View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1944_low_30 (Length: 309)
Name: NF1944_low_30
Description: NF1944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1944_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 7e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 11 - 295
Target Start/End: Complemental strand, 5703979 - 5703695
Alignment:
| Q |
11 |
cacagatcattgtttagattaaattaagataagaatctttatttacaaaagcatatattaagtaaataattattttccttaaaaacttacatttagtttg |
110 |
Q |
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| T |
5703979 |
cacagatcattgtttagattaaattaagataagaatctttatttacaaaagcatatattaagtaaataattattttccttaaaaacttacatttagtttg |
5703880 |
T |
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| Q |
111 |
aaccacgnnnnnnnagaggattttctaaccatgttattcatgcaannnnnnngaaggaattcatgcaaaatatttatcgacctggccggaaggatannnn |
210 |
Q |
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| T |
5703879 |
aaccacgtttttttagaggattttctaaccatgtttttttt-----ttttttgagggaattcatgcaaaatatttatcgaccaggccggaaggataattt |
5703785 |
T |
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| Q |
211 |
nnnatttattaataggggtataatcatatactttaaatatttct-----gtgttttcatataatcaaacaacacagtcttctaacctaaa |
295 |
Q |
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| T |
5703784 |
tttatttattaataggggtataatcatatactttaaatatttctcttaagtgttttcatataatcaaacaacatagtcttctaacctaaa |
5703695 |
T |
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