View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1944_low_16 (Length: 431)
Name: NF1944_low_16
Description: NF1944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1944_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 10 - 416
Target Start/End: Complemental strand, 11045479 - 11045073
Alignment:
| Q |
10 |
gatgaaacgtaagaaaattcaagttaatagtctgaccagagataatttagaagcttatactattgatattagttctatacaaatcttgtaatgtttcaag |
109 |
Q |
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| T |
11045479 |
gatgaaacataagaaaattcaagtaaatagtctgaccagagataatttagaagcttgtactattgatattagttctatacaaatcttgtaatctttcaag |
11045380 |
T |
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| Q |
110 |
ctatcttcaagaatcttttcaaccatacttttgacaatatcctgcaatgtcacacagaaaaatttaaacaccatcaatttatttttattagaacttatat |
209 |
Q |
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| T |
11045379 |
ccatcttcaagaatcttttcaaccatacttttgacattatcctgaaatgtcacaaagacaaatttaaacaccatcaatttgttcttattagaacttatat |
11045280 |
T |
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| Q |
210 |
tagcataatatatcaaccatctaaaaatgcatgtatcatattgtagtaatttacaatcttttgaagtccccagtgatgtacacaaagttaaatttaaaga |
309 |
Q |
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| T |
11045279 |
tagcataatatatcaaccatcagaaaatgcatgtatcatattgtagtaatttacaatcttttgaattccccactaatgtacacaaagttgaatttgaaga |
11045180 |
T |
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| Q |
310 |
attgatagaaatattaatgttcaaatcccaattcaaaggaatttaaatatatttgagatttataaactgttttgagaagtacatgctctatgttccatat |
409 |
Q |
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| T |
11045179 |
attgatagaaatatttatgttcaaatcccaattcaaaggaatttaaatatatttgagatttataaactgttttgagaagtacatgctctctattccatat |
11045080 |
T |
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| Q |
410 |
attatgt |
416 |
Q |
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| T |
11045079 |
attatgt |
11045073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 35 - 184
Target Start/End: Complemental strand, 21573439 - 21573290
Alignment:
| Q |
35 |
aatagtctgaccagagataatttagaagcttatactattgatattagttctatacaaatcttgtaatgtttcaagctatcttcaagaatcttttcaacca |
134 |
Q |
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| T |
21573439 |
aatattctgaccagagataattgaaaggcctgtaatattgatactggttctgtacagatcttgtaattgttcatcgtatattcaagaaattttccagcca |
21573340 |
T |
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| Q |
135 |
tacttttgacaatatcctgcaatgtcacacagaaaaatttaaacaccatc |
184 |
Q |
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| T |
21573339 |
tactcttgacattatcctgcaatgtcacaaagatatgttaaaacaccatc |
21573290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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