View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1944_low_17 (Length: 427)
Name: NF1944_low_17
Description: NF1944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1944_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 19 - 405
Target Start/End: Original strand, 42941582 - 42941965
Alignment:
| Q |
19 |
cctgtggagaaggcaattagacttgttgtgattaaagagattaagggtgcacagtatggtgttcagattgagactgctgttagggaccgtttggcagccg |
118 |
Q |
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| T |
42941582 |
cctgtggagaaggcaattagacttgttgtgattaaagagattaagggtgcacagtatggtgttcagattgagactgctgttagggaccgtttggcagccg |
42941681 |
T |
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| Q |
119 |
atgacaaatatgaggatgaagaagaagaagctttggaaaaagtaattgaatttttccagtctaagtacttcaagaaacattcagtcatcacatatcattt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42941682 |
atgacaaatatgaggatgaagaagaagaagctttggaaaaagtaattgaatttttccagtctaagtacttcaagaaacattcagtcatcacatatcattt |
42941781 |
T |
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| Q |
219 |
cccagcaaactctccaactgctgaggtaaaataatagcaagcagcattaggcattggctaccttaattgatcctattcattttaggttgattttaggtca |
318 |
Q |
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||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42941782 |
cccagcaaactctccaactgctgaggtaa---agtagcaagcagcattaggcactggctaccttaattgatcctattcattttaagttgattttaggtca |
42941878 |
T |
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| Q |
319 |
acttattattaacaacaatgacattaatcgtcatgtcatttacagctgctacatatgagttttgaatttcatctggttacaaaatca |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
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| T |
42941879 |
acttattattaacaacaatgacattaatcgtcatgtcatttacaactgctacatatgagttttgaatttcatccggttacaaaatca |
42941965 |
T |
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