View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1944_low_31 (Length: 301)
Name: NF1944_low_31
Description: NF1944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1944_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 13 - 283
Target Start/End: Original strand, 52000780 - 52001050
Alignment:
| Q |
13 |
aatatttaatctcccaatacgaatggctacttcctccataccaatattacctcctttgtatacaccatctctgttaagcctatcacaccgatgatcacac |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
52000780 |
aatatttaatctcccaatacgaatggctacttcctccataccaatattacctcctttgtatacaccatctctgttaagcctatcacactgatgatcacac |
52000879 |
T |
|
| Q |
113 |
gagggcaaccatatatagaaactcgtctactctcctaacatcctcggctgcaacaatacaaccaggattcatgtcgcaattctgcactctccttcaaacc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52000880 |
gagggcaaccatatatagaaactcgtctactctcctaacatcctcggctgcaacaatacaaccaggattcatgtcgcaattctgcactctccttcaaacc |
52000979 |
T |
|
| Q |
213 |
cccatccatagctgactcgacatcacgaagtctccatcatgcatcgccaagtccagggtgcatgacatgcc |
283 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52000980 |
cccatccatagctgactcgacatcacgaagtctccatcatgcatcgccaagtccagggtgcatgacatgcc |
52001050 |
T |
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