View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1944_low_21 (Length: 395)

Name: NF1944_low_21
Description: NF1944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1944_low_21
NF1944_low_21
[»] chr4 (8 HSPs)
chr4 (15-380)||(52347032-52347398)
chr4 (213-380)||(50729438-50729607)
chr4 (216-330)||(46680456-46680572)
chr4 (213-330)||(1231332-1231451)
chr4 (295-366)||(9948034-9948105)
chr4 (213-330)||(20802477-20802596)
chr4 (213-356)||(3649657-3649802)
chr4 (213-327)||(24002360-24002476)
[»] chr3 (8 HSPs)
chr3 (213-380)||(3964307-3964476)
chr3 (213-292)||(8648543-8648623)
chr3 (213-328)||(19906781-19906898)
chr3 (213-380)||(33364675-33364844)
chr3 (213-293)||(47958417-47958498)
chr3 (213-256)||(1344729-1344773)
chr3 (213-347)||(20609578-20609714)
chr3 (213-355)||(25927249-25927393)
[»] chr1 (6 HSPs)
chr1 (213-363)||(13994070-13994222)
chr1 (213-330)||(35387339-35387458)
chr1 (213-347)||(16704753-16704889)
chr1 (213-330)||(41967877-41967996)
chr1 (213-292)||(26733582-26733662)
chr1 (213-256)||(28340406-28340450)
[»] chr2 (8 HSPs)
chr2 (213-327)||(41366066-41366182)
chr2 (213-330)||(7258915-7259034)
chr2 (213-330)||(7761526-7761645)
chr2 (212-363)||(17540732-17540885)
chr2 (213-363)||(6896186-6896338)
chr2 (213-330)||(5278787-5278906)
chr2 (213-292)||(26418941-26419021)
chr2 (213-256)||(30326359-30326403)
[»] chr8 (9 HSPs)
chr8 (213-338)||(6386594-6386721)
chr8 (213-363)||(15001484-15001636)
chr8 (213-363)||(29610990-29611142)
chr8 (213-330)||(8673023-8673142)
chr8 (213-330)||(45446473-45446592)
chr8 (213-363)||(7591382-7591534)
chr8 (213-292)||(17805709-17805789)
chr8 (213-256)||(32020044-32020088)
chr8 (213-327)||(35225680-35225796)
[»] chr7 (6 HSPs)
chr7 (213-330)||(21784893-21785012)
chr7 (213-292)||(48699420-48699500)
chr7 (213-330)||(10932511-10932630)
chr7 (213-330)||(26994179-26994298)
chr7 (213-345)||(3922642-3922776)
chr7 (213-347)||(40753177-40753313)
[»] chr5 (7 HSPs)
chr5 (213-292)||(8560980-8561060)
chr5 (213-330)||(21739120-21739239)
chr5 (213-314)||(39918525-39918628)
chr5 (213-330)||(31644464-31644582)
chr5 (213-256)||(7208264-7208308)
chr5 (213-292)||(18470426-18470506)
chr5 (213-311)||(22432287-22432387)
[»] chr6 (1 HSPs)
chr6 (213-314)||(24203380-24203483)


Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-165; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 15 - 380
Target Start/End: Complemental strand, 52347398 - 52347032
Alignment:
Q  15 acaagtgacacaagcaagaaattgccnnnnnnn-cttctcttccattgttaaacttcgtagagatgcacgtctcttccattgttaatagagatgtaagcg 113  Q
    ||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||     
T  52347398 acaagtgacacaagcaagaaattgcctgttttttcttctcttccattgttaaacttcgtagagatgcacttctcttccattgttaatagagatgtaagct 52347299  T
Q  114 tccaaagagttggcaatgggatacctaagaggatttagatgatataacatacgtctcttctaacttaacatctgacaattttttatggcattaacaattt 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  52347298 tccaaagagttggcaatgggatacctaagaggatttagatgatataacatacgtctcttctaacttaatatctg-caattttttatggcattaacaattt 52347200  T
Q  214 tttggtattttagacaactttacttgaaacaaaaagttgtgctctagtttt-gtaaggaacaagaatttctgtttttgtccctctcttacctccagtttg 312  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||    
T  52347199 tttggtattttagacaactttacttggaacaaaaagttgtgctctagttttaaaaaggaacaagaatttctgtttttgtccctctcttacctccagtttg 52347100  T
Q  313 tcatgtccatgaaacagtcttataaagaaaacattatacaactgaaattgtcatgtcttatgcttcat 380  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  52347099 tcatgtccatgaaacagtcttataaagaaaacattatacaactgaaattggcatgtcttatgcttcat 52347032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 213 - 380
Target Start/End: Complemental strand, 50729607 - 50729438
Alignment:
Q  213 ttttggtattttagacaactt-tacttgaaacaaaaagttgtgctctagttttgtaaggaacaagaatttctgtttttgtc-cctctcttacctccagtt 310  Q
    ||||||||||||||||||||| ||| ||| ||||||||||||||| | |||| || |   |||| |||||| |||||||||   || ||| |||||||||    
T  50729607 ttttggtattttagacaacttgtacgtgagacaaaaagttgtgctgtggtttggtgatagacaaaaatttcagtttttgtcatgtcccttgcctccagtt 50729508  T
