View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1944_low_48 (Length: 248)
Name: NF1944_low_48
Description: NF1944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1944_low_48 |
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| [»] scaffold1004 (1 HSPs) |
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| [»] scaffold0760 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 13 - 229
Target Start/End: Complemental strand, 12217352 - 12217136
Alignment:
| Q |
13 |
cagagattaaagaattgaaggacttacagaggcagcgaagctgaatgagtaactttaccggaattctacacaaaatttctgcaacaagatcaaacggaag |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12217352 |
cagagattaaagaattgaaggacttacagaggcagcgaagctgaatgagtaactttaccggaattctacacaaaatttctgcaacaagatcaaacggaag |
12217253 |
T |
|
| Q |
113 |
cgtgggtagtggtgccgcctgaagtgaaagcaatgttggggtttccgtcaaggtaaccgtttctgtcttcgttgttgaatttggtttacggtttgtctgt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12217252 |
cgtgggtagtggtgccgcctgaagtgaaagcaatgttagggtttccgtcaaggtaaccgtttctgtcttcgttgttgaatttggtttacggtttgtctgt |
12217153 |
T |
|
| Q |
213 |
ttacaattagagccact |
229 |
Q |
| |
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||||||||||||||||| |
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| T |
12217152 |
ttacaattagagccact |
12217136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 226
Target Start/End: Original strand, 7428328 - 7428541
Alignment:
| Q |
13 |
cagagattaaagaattgaaggacttacagaggcagcgaagctgaatgagtaactttaccggaattctacacaaaatttctgcaacaagatcaaacggaag |
112 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7428328 |
cagagattaaagaattgaagcacttacagaggcagcgaagctgaatgagtaactttaccggaattctacacaaaatttctgcaacaagatcaaacggaag |
7428427 |
T |
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| Q |
113 |
cgtgggtagtggtgccgcctgaagtgaaagcaatgttggggtttccgtcaaggtaaccgtttctgtcttcgttgttgaatttggtttacggtttgtctgt |
212 |
Q |
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|||||||||||||||||| || ||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
7428428 |
cgtgggtagtggtgccgcttgtagtgaaagcaatgttagggtttccgtcaacgtaactgtttctgtcttcgttgttgaatttggtttacggtttgtctgt |
7428527 |
T |
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| Q |
213 |
ttacaattagagcc |
226 |
Q |
| |
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|||||||||||||| |
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| T |
7428528 |
ttacaattagagcc |
7428541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 7325118 - 7325169
Alignment:
| Q |
13 |
cagagattaaagaattgaaggacttacagaggcagcgaagctgaatgagtaa |
64 |
Q |
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|||| ||||||||||||||| ||||||||||||| |||||||| |||||||| |
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| T |
7325118 |
cagaaattaaagaattgaagaacttacagaggcaccgaagctgtatgagtaa |
7325169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 124
Target Start/End: Original strand, 772246 - 772357
Alignment:
| Q |
13 |
cagagattaaagaattgaaggacttacagaggcagcgaagctgaatgagtaactttaccggaattctacacaaaatttctgcaacaagatcaaacggaag |
112 |
Q |
| |
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|||| |||| || ||| |||||||| ||||||||||||||||| | |||||||||||| |||| | |||| ||| || || |||||||| || ||||| |
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| T |
772246 |
cagatattagagtattaaaggacttgcagaggcagcgaagctgcacgagtaactttacaggaagccggcacagaatctccgccacaagatcgaatggaag |
772345 |
T |
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| Q |
113 |
cgtgggtagtgg |
124 |
Q |
| |
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||||| ||||| |
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| T |
772346 |
agtgggcagtgg |
772357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 7443715 - 7443766
Alignment:
| Q |
13 |
cagagattaaagaattgaaggacttacagaggcagcgaagctgaatgagtaa |
64 |
Q |
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|||| ||||||||||||||| ||||||||||||| ||||| || |||||||| |
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| T |
7443715 |
cagaaattaaagaattgaagaacttacagaggcaccgaagttgtatgagtaa |
7443766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 124
Target Start/End: Complemental strand, 2455167 - 2455066
