View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1944_low_29 (Length: 317)
Name: NF1944_low_29
Description: NF1944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1944_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 45 - 313
Target Start/End: Complemental strand, 33975004 - 33974738
Alignment:
| Q |
45 |
attaaatattatgacacgttgatgttatgttattgttcactaatcaagaatctctgaagttttctcactnnnnnnnntaaagatattttgacaattgaaa |
144 |
Q |
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| T |
33975004 |
attaaatattatgacacgttgatgttatgttattgttcactaatcaagaatctctgaagttttcttactaaaaaaa-taaaaatattttgaccattgaaa |
33974906 |
T |
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| Q |
145 |
gataaaaagaggagggtttttaatttgataaaatgttgagccgttagttaaagtaggggtgaagaatcttcggtgaagatttaaaacctaagaaaatata |
244 |
Q |
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| T |
33974905 |
gataaaaagaggagtgtttttaatttgataaaatgttgagccgttagttaaa-taggggcgaagaatcttcagtgaagatttaaaacctaagaaaatata |
33974807 |
T |
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| Q |
245 |
caggccatccttttccaatgaacacattggcatttggtgcattgtatgccctacaaatataaagaaaag |
313 |
Q |
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| T |
33974806 |
aaggccatccttttccaatgaacacattggcatttggtgcattgtatgccctacaagtataaagaaaag |
33974738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 10 - 45
Target Start/End: Complemental strand, 33979261 - 33979226
Alignment:
| Q |
10 |
ttattcttcaatttgttttggttttaaatatccgta |
45 |
Q |
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| T |
33979261 |
ttattcttcaatttgttttggttttaaatatccgta |
33979226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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