Q  311 tgtcatgtccatgaaacagtcttataaagaaaacattatacaactgaaattgtcatgtcttatgcttcat 380  Q
    |||  ||||| ||||||||| ||| |||  ||||| |  ||||||||| ||||  |||||| | ||||||    
T  50729507 tgttctgtccctgaaacagttttacaaatcaaacactggacaactgaagttgttctgtcttgtccttcat 50729438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 330
Target Start/End: Complemental strand, 46680572 - 46680456
Alignment:
Q  216 tggtattttagacaactt-tacttgaaacaaaaagttgtgctctagttttgtaaggaacaagaatttctgtttttgtcc-ctctcttacctccagtttgt 313  Q
    ||||||||||||||| || ||| ||| ||||||||||||||| | |||| |||||| |||| ||| |  ||||||||||  || ||| ||||||||||||    
T  46680572 tggtattttagacaatttgtacgtgagacaaaaagttgtgctgtggtttggtaagggacaaaaatatgagtttttgtcctgtcccttgcctccagtttgt 46680473  T
Q  314 catgtccatgaaacagt 330  Q
    | ||| | |||||||||    
T  46680472 cctgtacctgaaacagt 46680456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 213 - 330
Target Start/End: Original strand, 1231332 - 1231451
Alignment:
Q  213 ttttggtattttagacaactt-tacttgaaacaaaaagttgtgctctagttttgtaaggaacaagaatttctgtttttgtcc-ctctcttacctccagtt 310  Q
    ||||| ||||||||||||||| ||| ||  ||||||||||||||| | ||||||| ||| |||| ||| |  ||||||||||  |||||| |||||||||    
T  1231332 ttttgatattttagacaacttgtacgtgggacaaaaagttgtgctgtggttttgtgagggacaaaaatatgagtttttgtccagtctcttgcctccagtt 1231431  T
Q  311 tgtcatgtccatgaaacagt 330  Q
    | || ||| | |||||||||    
T  1231432 tatcctgtacctgaaacagt 1231451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 295 - 366
Target Start/End: Original strand, 9948034 - 9948105
Alignment:
Q  295 tctcttacctccagtttgtcatgtccatgaaacagtcttataaagaaaacattatacaactgaaattgtcat 366  Q
    |||||| |||| |||||||||||| | | ||||||| ||| |||  ||||||||||||| ||||||||||||    
T  9948034 tctcttgcctcaagtttgtcatgttccttaaacagttttacaaatcaaacattatacaattgaaattgtcat 9948105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 213 - 330
Target Start/End: Complemental strand, 20802596 - 20802477
Alignment:
Q  213 ttttggtattttagacaactt-tacttgaaacaaaaagttgtgctctagttttgtaaggaacaagaatttctgtttttgtcc-ctctcttacctccagtt 310  Q
    ||||||||||||||||||||| ||| ||  ||||||||||||| | | |||| || ||| |||| ||| |  ||||||||||  |||||| |||||||||    
T  20802596 ttttggtattttagacaacttgtacgtgggacaaaaagttgtgatgtggtttggtgagggacaaaaatatgagtttttgtcctgtctcttgcctccagtt 20802497  T
Q  311 tgtcatgtccatgaaacagt 330  Q
    |||| ||| | |||||||||    
T  20802496 tgtcctgtacctgaaacagt 20802477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 356
Target Start/End: Original strand, 3649657 - 3649802
Alignment:
Q  213 ttttggtattttagacaactt-tacttgaaacaaaaagttgtgctctagttttgtaaggaacaagaatttctgtttttgtcc-ctctcttacctccagtt 310  Q
    ||||||| ||||||||||||| ||| ||  ||||||||||||||| | |||| || ||| |||| |||||  ||||||||||  || ||| ||| |||||    
T  3649657 ttttggtgttttagacaacttgtacgtgggacaaaaagttgtgctgtggtttggtgagggacaaaaattttagtttttgtcctgtcccttgccttcagtt 3649756  T
Q  311 tgtcatgtccatgaaacagtcttataaagaaaacattatacaactg 356  Q
    |||  ||||| ||||||||| ||| |||  ||||| || |||||||    
T  3649757 tgttctgtccctgaaacagttttacaaatcaaacactagacaactg 3649802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 327
Target Start/End: Original strand, 24002360 - 24002476
Alignment:
Q  213 ttttggtattttagacaactt-tacttgaaacaaaaagttgtgctctagttttgtaaggaacaagaatttctgtttttgtcc-ctctcttacctccagtt 310  Q
    ||||||||||||||||||||| ||| ||  ||||||||||||||| | |||| || ||| |||| ||| |  ||||||||||  || ||| |||||||||    
T  24002360 ttttggtattttagacaacttgtacgtgggacaaaaagttgtgctgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctccagtt 24002459  T
Q  311 tgtcatgtccatgaaac 327  Q
    |||| ||| | ||||||    
T  24002460 tgtcctgtacctgaaac 24002476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 213 - 380
Target Start/End: Original strand, 3964307 - 3964476
Alignment:
Q  213 ttttggtattttagacaactt-tacttgaaacaaaaagttgtgctctagttttgtaaggaacaagaatttctgtttttgtccctctc-ttacctccagtt 310  Q
    ||||||||||||||||||||| ||| ||  ||||||||||||||| | |||| || ||| |||| |||||| ||||||||||   || || |||||| ||    
T  3964307 ttttggtattttagacaacttgtacatgggacaaaaagttgtgctgtggtttggtgagggacaaaaatttcagtttttgtccagttccttgcctccaatt 3964406  T
