View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1944_low_11 (Length: 467)
Name: NF1944_low_11
Description: NF1944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1944_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 38 - 448
Target Start/End: Complemental strand, 55402661 - 55402238
Alignment:
| Q |
38 |
atcaatgctatgagcaaaaggtcaatgggaaaactcaattcttttgtgaggctcttaaatatgaga-------------atgttgtgagtataaatctca |
124 |
Q |
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| T |
55402661 |
atcaatgctatgagcaaaaggtcaatgggaaaactcaattcttttgtgaggctcttaaatatgagactaatgaatgataatgttgtgagtataaatctca |
55402562 |
T |
|
| Q |
125 |
aagggaatgccaatccaaaaacactaatctatttttgtgtgactaacgaataaaaagaagnnnnnnngactaatattaactgtgagattcactgcaaaac |
224 |
Q |
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| T |
55402561 |
aagggaatgccaatccaaaaagactaatctatttttgtttgactaacgaataaaaagaagaaaaaaagactaatattaactgtgagattcactgcaaaac |
55402462 |
T |
|
| Q |
225 |
ttattaataatcttgttaaacnnnnnnnggactcgtaatattgcactaccgttcatgagccgatgtcttcaacaacgttcactccacaacactttatttg |
324 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55402461 |
ttattaataatcttgttaaacaaaaaaaggactcgtaatattgcactaccgttcatgagccgatgtcttcaacaacgttcactccacaacactttatttg |
55402362 |
T |
|
| Q |
325 |
accaacctctcgacaaaaacacgagtgttgttgtgaccataaaatgaagaggtaattttaaaagactggtttattagatgaaagtgtttctagttgtaca |
424 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
55402361 |
accaacctctcgacaaaaacacaagtgttgttgtgaccataaaatgaagaggtaattttaaaagactagtttattagatgaaagtgtttctagttataca |
55402262 |
T |
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| Q |
425 |
agctccagttttgaggcgagtctt |
448 |
Q |
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||||||||||||||||||| |||| |
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| T |
55402261 |
agctccagttttgaggcgaatctt |
55402238 |
T |
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