View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1944_low_28 (Length: 325)
Name: NF1944_low_28
Description: NF1944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1944_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 49769697 - 49769950
Alignment:
| Q |
1 |
tcatcattttgtatgttatgtaacgtgctagctacatcaccattttatagtctacgattttgaacgagggactgaaattgatggattttaaaataggggg |
100 |
Q |
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| T |
49769697 |
tcatcattttgtatgttacgtaacgtgctagctacatcaccattttatagtctacgattttgaacgagggattgaaattgatggattttaaaataggggg |
49769796 |
T |
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| Q |
101 |
atcagttatataaatgagtggaattaaaaggatcaaaattgtatcaatttaaaacaatgtgagcaatctatattgttaaag--nnnnnnnngtacacaat |
198 |
Q |
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| T |
49769797 |
atcaattatgtaaatgagtggaattaaagggaccaaaattgtatcgatttaaaacaatgtgagcaatctatattgttaaagttttttttttgtacacaat |
49769896 |
T |
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| Q |
199 |
agatgagaaaaaagattgatagtcttaatctaacaactaaaaacttgaggaatt |
252 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
49769897 |
agatgagaaaaaagattgatagtcttaatcaaacaactaaaaacttgaggaatt |
49769950 |
T |
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