Q  311 tgtcatgtccatgaaacagtcttataaagaaaacattatacaactgaaattgtcatgtcttatgcttcat 380  Q
    |||||||||||||||||||| ||| |||  ||||| |  ||||||||| ||||  |||| ||| ||||||    
T  3964407 tgtcatgtccatgaaacagttttacaaatcaaacactggacaactgaagttgttctgtcctatccttcat 3964476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 213 - 292
Target Start/End: Complemental strand, 8648623 - 8648543
Alignment:
Q  213 ttttggtattttagacaactt-tacttgaaacaaaaagttgtgctctagttttgtaaggaacaagaatttctgtttttgtc 292  Q
    |||||||||||||||||| || ||||||  ||||||||||||| | |||||| || ||||||||||||||| |||||||||    
T  8648623 ttttggtattttagacaatttgtacttgtgacaaaaagttgtgatgtagtttagttaggaacaagaatttcagtttttgtc 8648543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 328
Target Start/End: Original strand, 19906781 - 19906898
Alignment:
Q  213 ttttggtattttagacaactt-tacttgaaacaaaaagttgtgctctagttttgtaaggaacaagaatttctgtttttgtcc-ctctcttacctccagtt 310  Q
    ||||||| ||||||||||||| ||| ||| ||||||||||||||| | |||| || ||| |||| |||||| ||||||||||  || ||| |||||||||    
T  19906781 ttttggtgttttagacaacttgtacgtgagacaaaaagttgtgctgtggtttggtgagggacaaaaatttcagtttttgtcctgtcccttgcctccagtt 19906880  T
Q  311 tgtcatgtccatgaaaca 328  Q
    |||  ||||| |||||||    
T  19906881 tgttctgtccctgaaaca 19906898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 213 - 380
Target Start/End: Complemental strand, 33364844 - 33364675
Alignment:
Q  213 ttttggtattttagacaactt-tacttgaaacaaaaagttgtgctctagttttgtaaggaacaagaatttctgtttttgtccc-tctcttacctccagtt 310  Q
    ||||| ||||||||||||||| ||| ||| ||||||||||||| | | ||||  | |||  ||| ||| || ||||||||||  |||||| |||||||||    
T  33364844 ttttgatattttagacaacttgtacgtgagacaaaaagttgtgatgtggtttgctgaggggcaaaaatatcagtttttgtcctgtctcttgcctccagtt 33364745  T
Q  311 tgtcatgtccatgaaacagtcttataaagaaaacattatacaactgaaattgtcatgtcttatgcttcat 380  Q
    |||| ||| | ||||||||| ||| ||| |||||| |  ||||||||| ||||  |||||| | ||||||    
T  33364744 tgtcctgtacctgaaacagttttacaaataaaacactggacaactgaagttgttctgtcttgtccttcat 33364675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 293
Target Start/End: Complemental strand, 47958498 - 47958417
Alignment:
Q  213 ttttggtattttagacaactt-tacttgaaacaaaaagttgtgctctagttttgtaaggaacaagaatttctgtttttgtcc 293  Q
    ||||||||||||||||||||| ||| ||  ||||||||||||||| |||||| || ||| |||| ||| |  ||||||||||    
T  47958498 ttttggtattttagacaacttgtacgtgggacaaaaagttgtgctgtagtttggtgagggacaaaaatatgagtttttgtcc 47958417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 256
Target Start/End: Complemental strand, 1344773 - 1344729
Alignment:
Q  213 ttttggtattttagacaactt-tacttgaaacaaaaagttgtgct 256  Q
    ||||||||||||||||||||| ||| ||| |||||||||||||||    
T  1344773 ttttggtattttagacaacttgtacgtgagacaaaaagttgtgct 1344729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 347
Target Start/End: Complemental strand, 20609714 - 20609578
Alignment:
Q  213 ttttggtattttagacaactt-tacttgaaacaaaaagttgtgctctagttttgtaaggaacaagaatttctgtttttgtcc-ctctcttacctccagtt 310  Q
    ||||||||||||||||||||| ||| ||  ||||||||||||||| | |||| || ||| |||| ||| |  ||||||||||  || ||| || ||||||    
T  20609714 ttttggtattttagacaacttgtacgtgggacaaaaagttgtgctgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgccaccagtt 20609615  T
Q  311 tgtcatgtccatgaaacagtcttataaagaaaacatt 347  Q
    |||| ||| | ||||||||| ||| |||  |||||||    
T  20609614 tgtcctgtacctgaaacagttttacaaatcaaacatt 20609578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 355
Target Start/End: Complemental strand, 25927393 - 25927249
Alignment:
Q  213 ttttggtattttagacaactt-tacttgaaacaaaaagttgtgctctagttttgtaaggaacaagaatttctgtttttgtcc-ctctcttacctccagtt 310  Q
    ||||||||||||||||||||| ||| ||  ||||||||||||| | |  ||| |||||| |||| ||| |  ||||||||||  || ||| |||||||||    
T  25927393 ttttggtattttagacaacttgtacgtgggacaaaaagttgtgttgtgttttggtaagggacaaaaatatgagtttttgtcctgtcccttgcctccagtt 25927294  T
Q  311 tgtcatgtccatgaaacagtcttataaagaaaacattatacaact 355  Q
    |||| |||   ||||||||| ||| |||  |||||||| ||||||    
T  25927293 tgtcctgtatttgaaacagttttacaaatcaaacattagacaact 25927249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 213 - 363
