View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1944_low_41 (Length: 260)
Name: NF1944_low_41
Description: NF1944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1944_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 113; Significance: 3e-57; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 18359843 - 18359975
Alignment:
| Q |
1 |
ttacttttgattcatttggggattggttttaatagttttttgaggattaaaatctatacaatacttatttgtgatctagtcgctag-aaattcagtcaca |
99 |
Q |
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| T |
18359843 |
ttacttttgattcatttggtgattggttttaatagttttttgaggattaaaatctatacaatacttatttgtgatctagtcgctagaaaattcaatcaca |
18359942 |
T |
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| Q |
100 |
ccatataacagtgctctttattttaataaatac |
132 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
18359943 |
ccatataagagtgctctttattttaataaatac |
18359975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 130 - 250
Target Start/End: Original strand, 18360233 - 18360353
Alignment:
| Q |
130 |
tacaaggcagggattatgttactcatcctgaaatgctattttggcatttctaaactttcctcgattgacaatgttttgtttcttgtacttgctcttcgtt |
229 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18360233 |
tacaaggcaaggattatgttactcatcctgaaatgctattttggtatttctaaactttcctcgattgacaatgttttgtttcttgtacttgctcttcgtt |
18360332 |
T |
|
| Q |
230 |
ctttatgattacttgtctgtg |
250 |
Q |
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||||||||||||||||||||| |
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| T |
18360333 |
ctttatgattacttgtctgtg |
18360353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 36603085 - 36602953
Alignment:
| Q |
1 |
ttacttttgattcatttggggattggttttaatagttttttgaggattaaaatctatacaatacttatttgtgatctagtcgctag-aaattcagtcaca |
99 |
Q |
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|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
36603085 |
ttacttttgattcatttggtgattggttttaatagttttttgaggattaaaatctatacaatacttatttgtgatctagtcgctagaaaattcaatcaca |
36602986 |
T |
|
| Q |
100 |
ccatataacagtgctctttattttaataaatac |
132 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
36602985 |
ccatataagagtgctctttattttaataaatac |
36602953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 130 - 250
Target Start/End: Complemental strand, 36602695 - 36602574
Alignment:
| Q |
130 |
tacaaggcagggattatgttactcatcctgaaatgctattttggcatttctaaacttt-cctcgattgacaatgttttgtttcttgtacttgctcttcgt |
228 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
36602695 |
tacaaggcaaggattatgttactcatcctgaaatgctattttggtatttctaaacttttcctcgattgacaatgttttgtttcttgtacttgctcttcgt |
36602596 |
T |
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| Q |
229 |
tctttatgattacttgtctgtg |
250 |
Q |
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|||||||||||||||||||||| |
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| T |
36602595 |
tctttatgattacttgtctgtg |
36602574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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