
Target Start/End: Complemental strand, 5783203 - 5783095
Alignment:
Q  804 cacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattt 903  Q
    ||||||| ||||||| || |||  ||||||| ||||||||||||||||||| ||||| || ||||| ||||| |||||||||  |  ||||||||||||     
T  5783203 cacctcgctgtcacatagatcctcgactcagaattaaatacaaagaagtccatgactctgcacttccgttatcactttagtcactagcgttaaataattc 5783104  T
Q  904 tgttaagtg 912  Q
    |||||||||    
T  5783103 tgttaagtg 5783095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 804 - 916
Target Start/End: Complemental strand, 11060878 - 11060766
Alignment:
Q  804 cacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattt 903  Q
    ||||||| |||||||||||||| |||||||  ||||||||||||  ||||||||| |  | ||||  ||||| ||||||||||  ||||||||||||||     
T  11060878 cacctcgctgtcacaaaggtccatgactcaaaattaaatacaaaatagtccctgaatgggcactttcgttatcactttagtccccgacgttaaataattc 11060779  T
Q  904 tgttaagtgatga 916  Q
    |||||| ||||||    
T  11060778 tgttaactgatga 11060766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 792 - 919
Target Start/End: Complemental strand, 10333292 - 10333165
Alignment:
Q  792 tctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgac 891  Q
    ||||||| ||| || |||| ||| ||| ||||| |||||||| ||||||||||||| ||||| |||||| || ||||| ||||| |||||||||  |  |    
T  10333292 tctctgattctgcagctcgctgttacataggtctctgactcaagattaaatacaaataagtctctgactctgcacttccgttatcactttagtctctagc 10333193  T
Q  892 gttaaataattttgttaagtgatgatgt 919  Q
    |||||| || | ||||||||||||||||    
T  10333192 gttaaaaaaatctgttaagtgatgatgt 10333165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 793 - 916
Target Start/End: Original strand, 11829927 - 11830050
Alignment:
Q  793 ctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacg 892  Q
    ||||||||||| | |||||||||||||||||| || ||||| |||||||||||||  ||||| ||  |||| | ||| ||||||| ||||| | ||||||    
T  11829927 ctctgactctatatctcgttgtcacaaaggtcactaactcaagattaaatacaaattagtccttgtatatgcatttccgttattagtttaggctttgacg 11830026  T
Q  893 ttaaataattttgttaagtgatga 916  Q
    ||||| | || |||||| ||||||    
T  11830027 ttaaaaacttatgttaactgatga 11830050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 807 - 914
Target Start/End: Original strand, 7944187 - 7944294
Alignment:
Q  807 ctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattttgt 906  Q
    |||| ||||||| ||||||||||||||  |||||||||||| |||||| ||||| || ||||  ||||| | |||||||| | |||||||| || | |||    
T  7944187 ctcgctgtcacataggtccctgactcaaaattaaatacaaataagtccttgactctgcactttcgttatcaatttagtccctaacgttaaaaaaatatgt 7944286  T
Q  907 taagtgat 914  Q
    ||||||||    
T  7944287 taagtgat 7944294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 856 - 919
Target Start/End: Complemental strand, 22857621 - 22857558
Alignment:
Q  856 tgactatgtacttctgttattactttagtccttgacgttaaataattttgttaagtgatgatgt 919  Q
    ||||| || ||||| ||||| |||||||||| ||||||||||||||| ||||||||||||||||    
T  22857621 tgactttgcacttccgttatcactttagtccatgacgttaaataattatgttaagtgatgatgt 22857558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 787 - 919
Target Start/End: Original strand, 33342428 - 33342560
Alignment:
Q  787 tttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtcc 886  Q
    |||||||||| ||||| || |||| ||||| ||| ||| |||| |||| |||||| |||||  ||| | ||| | || || |  ||||| |||||||||     
T  33342428 tttagtctctaactctgcaactcgatgtcataaaagtctctgattcagaattaaagacaaaatagttcatgaatgtgcacatacgttatcactttagtct 33342527  T
Q  887 ttgacgttaaataattttgttaagtgatgatgt 919  Q
     ||||||||||||||| ||||||||||||||||    
T  33342528 ctgacgttaaataattatgttaagtgatgatgt 33342560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 785 - 860
Target Start/End: Original strand, 44019996 - 44020071
Alignment:
Q  785 actttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgact 860  Q
    ||||| ||| |||||| | || |||||||||||||| ||| |||||||| ||||||||| ||||||||| ||||||    
T  44019996 actttggtccctgactttgcaactcgttgtcacaaaagtctctgactcaagattaaatataaagaagtctctgact 44020071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 822 - 884
Target Start/End: Original strand, 25037925 - 25037987
Alignment:
Q  822 gtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagt 884  Q
    |||||||||||| ||||||||||||||||||| |||||| || ||||  ||||| ||||||||    
T  25037925 gtccctgactcatgattaaatacaaagaagtcactgactctggacttacgttatcactttagt 25037987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 822 - 884
Target Start/End: Original strand, 25043137 - 25043199
Alignment:
