View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1944_low_56 (Length: 238)
Name: NF1944_low_56
Description: NF1944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1944_low_56 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 40805599 - 40805821
Alignment:
| Q |
1 |
gtggtccataattttcttcaccacacgagtgtcattcaaattttcattaatctcttcaattgattaatagttgttttgttccacacagtggtccaaactt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40805599 |
gtggtccataattttcttcaccacacgagtgtcattcaaattttcattaatctcttcaattgattaatagttgttttgttccacacagtggtccaaactt |
40805698 |
T |
|
| Q |
101 |
ctgctttttattatacctatacgatttacaatttgcgttctatcacagaacttattaaaatgggctttttagtggacccttaaactgtgattagaaatag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40805699 |
ctgctttttattatacctatacgatttacaatttgcgttctatcacagaacttattaaaatgggctttttagtggacccttaaactgtgattagaaatag |
40805798 |
T |
|
| Q |
201 |
aaaagatatgtgatcttatattt |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
40805799 |
aaaagatatgtgatcttatattt |
40805821 |
T |
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