View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1944_low_40 (Length: 260)
Name: NF1944_low_40
Description: NF1944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1944_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 136 - 244
Target Start/End: Original strand, 21623778 - 21623886
Alignment:
| Q |
136 |
ggtacaatcaggggaccatattaattaaagtagaaaacaaacacacacgtctgtgttatgaattatgtgtatcaattcttccctcgtgtacaatttgtaa |
235 |
Q |
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| T |
21623778 |
ggtacaatcaggggaccatattaattaaagtagaaaacaaacacacacgtctgtgttatgaattatgtgtatcaattcttccctcgtgtacaatttgtaa |
21623877 |
T |
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| Q |
236 |
ggagtcatc |
244 |
Q |
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||||||||| |
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| T |
21623878 |
ggagtcatc |
21623886 |
T |
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Target: chr4; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 21623650 - 21623741
Alignment:
| Q |
8 |
catcatcaacatctaatcatattaaggttcctattcaaatacttaatttggtgagaccaaaccacacaatcatctttacataggaccacggg |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21623650 |
catcatcaacatctaatcatattaaggttcctattcaaatacttaatttggtgagaccaaaccacacaatcatctttacataggaccacggg |
21623741 |
T |
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