Target Start/End: Complemental strand, 13994222 - 13994070
Alignment:
Q  213 ttttggtattttagacaactt-tacttgaaacaaaaagttgtgctctagttttgtaaggaacaagaatttctgtttttgtccctctc-ttacctccagtt 310  Q
    ||||||||||||||||||||| ||| ||| ||||||||||||| | | |||| || ||| |||| |||||| ||||||||||   || || |||||| ||    
T  13994222 ttttggtattttagacaacttgtacatgagacaaaaagttgtgttgtggtttggtgagggacaaaaatttcagtttttgtccagttccttgcctccaatt 13994123  T
Q  311 tgtcatgtccatgaaacagtcttataaagaaaacattatacaactgaaattgt 363  Q
    |||||||||||||||||||| ||| |||  ||||| |  ||||||||| ||||    
T  13994122 tgtcatgtccatgaaacagttttacaaatcaaacactggacaactgaagttgt 13994070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 213 - 330
Target Start/End: Complemental strand, 35387458 - 35387339
Alignment:
Q  213 ttttggtattttagacaactt-tacttgaaacaaaaagttgtgctctagttttgtaaggaacaagaatttctgtttttgtccc-tctcttacctccagtt 310  Q
    ||||||||||||||||||||| ||| || |||||||||||||||| | |||| || ||| |||| ||| |  ||||||||||  || |||||||||||||    
T  35387458 ttttggtattttagacaacttgtacgtggaacaaaaagttgtgctgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttacctccagtt 35387359  T
Q  311 tgtcatgtccatgaaacagt 330  Q
    |||| ||| | |||||||||    
T  35387358 tgtcctgtacctgaaacagt 35387339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 347
Target Start/End: Original strand, 16704753 - 16704889
Alignment:
Q  213 ttttggtattttagacaactt-tacttgaaacaaaaagttgtgctctagttttgtaaggaacaagaatttctgtttttgtccc-tctcttacctccagtt 310  Q
    ||||||||||||||||||||| ||  ||| ||||| ||||||| | | |||| |||||| |||| ||| | ||||||||||   || ||| |||||||||    
T  16704753 ttttggtattttagacaacttgtatgtgagacaaagagttgtgatgtggtttggtaagggacaaaaatatatgtttttgtcgtgtcccttgcctccagtt 16704852  T
Q  311 tgtcatgtccatgaaacagtcttataaagaaaacatt 347  Q
    |||||||| | ||||||||| ||| |||  |||||||    
T  16704853 tgtcatgtacctgaaacagttttacaaatcaaacatt 16704889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 213 - 330
Target Start/End: Complemental strand, 41967996 - 41967877
Alignment:
Q  213 ttttggtattttagacaactt-tacttgaaacaaaaagttgtgctctagttttgtaaggaacaagaatttctgtttttgtc-cctctcttacctccagtt 310  Q
    ||||||||||||||||||||| ||| ||| ||||||||||||| | | |||| |||||| |||| ||| |  |||||||||   |||||| |||| ||||    
T  41967996 ttttggtattttagacaacttgtacgtgagacaaaaagttgtgttgtggtttggtaagggacaaaaatatgagtttttgtcttgtctcttgcctctagtt 41967897  T
Q  311 tgtcatgtccatgaaacagt 330  Q
    |||| ||| | |||||||||    
T  41967896 tgtcctgtacctgaaacagt 41967877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 292
Target Start/End: Original strand, 26733582 - 26733662
Alignment:
Q  213 ttttggtattttagacaactt-tacttgaaacaaaaagttgtgctctagttttgtaaggaacaagaatttctgtttttgtc 292  Q
    ||||||||||||||||||||| ||| |||  |||||||||||| | | |||| ||  || ||||||||||| |||||||||    
T  26733582 ttttggtattttagacaacttgtacatgaggcaaaaagttgtgttatggtttagtgggggacaagaatttcagtttttgtc 26733662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 256
Target Start/End: Complemental strand, 28340450 - 28340406
Alignment:
Q  213 ttttggtattttagacaactt-tacttgaaacaaaaagttgtgct 256  Q
    ||||||||||||||||||||| ||| ||| |||||||||||||||    
T  28340450 ttttggtattttagacaacttgtacgtgagacaaaaagttgtgct 28340406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 213 - 327
Target Start/End: Complemental strand, 41366182 - 41366066
Alignment:
Q  213 ttttggtattttagacaactt-tacttgaaacaaaaagttgtgctctagttttgtaaggaacaagaatttctgtttttgtccc-tctcttacctccagtt 310  Q
    ||||||||||||||||||||| ||  ||| ||||||| ||||| | | |||| || ||| |||| |||||| ||||||||||  |||||| |||||||||    
T  41366182 ttttggtattttagacaacttgtatgtgagacaaaaaattgtgttgtggtttggtgagggacaaaaatttcagtttttgtcctatctcttgcctccagtt 41366083  T
Q  311 tgtcatgtccatgaaac 327  Q
    |||||||||| ||||||    
T  41366082 tgtcatgtccctgaaac 41366066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 213 - 330
Target Start/End: Original strand, 7258915 - 7259034
Alignment:
Q  213 ttttggtattttagacaactt-tacttgaaacaaaaagttgtgctctagttttgtaaggaacaagaatttctgtttttgtcc-ctctcttacctccagtt 310  Q