Q  822 gtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagt 884  Q
    |||||||||||| ||||||||||||||||||| |||||| || ||||  ||||| ||||||||    
T  25043137 gtccctgactcatgattaaatacaaagaagtcactgactctggacttacgttatcactttagt 25043199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 810 - 916
Target Start/End: Original strand, 39977367 - 39977473
Alignment:
Q  810 gttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattttgttaa 909  Q
    ||||||||||| ||| ||||||||||||||||||||||  ||||  ||| | || | |||||||||||  ||||||| ||| |||||||  ||||| |||    
T  39977367 gttgtcacaaatgtctctgactcaggattaaatacaaattagtcattgaatgtgcatttctgttattagcttagtccctgatgttaaatttttttgctaa 39977466  T
Q  910 gtgatga 916  Q
     ||||||    
T  39977467 ctgatga 39977473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 796 - 848
Target Start/End: Complemental strand, 18897992 - 18897940
Alignment:
Q  796 tgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaag 848  Q
    ||||||| || ||| |||||||||||||| |||||||||||||||||| ||||    
T  18897992 tgactctgcaactcattgtcacaaaggtctctgactcaggattaaatataaag 18897940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 819 - 919
Target Start/End: Original strand, 39725383 - 39725483
Alignment:
Q  819 aaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattttgttaagtgatgatg 918  Q
    ||||| ||| ||||| |||||||||||||  |||   ||| |||| ||||| ||||||| ||||||| ||||||||||| | ||||||| | ||||||||    
T  39725383 aaggttcctaactcatgattaaatacaaaatagttattgaatatgcacttccgttattagtttagtctttgacgttaaaaacttttgttgactgatgatg 39725482  T
Q  919 t 919  Q
    |    
T  39725483 t 39725483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 807 - 907
Target Start/End: Original strand, 44719382 - 44719482
Alignment:
Q  807 ctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattttgt 906  Q
    ||||||||||||||| || || ||||||||||||||| |||| |||   ||| |||| ||||| ||||| | |||||||  || | ||||||||||||||    
T  44719382 ctcgttgtcacaaagatctctaactcaggattaaatataaagtagtttatgaatatgcacttccgttatcattttagtctctgtctttaaataattttgt 44719481  T
Q  907 t 907  Q
    |    
T  44719482 t 44719482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 624 - 661
Target Start/End: Complemental strand, 5719506 - 5719469
Alignment:
Q  624 agataaaggatctaagtattacaaataaataagataaa 661  Q
    ||||||| || |||||||||||||||||||||||||||    
T  5719506 agataaaagacctaagtattacaaataaataagataaa 5719469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 624 - 685
Target Start/End: Original strand, 8945155 - 8945216
Alignment:
Q  624 agataaaggatctaagtattacaaataaataagataaacgatctatggtgtaattttatcta 685  Q
    |||||||||| |||| | |||||||||||||||||||| ||  | |||||||||||| ||||    
T  8945155 agataaaggacctaactgttacaaataaataagataaaagacttttggtgtaattttgtcta 8945216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 624 - 661
Target Start/End: Complemental strand, 25656817 - 25656780
Alignment:
Q  624 agataaaggatctaagtattacaaataaataagataaa 661  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  25656817 agataaaggatcaaagtgttacaaataaataagataaa 25656780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 796 - 853
Target Start/End: Complemental strand, 26519204 - 26519147
Alignment:
Q  796 tgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtc 853  Q
    |||||||| | |||||||||| |||||||||| |||| || |||||||||||| ||||    
T  26519204 tgactctaaatctcgttgtcataaaggtccctaactccgggttaaatacaaagtagtc 26519147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0767 (Bit Score: 66; Significance: 1e-28; HSPs: 1)
Name: scaffold0767
Description:

Target: scaffold0767; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 777 - 918
Target Start/End: Original strand, 5601 - 5742
Alignment:
Q  777 aaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttatt 876  Q
    ||||||| ||||||||| || ||| | ||||||||||| ||||| ||| ||||||||| ||||||||||||||||||||||||| |  ||||| |||||     
T  5601 aaattgtcactttagtcactcactttgcacctcgttgtgacaaatgtctctgactcagaattaaatacaaagaagtccctgactctacacttccgttatc 5700  T
Q  877 actttagtccttgacgttaaataattttgttaagtgatgatg 918  Q
    |||||||||  || |||||||||||| ||||| |||||||||    
T  5701 actttagtctctggcgttaaataattatgttatgtgatgatg 5742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 4e-28; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 776 - 912
Target Start/End: Original strand, 31218956 - 31219092
Alignment:
Q  776 caaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttat 875  Q
    ||||| || |||||| ||||||||||| ||||||| ||||||| |||||| | |||||||||||||||||||||||| ||||||| || ||||| |||||    
