View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1944_low_12 (Length: 456)
Name: NF1944_low_12
Description: NF1944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1944_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 18 - 441
Target Start/End: Complemental strand, 1571999 - 1571563
Alignment:
| Q |
18 |
cattctccttcaaacctcaattgtcttccactcatcatcaatttcccaagatcccatttcaaacaaccaccact----------ttttgttcctccgatg |
107 |
Q |
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| T |
1571999 |
cattctccttcaaaacccaattgtcttccactcatcatcaatttcccaagatcccatttcaaacaaccaccactaaccaccactttttgttcctccgatg |
1571900 |
T |
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| Q |
108 |
gcgccgcagctaatgcttctcctcaacaactcactactcccattgaattaagtatgtctctttcattaccacttatttatttatttatttatgccatatg |
207 |
Q |
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| T |
1571899 |
gcgccgcagctaatgcttctcctcaacaactcactactcccattgaattaagtatgtctctttcattaccacttatttatttatttatttatgccatatg |
1571800 |
T |
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| Q |
208 |
caacatagacacggacacatgtaatttgagaaaaaacatagttgaatgtaattatgtgtcgatgatgtatgacaagcatttaattagaagtgttggtgct |
307 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
1571799 |
cagaatagacacggacacatgtaatttgagaaaaaacatagttgaatgtaattatgtgtcgatgatgtctgacaaacatttaattagaagtgttggtgct |
1571700 |
T |
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| Q |
308 |
acaaagtt--cgagaattgacaacactagatcgtctagtcgtgctaccgcacggatcatat-cattgaataataataaataacttcaaaattataataaa |
404 |
Q |
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||||| || ||||||||||||||||||||||||||| |||||||||||||| | |||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
1571699 |
acaaactttacgagaattgacaacactagatcgtctattcgtgctaccgcactggtcatatacattgaataataataaataacttcaaaattataacaaa |
1571600 |
T |
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| Q |
405 |
caaacgcaactaacaataagaatgtcatggtaacaat |
441 |
Q |
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| T |
1571599 |
caaacgcaactaacaataagaatgtcatggtaacaat |
1571563 |
T |
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