    ||||||||||||||||||||| ||| ||| ||||||||||||||| | |||| || ||| |||| ||| |  ||||||||||  || ||| |||||||||    
T  7258915 ttttggtattttagacaacttgtacgtgagacaaaaagttgtgctgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctccagtt 7259014  T
Q  311 tgtcatgtccatgaaacagt 330  Q
    |||| ||| | |||||||||    
T  7259015 tgtcctgtacctgaaacagt 7259034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 213 - 330
Target Start/End: Complemental strand, 7761645 - 7761526
Alignment:
Q  213 ttttggtattttagacaactt-tacttgaaacaaaaagttgtgctctagttttgtaaggaacaagaatttctgtttttgtcc-ctctcttacctccagtt 310  Q
    ||||||||||||||||||||| ||| ||| ||||||||||||||| | |||| || ||| |||| ||| |  ||||||||||  || ||| |||| ||||    
T  7761645 ttttggtattttagacaacttgtacgtgagacaaaaagttgtgctgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctctagtt 7761546  T
Q  311 tgtcatgtccatgaaacagt 330  Q
    |||||||| | |||||||||    
T  7761545 tgtcatgtacctgaaacagt 7761526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 212 - 363
Target Start/End: Original strand, 17540732 - 17540885
Alignment:
Q  212 tttttggtattttagacaactt-tacttgaaacaaaaagttgtgctctagttttgtaaggaacaagaatttctgtttttgtcc-ctctcttacctccagt 309  Q
    |||||||||||||||||||||| ||| ||  ||||||||||||||| | |||| || ||| |||| ||| |  ||||||||||  || ||| ||||||||    
T  17540732 tttttggtattttagacaacttgtacgtgggacaaaaagttgtgctgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctccagt 17540831  T
Q  310 ttgtcatgtccatgaaacagtcttataaagaaaacattatacaactgaaattgt 363  Q
    ||||| ||| | ||||||||| ||| |||  ||||| |  |||||| |||||||    
T  17540832 ttgtcctgtacttgaaacagttttacaaatcaaacactggacaactaaaattgt 17540885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 363
Target Start/End: Original strand, 6896186 - 6896338
Alignment:
Q  213 ttttggtattttagacaactt-tacttgaaacaaaaagttgtgctctagttttgtaaggaacaagaatttctgtttttgtcc-ctctcttacctccagtt 310  Q
    ||||||| ||||||||||||| ||| ||  ||||||||||||||| | |||| || ||| |||| |||||| |||||| |||  || ||| |||||||||    
T  6896186 ttttggtgttttagacaacttgtacgtgggacaaaaagttgtgctgttgtttggtgagggacaaaaatttcagtttttatcctgtcccttgcctccagtt 6896285  T
Q  311 tgtcatgtccatgaaacagtcttataaagaaaacattatacaactgaaattgt 363  Q
    |||  ||||| ||||||||| ||| |||  ||||| |  ||||||||| ||||    
T  6896286 tgttttgtccctgaaacagttttacaaatcaaacactggacaactgaagttgt 6896338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 213 - 330
Target Start/End: Complemental strand, 5278906 - 5278787
Alignment:
Q  213 ttttggtattttagacaactt-tacttgaaacaaaaagttgtgctctagttttgtaaggaacaagaatttctgtttttgtccc-tctcttacctccagtt 310  Q
    ||||||||||||||||||||| ||| ||  ||||||| ||||||| | |||| || ||| |||| ||| |  ||||||||||  || ||| |||||||||    
T  5278906 ttttggtattttagacaacttgtacgtgggacaaaaaattgtgctgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctccagtt 5278807  T
Q  311 tgtcatgtccatgaaacagt 330  Q
    |||||||| | |||||||||    
T  5278806 tgtcatgtacctgaaacagt 5278787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 292
Target Start/End: Original strand, 26418941 - 26419021
Alignment:
Q  213 ttttggtattttagacaactt-tacttgaaacaaaaagttgtgctctagttttgtaaggaacaagaatttctgtttttgtc 292  Q
    ||||||||||||||||||||| ||| ||  ||||||||||||||| | |||| || |||||||| ||| |  |||||||||    
T  26418941 ttttggtattttagacaacttgtacgtgggacaaaaagttgtgctgtggtttggtgaggaacaaaaatatgagtttttgtc 26419021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 256
Target Start/End: Complemental strand, 30326403 - 30326359
Alignment:
Q  213 ttttggtattttagacaactt-tacttgaaacaaaaagttgtgct 256  Q
    ||||||||||||||||||||| ||| ||| |||||||||||||||    
T  30326403 ttttggtattttagacaacttgtacgtgagacaaaaagttgtgct 30326359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 213 - 338
Target Start/End: Original strand, 6386594 - 6386721
Alignment:
Q  213 ttttggtattttagacaactt-tacttgaaacaaaaagttgtgctctagttttgtaaggaacaagaatttctgtttttgtcc-ctctcttacctccagtt 310  Q
    ||||||||||||||||||||| ||| ||| ||||||||||||| | | |||| || ||| |||| ||| |  ||||||||||  ||| ||||||||||||    
T  6386594 ttttggtattttagacaacttgtacgtgagacaaaaagttgtgttgtggtttggtgagggacaaaaatatgagtttttgtcctatcttttacctccagtt 6386693  T