T  31218956 caaatggtcactttaatctctgactctgcacctcgctgtcacataggtccttaactcaggattaaatacaaagaagttcctgactctgcacttccgttat 31219055  T
Q  876 tactttagtccttgacgttaaataattttgttaagtg 912  Q
     |||||| ||| ||| ||||||||||| | |||||||    
T  31219056 cactttaatccctgatgttaaataattctcttaagtg 31219092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 785 - 912
Target Start/End: Complemental strand, 31219273 - 31219146
Alignment:
Q  785 actttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagt 884  Q
    |||||| || |||||||| ||||||| ||||||| |||||  | |||||||||||||||||||||||| |||||||    ||||| ||||| ||||||||    
T  31219273 actttaatccctgactctgcacctcgctgtcacataggtcattaactcaggattaaatacaaagaagttcctgactcgacacttccgttatcactttagt 31219174  T
Q  885 ccttgacgttaaataattttgttaagtg 912  Q
    |  ||||||||||||||| | |||||||    
T  31219173 ctctgacgttaaataattctcttaagtg 31219146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 776 - 919
Target Start/End: Original strand, 23507950 - 23508092
Alignment:
Q  776 caaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttat 875  Q
    ||||| || ||||||||||||| |||||||||||  ||||||| |||| ||||| ||||||||||||||||| || ||  ||||| |  |||||  ||||    
T  23507950 caaatagtcactttagtctctg-ctctacacctccctgtcacataggttcctgattcaggattaaatacaaacaaatctatgactttacacttcctttat 23508048  T
Q  876 tactttagtccttgacgttaaataattttgttaagtgatgatgt 919  Q
     |||||||||| || ||||||||  |||||||||||||| ||||    
T  23508049 cactttagtccctgtcgttaaatttttttgttaagtgataatgt 23508092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 776 - 919
Target Start/End: Original strand, 30748000 - 30748143
Alignment:
Q  776 caaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttat 875  Q
    ||||| || ||||||||| |||| ||| ||||||| ||||||| |||||||||||| ||||||||||||||| ||||| |||||| |  ||||  |||||    
T  30748000 caaatagtcactttagtccctgattctgcacctcgctgtcacataggtccctgacttaggattaaatacaaacaagtctctgactctacactttcgttat 30748099  T
Q  876 tactttagtccttgacgttaaataattttgttaagtgatgatgt 919  Q
     |||||||||  || ||||||| ||   | ||||||||||||||    
T  30748100 cactttagtcgctgccgttaaaaaaaactattaagtgatgatgt 30748143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 816 - 919
Target Start/End: Original strand, 10855848 - 10855950
Alignment:
Q  816 acaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtccttgacgttaaataattttgttaagtgatg 915  Q
    |||||||||  |||||||||||||||||||||||||| | ||||  |  |||| ||||||  ||||||||| ||||||||||||||| |||||||||||     
T  10855848 acaaaggtctttgactcaggattaaatacaaagaagtac-tgaccgtacacttttgttatcgctttagtccctgacgttaaataattatgttaagtgatc 10855946  T
Q  916 atgt 919  Q
    ||||    
T  10855947 atgt 10855950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 794 - 853
Target Start/End: Complemental strand, 12676574 - 12676515
Alignment:
Q  794 tctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtc 853  Q
    ||||||||| |||||||||||||||| |||| ||| ||||||||||||||||||| ||||    
T  12676574 tctgactctgcacctcgttgtcacaatggtctctgtctcaggattaaatacaaagtagtc 12676515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 812 - 847
Target Start/End: Complemental strand, 6468867 - 6468832
Alignment:
Q  812 tgtcacaaaggtccctgactcaggattaaatacaaa 847  Q
    |||||||||||||||||||||| |||||||||||||    
T  6468867 tgtcacaaaggtccctgactcatgattaaatacaaa 6468832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 56; Significance: 1e-22; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 807 - 886
Target Start/End: Original strand, 116087 - 116166
Alignment:
Q  807 ctcgttgtcacaaaggtccctgactcaggattaaatacaaagaagtccctgactatgtacttctgttattactttagtcc 886  Q
    |||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||| ||||||||||    
T  116087 ctcgctgtcacataggtccctgactcaggattaaatacaaataagtccctgactatgcacttccgttatcactttagtcc 116166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 777 - 848
Target Start/End: Complemental strand, 36643 - 36573
Alignment:
Q  777 aaattgtgactttagtctctgactctacacctcgttgtcacaaaggtccctgactcaggattaaatacaaag 848  Q
    ||||||| ||||||||| ||||| || |||||||| |||||||||||| || |||| |||||||||||||||    
T  36643 aaattgtcactttagtccctgaccctgcacctcgt-gtcacaaaggtctctaactcgggattaaatacaaag 36573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 624 - 661
Target Start/End: Original strand, 4871 - 4908
Alignment:
Q  624 agataaaggatctaagtattacaaataaataagataaa 661  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  4871 agataaaggatcaaagtgttacaaataaataagataaa 4908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University