View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1944_low_23 (Length: 376)
Name: NF1944_low_23
Description: NF1944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1944_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 29337130 - 29336772
Alignment:
| Q |
1 |
tgtctccaatttccaaagcagtttatagttgatctcagaagcaagcaaccatcagtttgaacttgaa-cttaagagagggtatgtaacactctttatttt |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
29337130 |
tgtctccaatttccaaagcagtttatagttgatctcagaagcaagcaaccatcagtttgaacttgaaacttaagagagggtatgtaacactctttatttt |
29337031 |
T |
|
| Q |
100 |
caacctgttctaaacttctgattgtgttctttcttggtttctaggtaatttagaacttataatcactagattttcatcatctcattcatgctctagtttt |
199 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29337030 |
caacctgttctaaacttctgactgtgttctttcttggtttctaggtaac--actctttataatcactagattttcatcatctcattcatgctctagtttt |
29336933 |
T |
|
| Q |
200 |
gcaccaccaccaaactatattttgctctctaaaccaacacatgtgagatttcctttccacctagaatttgcaatgaagaaactgaacatgtatgtgcatg |
299 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29336932 |
gcacccgcaccaaactatattttgctctctaaaccaacacatgtgagatttcctttccacctagaatttgcaatgaagaaactgaacatgtatgtgcatg |
29336833 |
T |
|
| Q |
300 |
caatattcnnnnnnnnnagtcttaaccttctcgttctcagaggaacgagtcctgataatcc |
360 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29336832 |
caatattctttttttttagtcttaaccttctcgttctcagaggaacgagtcctgataatcc |
29336772 |
T |
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