View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1944_low_55 (Length: 239)
Name: NF1944_low_55
Description: NF1944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1944_low_55 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 42441108 - 42441328
Alignment:
| Q |
1 |
ctaaatctctcataatgtttagccagtagttttccttagcagagtgaccttctttcaactctaactactgaaatattctccatctatttaaccatcttta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42441108 |
ctaaatctctcataatgtttagccagtagttttccttagcagagtgaccttctttcaactctaactactgaaatattctccatctatttaaccatcttta |
42441207 |
T |
|
| Q |
101 |
gctctacagtaattctccacagtactcaaatcacctaaaacaatactttaccatgtttcccatactaggggctaccacaatttccgcttattttcaatct |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42441208 |
gctctacagtaattctccacagtactaaaatcacctaaaacaatactttaccatgtttcccatactaggggctaccacaatttccgcttattttcaatct |
42441307 |
T |
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| Q |
201 |
tgtattctataaccactcacg |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
42441308 |
tgtattctataaccactcacg |
42441328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 42438043 - 42438226
Alignment:
| Q |
1 |
ctaaatctctcataatgtttagccagtagttttccttagcagagtgaccttctttcaactctaactactgaaatattctccatctatttaaccatcttta |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||| || | || ||||||||| ||||||||||||||| |||||||||| ||||||| | ||||| |
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| T |
42438043 |
ctaaatctctcataatgtttagcctgtagtttttcttggcgggatggccttctttcgactctaactactgaactattctccatttatttaaactacttta |
42438142 |
T |
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| Q |
101 |
gctctacagtaattctccaca-gtactcaaatcacctaaaacaatactttaccatgtttcccatactaggggctaccacaatttcc |
185 |
Q |
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||||||||| | ||||||||| | ||||||||||||||||||||| | |||||||||| | |||| |||||||||||||||||| |
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| T |
42438143 |
gctctacagaacttctccacacatgctcaaatcacctaaaacaatagtctaccatgttttctatac--ggggctaccacaatttcc |
42438226 |
T |
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