View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1944_low_4 (Length: 606)
Name: NF1944_low_4
Description: NF1944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1944_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-144; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 265 - 598
Target Start/End: Complemental strand, 10774049 - 10773714
Alignment:
| Q |
265 |
agcagtttgggtagcttaatcatatattttgatagaaagctgctggaaattaaagagatcaatagtgatacgaagtgattaagaagacat--gatttgat |
362 |
Q |
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| T |
10774049 |
agcagtttgggtagcttaatcatatattttgatagaaagctgctggaaattaaagagatcaatagtgatacgaagtgattaagaagacatatgatttgat |
10773950 |
T |
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| Q |
363 |
catgcaattcggtcaattgtgtaaatgtctttcatagtagagcggattttgtaaacacatttggtcattcattcgagttataaattataacttgagttta |
462 |
Q |
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| T |
10773949 |
catgcaattcggtcaattgtgtaaatgtctttcatagtagagcggattttgtaaatacatttcgtcatttattcgagttataaattataacctaagttta |
10773850 |
T |
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| Q |
463 |
gaaattgtttaatttcatctaatnnnnnnntgagtgttagagagattgttcaaaagaaagtgttgctgacatttctcaaagaaatttgtgatgacctagt |
562 |
Q |
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| T |
10773849 |
gaaattgtttaatttcatccaataaaaaaataagtgttggagagattgttcaaaagaaagtgttgctgatatttctcaaagaaatttgtgatgacctaat |
10773750 |
T |
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| Q |
563 |
gatcagataacactctatacttgtacaccctatgct |
598 |
Q |
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| T |
10773749 |
gatcaaataacactctatacttgtacaccctatgct |
10773714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 37 - 233
Target Start/End: Complemental strand, 10774245 - 10774050
Alignment:
| Q |
37 |
ttagtgtcggttggtttatggagacaaagcaagaaaaacatttcagtggctactagcagttaaaagattgagtcaatgtgaaatcagagcagatctgtgg |
136 |
Q |
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| T |
10774245 |
ttagtgtcggttggtttatgaagacaaagcaagaaaaacatttcagtggctactagcagttaaaagattgagtcaatgtgaaatcagagcagatctgtgg |
10774146 |
T |
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| Q |
137 |
attttgttgcaatgctttctctgcaatgtttttggctttcttttctgtgtttcagtgtattannnnnnnggcattgtatgtgtgtgtggtttttgac |
233 |
Q |
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| T |
10774145 |
attttgttgcaatgctttctctgcaatgtttttggctttcttttctgtgtttcagtgtattatttttttggca-tgtatgtgtgtgtggtttttgac |
10774050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 493 - 541
Target Start/End: Complemental strand, 15508957 - 15508909
Alignment:
| Q |
493 |
tgagtgttagagagattgttcaaaagaaagtgttgctgacatttctcaa |
541 |
Q |
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| T |
15508957 |
tgagtgttagaaagagtgttcaaaagagagtgttgctaacattcctcaa |
15508909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 493 - 529
Target Start/End: Complemental strand, 13407364 - 13407328
Alignment:
| Q |
493 |
tgagtgttagagagattgttcaaaagaaagtgttgct |
529 |
Q |
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| T |
13407364 |
tgagtgttagagagagtgttcaaaagagagtgttgct |
13407328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 499 - 535
Target Start/End: Complemental strand, 38537548 - 38537512
Alignment:
| Q |
499 |
ttagagagattgttcaaaagaaagtgttgctgacatt |
535 |
Q |
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| T |
38537548 |
ttagagagagtgttcaaaagaaagtgttgctaacatt |
38537512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 495 - 539
Target Start/End: Original strand, 39016805 - 39016849
Alignment:
| Q |
495 |
agtgttagagagattgttcaaaagaaagtgttgctgacatttctc |
539 |
Q |
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| T |
39016805 |
agtgctagagagagtgttcaaaagagagtgttgctaacatttctc |
39016849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 493 - 529
Target Start/End: Complemental strand, 27243088 - 27243052
Alignment:
| Q |
493 |
tgagtgttagagagattgttcaaaagaaagtgttgct |
529 |
Q |
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| T |
27243088 |
tgagtgttagagagagtgttcaaaagagagtgttgct |
27243052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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