Q  311 tgtcatgtccatgaaacagtcttataaa 338  Q
    |||| | | | ||||||||| |||||||    
T  6386694 tgtcctatacctgaaacagttttataaa 6386721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 363
Target Start/End: Original strand, 15001484 - 15001636
Alignment:
Q  213 ttttggtattttagacaactt-tacttgaaacaaaaagttgtgctctagttttgtaaggaacaagaatttctgtttttgtccc-tctcttacctccagtt 310  Q
    ||||||||||||||| ||||| ||| ||  ||||||||||||| | | |||| || ||| |||| |||||| |||||||| |  ||| || |||||||||    
T  15001484 ttttggtattttagataacttgtacgtgggacaaaaagttgtgttgtggtttggtgagggacaaaaatttcagtttttgttctgtctattgcctccagtt 15001583  T
Q  311 tgtcatgtccatgaaacagtcttataaagaaaacattatacaactgaaattgt 363  Q
    |||| ||||| ||||||||| ||| |||  ||||| |  ||||||||| ||||    
T  15001584 tgtcctgtccctgaaacagttttacaaatcaaacactggacaactgaagttgt 15001636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 363
Target Start/End: Complemental strand, 29611142 - 29610990
Alignment:
Q  213 ttttggtattttagacaacttt-acttgaaacaaaaagttgtgctctagttttgtaaggaacaagaatttctgtttttgtccc-tctcttacctccagtt 310  Q
    ||||||| |||||||||||||| || ||  ||||||||||||| | | |||| |  ||| |||| |||||| ||||||||||  || ||| |||||||||    
T  29611142 ttttggtgttttagacaacttttacgtgggacaaaaagttgtgttgtggtttggcgagggacaaaaatttcagtttttgtcctgtcccttgcctccagtt 29611043  T
Q  311 tgtcatgtccatgaaacagtcttataaagaaaacattatacaactgaaattgt 363  Q
    |||  ||||| ||||||||| ||| |||  |||||||  ||||||||| ||||    
T  29611042 tgttctgtccctgaaacagttttacaaatcaaacattggacaactgaagttgt 29610990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 213 - 330
Target Start/End: Complemental strand, 8673142 - 8673023
Alignment:
Q  213 ttttggtattttagacaactt-tacttgaaacaaaaagttgtgctctagttttgtaaggaacaagaatttctgtttttgtccc-tctcttacctccagtt 310  Q
    ||||||||||||||||||||| ||| ||  ||||||||||||| | | |||| || ||| |||| ||| |  ||||||||||  || ||| |||||||||    
T  8673142 ttttggtattttagacaacttgtacgtgggacaaaaagttgtgttgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctccagtt 8673043  T
Q  311 tgtcatgtccatgaaacagt 330  Q
    |||||||| | |||||||||    
T  8673042 tgtcatgtacctgaaacagt 8673023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 213 - 330
Target Start/End: Original strand, 45446473 - 45446592
Alignment:
Q  213 ttttggtattttagacaactt-tacttgaaacaaaaagttgtgctctagttttgtaaggaacaagaatttctgtttttgtcc-ctctcttacctccagtt 310  Q
    ||||||||||||||||||||| ||| ||  ||||||||||||||| | |||| || |||||||| ||| |  |||||| |||  || ||| |||||||||    
T  45446473 ttttggtattttagacaacttgtacgtgggacaaaaagttgtgctgtggtttggtgaggaacaaaaatatgagtttttatcctgtcccttgcctccagtt 45446572  T
Q  311 tgtcatgtccatgaaacagt 330  Q
    |||| ||| | |||||||||    
T  45446573 tgtcgtgtacctgaaacagt 45446592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 363
Target Start/End: Complemental strand, 7591534 - 7591382
Alignment:
Q  213 ttttggtattttagacaactt-tacttgaaacaaaaagttgtgctctagttttgtaaggaacaagaatttctgtttttgtccc-tctcttacctccagtt 310  Q
    ||||| ||||||||||||||| ||| ||  ||||||||||||| | | ||||  | ||| |||| ||| || ||||||||||  |||||| |||||||||    
T  7591534 ttttgatattttagacaacttatacgtgtgacaaaaagttgtgttgtggtttgctgaggcacaaaaatatcagtttttgtcctgtctcttgcctccagtt 7591435  T
Q  311 tgtcatgtccatgaaacagtcttataaagaaaacattatacaactgaaattgt 363  Q
    |||| ||| | ||||||||| ||| |||  ||||| |  ||||||||| ||||    
T  7591434 tgtcctgtacctgaaacagttttacaaatcaaacactggacaactgaagttgt 7591382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 292
Target Start/End: Original strand, 17805709 - 17805789
Alignment:
Q  213 ttttggtattttagacaactt-tacttgaaacaaaaagttgtgctctagttttgtaaggaacaagaatttctgtttttgtc 292  Q
    ||||||||||||||||||||| ||| ||| ||||| ||||||||| | |||| || |||||||| ||| |  |||||||||    
T  17805709 ttttggtattttagacaacttgtacgtgagacaaagagttgtgctttggtttggtgaggaacaaaaatatgagtttttgtc 17805789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 256
Target Start/End: Complemental strand, 32020088 - 32020044
Alignment:
Q  213 ttttggtattttagacaactt-tacttgaaacaaaaagttgtgct 256  Q
    ||||||||||||||||||||| ||| || ||||||||||||||||    
