View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1944_low_43 (Length: 255)
Name: NF1944_low_43
Description: NF1944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1944_low_43 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 16 - 255
Target Start/End: Original strand, 42440828 - 42441069
Alignment:
| Q |
16 |
attgatccagacagaagcataagtttctttttaaaaaataacaaaatatcaaaaccactaaacnnnnnnnnn---cattcgaaatacagaacagcacgct |
112 |
Q |
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| T |
42440828 |
attgatccagacagaagcataagtttctttttaaaaa-taacaaaatatcaaaaccacaaaacttttttttttttcattcgaaatacagaacagcacgct |
42440926 |
T |
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| Q |
113 |
gaaaagcaaataccgaatggacctcaacaagtacacaactgcagtagtctaggaatgtcatgtttttatacttcagaactaagattaatactaaggatga |
212 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42440927 |
gaaaagcaaataccaaatggacctcaacaagtacacaactgtagtagtctaggaatgtcatgtttttatacttcagaactaagattaatactaaggatga |
42441026 |
T |
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| Q |
213 |
aggactatgcttctttgagtaagtacagcaacaacaacaaaca |
255 |
Q |
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| T |
42441027 |
aggactatgcttctttgagtaaatacagcaacaacaacaaaca |
42441069 |
T |
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