View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1944_low_14 (Length: 449)
Name: NF1944_low_14
Description: NF1944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1944_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 36 - 432
Target Start/End: Original strand, 8452722 - 8453115
Alignment:
| Q |
36 |
aaaatgtaaactaaggaacaataggaaatacagcataatgatcatcaaattaaatgtaataaaaattcaaacctttatccctatcttgaacttgtaaccg |
135 |
Q |
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| T |
8452722 |
aaaatgtaaactaaggaacaataggaaatacaacataatgatcatcaaattaaatgtaataaaaattcaaacctttatccctatcttgaacttgtaaccg |
8452821 |
T |
|
| Q |
136 |
gcttgcaccaagatcaagttcaagttaaataattaatcaaaggccaaggatggatggatattggatactgaggagcatgataagagaaaaggcaacagtt |
235 |
Q |
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| T |
8452822 |
gcttgcaccaagatcaagttcaagttaaataattaatcaaaggccaaggatggatggatattggatactgaggagcatgataagagaaaaggcaacagtt |
8452921 |
T |
|
| Q |
236 |
ggtaaagtctgataaatccataatatttaagacattacaagaagaatgaagagcagataatattactttatagaggaaaaggatgtgtgaattttcacat |
335 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8452922 |
ggtaaagtctgataaatcc---atatttaagacattacaagaagaatgaagagcagataatattactttatagaggaaaaggatgtgtcaattttcacat |
8453018 |
T |
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| Q |
336 |
aatcatgcctcatgttgcttggaatatcagtactggtttctttttgtaagttggaatgaagggatttgctcaaatgtacaccagaagtagaacgaac |
432 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
8453019 |
aatcatgcctcatgttgcttggaatatcagtaatggtttctttttgtaagttggaatgaaaggatttgctcgaatgtacaccagaagtagaacgaac |
8453115 |
T |
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