T  32020088 ttttggtattttagacaacttgtacgtggaacaaaaagttgtgct 32020044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 327
Target Start/End: Original strand, 35225680 - 35225796
Alignment:
Q  213 ttttggtattttagacaactt-tacttgaaacaaaaagttgtgctctagttttgtaaggaacaagaatttctgtttttgtccc-tctcttacctccagtt 310  Q
    |||| |||||||||||||||| ||||||  ||||||||||||| | | |||| |  ||| |||| |||| | ||||||||||  || ||| |||||||||    
T  35225680 tttttgtattttagacaacttgtacttgtgacaaaaagttgtgatgtggtttggcgagggacaaaaattgcagtttttgtcctgtcccttgcctccagtt 35225779  T
Q  311 tgtcatgtccatgaaac 327  Q
    |||| ||||| ||||||    
T  35225780 tgtcctgtccctgaaac 35225796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 213 - 330
Target Start/End: Original strand, 21784893 - 21785012
Alignment:
Q  213 ttttggtattttagacaactt-tacttgaaacaaaaagttgtgctctagttttgtaaggaacaagaatttctgtttttgtccc-tctcttacctccagtt 310  Q
    ||||||||||||||||||||| ||| ||  ||||||||||||| | | |||| || ||| |||| ||| |  ||||||||||  |||||| |||||||||    
T  21784893 ttttggtattttagacaacttgtacgtgggacaaaaagttgtgttgtggtttggtgagggacaaaaatatgagtttttgtcctgtctcttgcctccagtt 21784992  T
Q  311 tgtcatgtccatgaaacagt 330  Q
    |||||||| | |||||||||    
T  21784993 tgtcatgtgcctgaaacagt 21785012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 292
Target Start/End: Original strand, 48699420 - 48699500
Alignment:
Q  213 ttttggtattttagacaactt-tacttgaaacaaaaagttgtgctctagttttgtaaggaacaagaatttctgtttttgtc 292  Q
    ||||||||||||||||||||| ||| || |||||| ||||||| | | |||| || ||| ||||||||||| |||||||||    
T  48699420 ttttggtattttagacaacttgtacgtggaacaaatagttgtgttgtggtttagtgagggacaagaatttcagtttttgtc 48699500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 213 - 330
Target Start/End: Complemental strand, 10932630 - 10932511
Alignment:
Q  213 ttttggtattttagacaactt-tacttgaaacaaaaagttgtgctctagttttgtaaggaacaagaatttctgtttttgtcc-ctctcttacctccagtt 310  Q
    ||||||||||||||||||||| ||| ||  ||||||||||||| | |||||| || ||| |||| ||| |  ||||||||||  || ||| |||||||||    
T  10932630 ttttggtattttagacaacttgtacgtgggacaaaaagttgtgttgtagtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctccagtt 10932531  T
Q  311 tgtcatgtccatgaaacagt 330  Q
    |||| ||| | |||||||||    
T  10932530 tgtcctgtacctgaaacagt 10932511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 213 - 330
Target Start/End: Complemental strand, 26994298 - 26994179
Alignment:
Q  213 ttttggtattttagacaactt-tacttgaaacaaaaagttgtgctctagttttgtaaggaacaagaatttctgtttttgtccc-tctcttacctccagtt 310  Q
    ||||||||||||||||||||| ||| ||  ||||||||||||||| | |||| || ||| |||| ||| |  | ||||||||  || ||| |||||||||    
T  26994298 ttttggtattttagacaacttgtacgtgggacaaaaagttgtgctgtggtttggtgagggacaaaaatatgagattttgtcctgtcccttgcctccagtt 26994199  T
Q  311 tgtcatgtccatgaaacagt 330  Q
    |||||||| | |||||||||    
T  26994198 tgtcatgtacctgaaacagt 26994179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 345
Target Start/End: Complemental strand, 3922776 - 3922642
Alignment:
Q  213 ttttggtattttagacaactt-tacttgaaacaaaaagttgtgctctagttttgtaaggaacaagaatttctgtttttgtccc-tctcttacctccagtt 310  Q
    ||||||||||||||| ||||| ||| ||  ||||||||||||||| | |||| || |||||||| ||| |  |||||||||   || ||| |||||||||    
T  3922776 ttttggtattttagataacttgtacgtgggacaaaaagttgtgctgtggtttggtgaggaacaaaaatatgagtttttgtcttgtcccttgcctccagtt 3922677  T
Q  311 tgtcatgtccatgaaacagtcttataaagaaaaca 345  Q
    |||| ||| | ||||||||| ||| ||| ||||||    
T  3922676 tgtcctgtacctgaaacagttttacaaataaaaca 3922642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 347
Target Start/End: Original strand, 40753177 - 40753313
Alignment:
Q  213 ttttggtattttagacaactt-tacttgaaacaaaaagttgtgctctagttttgtaaggaacaagaatttctgtttttgtcc-ctctcttacctccagtt 310  Q
    ||||||||||||||||||||| ||| ||  ||||||||||||||| |  ||| || ||| |||| ||| |  ||||||||||  || ||| |||||||||    
T  40753177 ttttggtattttagacaacttgtacgtgggacaaaaagttgtgctgtgatttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctccagtt 40753276  T
Q  311 tgtcatgtccatgaaacagtcttataaagaaaacatt 347  Q
    |||| ||| | ||||||||| ||| |||  |||||||    
