View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1944_low_2 (Length: 770)
Name: NF1944_low_2
Description: NF1944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1944_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 412 - 757
Target Start/End: Complemental strand, 18332155 - 18331810
Alignment:
| Q |
412 |
ttatcatatggtaaagaagcaagtatcgtagatcaaattgaacaaaaacagcgtccaaaactctaatcatcactcttgcgaagaagcgtcaaatacaatg |
511 |
Q |
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| T |
18332155 |
ttatcaaatggtcaagaagcaagtatggtagatcaaatttaacaaaaacagcgtccaaaactctaatcatcactcttgcaaagaagcgtcaaatacaatg |
18332056 |
T |
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| Q |
512 |
atcgtctgatcatcacggtcacaactcacaagagataaatgagcctctacctctgatacattatagacaaacagaaaagtatctgataaatcaagcatat |
611 |
Q |
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| T |
18332055 |
atcgtctgatcatcatggtcacaactcacaagagataaatgagcctctacctctgatacattatagacaaacagcaaagtatctgataaatcaagcatat |
18331956 |
T |
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| Q |
612 |
ggtatttctctttacgaataagcatataagctctacctctggtcaataaatataaaattcaaccatgcatcagcttgtgatgtaagatttgttcaaagac |
711 |
Q |
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| T |
18331955 |
ggtatttttctttacgaataagcatataagctctacctctggtcaataaatataaaattcaaccatgcatcagcttgtgatgtaagatttgttcaaagac |
18331856 |
T |
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| Q |
712 |
caagaaagttactgttaaatcactgtatgaggaatgaagaaattat |
757 |
Q |
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| T |
18331855 |
caagaaagttactgttaaatcactgtatgaggaatgaagaaattat |
18331810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 84 - 375
Target Start/End: Complemental strand, 18332483 - 18332192
Alignment:
| Q |
84 |
gttatacaaggactcagtgttgagctggaagaaacccacagatgaagaaatatcaatttgctcaactagtatcaattcgttaagcgaaatcccatttttg |
183 |
Q |
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| T |
18332483 |
gttatacaaggactcagtgttgagctggaagaaacccacaggtgaagaaatatcaatttgctcaactagtatcaattcgttaagtgaaatcccatttttg |
18332384 |
T |
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| Q |
184 |
aaaactctataaatagagcttcacttcaccattttcagcattctaccactccccaagcatagacaaactgagtgagacataggggaacttaggaagaagg |
283 |
Q |
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| T |
18332383 |
aaaactctataaatagagcttcacttcaccattttcaacattctaccactctccaagcatagacaaacagagtgagacataggagaacttaggaagaagg |
18332284 |
T |
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| Q |
284 |
tggagcatcaattctagtggattcgagtagctaagtttctcattgtgttggtattgggtatagtactttgttttattttatcaacaccactg |
375 |
Q |
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| T |
18332283 |
tggagcatcaattctagtggattcgagtagctaagtttctcattgtgttggtattgggtatagtagtttgttttattttatcaacaccactg |
18332192 |
T |
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