Alignment:
| Q |
23 |
agaattgaaggacttacagaggcagcgaagctgaatgagtaactttaccggaattctacacaaaatttctgcaacaagatcaaacggaagcgtgggtagt |
122 |
Q |
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|||||| |||||||| ||||||||||||||||| | ||||||||| || |||| | |||| |||||| || || ||||| || ||||| ||||| ||| |
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| T |
2455167 |
agaattaaaggacttgcagaggcagcgaagctgcacgagtaacttcacaggaagccggcacagaatttccgccacgagatcgaatggaagagtgggcagt |
2455068 |
T |
|
| Q |
123 |
gg |
124 |
Q |
| |
|
|| |
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| T |
2455067 |
gg |
2455066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 124
Target Start/End: Complemental strand, 33037481 - 33037365
Alignment:
| Q |
8 |
aggagcagagattaaagaattgaaggacttacagaggcagcgaagctgaatgagtaactttaccggaattctacacaaaatttctgcaacaagatcaaac |
107 |
Q |
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|||| |||| ||||| ||||||| ||||||||||| || ||||| |||||||| | |||||||||| ||| || | |||||| || || ||||||||| |
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| T |
33037481 |
aggatcagaaattaacgaattgatagacttacagagacatcgaagttgaatgaggagttttaccggaagtctgcatagaatttcagcgacgagatcaaac |
33037382 |
T |
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| Q |
108 |
ggaagcgtgggtagtgg |
124 |
Q |
| |
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||||| ||||||||||| |
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| T |
33037381 |
ggaagagtgggtagtgg |
33037365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 24418191 - 24418290
Alignment:
| Q |
13 |
cagagattaaagaattgaaggacttacagaggcagcgaagctgaatgagtaactttaccggaattctacacaaaatttctgcaacaagatcaaacggaag |
112 |
Q |
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|||||||||| |||||||||||||| ||||| |||||||| |||| ||||||||| || |||| ||||||| ||| || || |||||||| || ||||| |
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| T |
24418191 |
cagagattaatgaattgaaggacttgcagagacagcgaagttgaaggagtaacttcacgggaagcctacacagaatctcagctacaagatcgaagggaag |
24418290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1004 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1004
Description:
Target: scaffold1004; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 1475 - 1364
Alignment:
| Q |
13 |
cagagattaaagaattgaaggacttacagaggcagcgaagctgaatgagtaactttaccggaattctacacaaaatttctgcaacaagatcaaacggaag |
112 |
Q |
| |
|
|||| ||||| || ||||| ||||| |||| |||||||| |||| |||||| || || |||| |||||||| ||||| ||||||||||| |||||||| |
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| T |
1475 |
cagaaattaacgatttgaaagacttgcagacgcagcgaaattgaaggagtaatttcacgggaagtctacacaggatttcggcaacaagatctaacggaag |
1376 |
T |
|
| Q |
113 |
cgtgggtagtgg |
124 |
Q |
| |
|
|||||||||| |
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| T |
1375 |
actgggtagtgg |
1364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0760 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0760
Description:
Target: scaffold0760; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 3969 - 3858
Alignment:
| Q |
13 |
cagagattaaagaattgaaggacttacagaggcagcgaagctgaatgagtaactttaccggaattctacacaaaatttctgcaacaagatcaaacggaag |
112 |
Q |
| |
|
|||| ||||| || ||||| ||||| |||| |||||||| |||| |||||| || || |||| ||||||| ||||| ||||||||||| |||||||| |
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| T |
3969 |
cagaaattaaggatttgaaagacttgcagacgcagcgaaattgaaggagtaatttcacgggaagcctacacaggatttcggcaacaagatctaacggaag |
3870 |
T |
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| Q |
113 |
cgtgggtagtgg |
124 |
Q |
| |
|
|||||||||| |
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|
| T |
3869 |
actgggtagtgg |
3858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 27754965 - 27754913
Alignment:
| Q |
15 |
gagattaaagaattgaaggacttacagaggcagcgaagctgaatgagtaactt |
67 |
Q |
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|||||||||||||| ||||||||||||||||| | ||| |||| |||||||| |
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| T |
27754965 |
gagattaaagaattaaaggacttacagaggcatcaaagttgaagtagtaactt |
27754913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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