T  40753277 tgtcctgtacctgaaacagttttacaaatcaaacatt 40753313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 292
Target Start/End: Complemental strand, 8561060 - 8560980
Alignment:
Q  213 ttttggtattttagacaactt-tacttgaaacaaaaagttgtgctctagttttgtaaggaacaagaatttctgtttttgtc 292  Q
    ||||||||||||||||||||| ||| || |||||||||||||| | | |||| || |||||||| ||| || |||||||||    
T  8561060 ttttggtattttagacaacttgtacctggaacaaaaagttgtgatgtggtttggtgaggaacaaaaatatcagtttttgtc 8560980  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 213 - 330
Target Start/End: Complemental strand, 21739239 - 21739120
Alignment:
Q  213 ttttggtattttagacaactt-tacttgaaacaaaaagttgtgctctagttttgtaaggaacaagaatttctgtttttgtcc-ctctcttacctccagtt 310  Q
    ||||||||||||||||||||| ||| ||  ||||||||||||||| | |||| || ||| |||| ||| |  ||||||||||  || ||| |||||||||    
T  21739239 ttttggtattttagacaacttgtacgtgggacaaaaagttgtgctgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctccagtt 21739140  T
Q  311 tgtcatgtccatgaaacagt 330  Q
    |||| ||| | |||||||||    
T  21739139 tgtcctgtacctgaaacagt 21739120  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 213 - 314
Target Start/End: Original strand, 39918525 - 39918628
Alignment:
Q  213 ttttggtattttagacaactt-tacttgaaacaaaaagttgtgctctagttttgtaaggaacaagaatttctgtttttgtcc-ctctcttacctccagtt 310  Q
    ||||||||||||||||||||| ||| ||| ||||||||||||||| | |||| || ||| |||| ||| |  ||||||||||  || ||| |||||||||    
T  39918525 ttttggtattttagacaacttgtacgtgagacaaaaagttgtgctgtggtttggtgagggacaaaaatatgagtttttgtcctgtcccttgcctccagtt 39918624  T
Q  311 tgtc 314  Q
    ||||    
T  39918625 tgtc 39918628  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 330
Target Start/End: Original strand, 31644464 - 31644582
Alignment:
Q  213 ttttggtattttagacaactt-tacttgaaacaaaaagttgtgctctagttttgtaaggaacaagaatttctgtttttgtccctctcttacctccagttt 311  Q
    ||||||||||||||||||||| ||| ||  ||||||||||||||| | |||| || ||| |||| ||| |  || ||||||   ||||| ||||||||||    
T  31644464 ttttggtattttagacaacttgtacgtgggacaaaaagttgtgctgtggtttggtgagggacaaaaatatgagtatttgtcttgctcttgcctccagttt 31644563  T
Q  312 gtcatgtccatgaaacagt 330  Q
    ||| ||| | |||||||||    
T  31644564 gtcctgtacctgaaacagt 31644582  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 256
Target Start/End: Complemental strand, 7208308 - 7208264
Alignment:
Q  213 ttttggtattttagacaactt-tacttgaaacaaaaagttgtgct 256  Q
    ||||||||||||||||||||| ||| ||| |||||||||||||||    
T  7208308 ttttggtattttagacaacttgtacgtgagacaaaaagttgtgct 7208264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 292
Target Start/End: Complemental strand, 18470506 - 18470426
Alignment:
Q  213 ttttggtattttagacaactt-tacttgaaacaaaaagttgtgctctagttttgtaaggaacaagaatttctgtttttgtc 292  Q
    ||||||| ||||||||||||| ||| ||  | ||||||||||||| | |||| |||||| |||| |||||| |||||||||    
T  18470506 ttttggtgttttagacaacttgtacgtgggataaaaagttgtgctgtggtttggtaagggacaaaaatttcagtttttgtc 18470426  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 311
Target Start/End: Complemental strand, 22432387 - 22432287
Alignment:
Q  213 ttttggtattttagacaactt-tacttgaaacaaaaagttgtgctctagttttgtaaggaacaagaatttctgtttttgtcc-ctctcttacctccagtt 310  Q
    ||||||||||||||||||||| ||||||| ||||||| ||||| | | ||||  | ||| |||| ||| || ||||||||||  |||||| |||||||||    
T  22432387 ttttggtattttagacaacttgtacttgagacaaaaaattgtgttgtggtttgatgagggacaaaaatatcagtttttgtcctgtctcttgcctccagtt 22432288  T
Q  311 t 311  Q
    |    
T  22432287 t 22432287  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 213 - 314
Target Start/End: Original strand, 24203380 - 24203483
Alignment:
Q  213 ttttggtattttagacaactt-tacttgaaacaaaaagttgtgctctagttttgtaaggaacaagaatttctgtttttgtcc-ctctcttacctccagtt 310  Q
    ||||||||||||||||||||| ||| ||  ||||||||||||||| | |||| || ||| |||| ||| |  ||||||||||  |||||| |||||||||    
T  24203380 ttttggtattttagacaacttgtacgtgggacaaaaagttgtgctgtggtttggtgagggacaaaaatatgagtttttgtcctgtctcttgcctccagtt 24203479  T
Q  311 tgtc 314  Q
    ||||    
T  24203480 tgtc 24203483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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