View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1944_low_57 (Length: 236)
Name: NF1944_low_57
Description: NF1944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1944_low_57 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 51577126 - 51577346
Alignment:
| Q |
1 |
cattccattttcatgtacctgcacgatagttataaataagttgaatgtgaattcaggataaagcaagagaccaagaaattgctagtctggtgcgtttcgg |
100 |
Q |
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| T |
51577126 |
cattccattttcatgtacctgcacgatagttataaataagttgaatgtgaattcaggataaagcaagagaccaagaaattgctagtctggtgcgtttcgg |
51577225 |
T |
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| Q |
101 |
ataacaatatagaatatgtggatttacttgaccagattcaaggtagaattcttgagctaaacaaacagaaaggcaaacagcgtttgaatttggaggtagg |
200 |
Q |
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| T |
51577226 |
ataacaatatagaatatgtggatttacttgaccagattcaaggtagaattcttgagctaaacaaacagaaaggcaaacagcgtttgaatttggaggtagg |
51577325 |
T |
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| Q |
201 |
gtcatcttctaaaggttaaat |
221 |
Q |
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| T |
51577326 |
gtcatcttctaaaggttaaat |
51577346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 2363771 - 2363860
Alignment:
| Q |
1 |
cattccattttcatgtacctgcacgatagttataaataagttgaatgtgaattcaggataaagcaagagaccaagaaattgctagtctgg |
90 |
Q |
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| T |
2363771 |
cattccatcttcatgcacctggatgtaatttataaatattttcaatttgaaatcaggataaggcaaaagaccaagaaattgctagtctgg |
2363860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 161
Target Start/End: Original strand, 2363874 - 2363945
Alignment:
| Q |
90 |
gtgcgtttcggataacaatatagaatatgtggatttacttgaccagattcaaggtagaattcttgagctaaa |
161 |
Q |
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| T |
2363874 |
gtgcctttcagataacaatatggaatccgtggatttactgaacgagattcacggtagaattcatgagctaaa |
2363945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 88
Target Start/End: Complemental strand, 39492866 - 39492803
Alignment:
| Q |
25 |
gatagttataaataagttgaatgtgaattcaggataaagcaagagaccaagaaattgctagtct |
88 |
Q |
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| T |
39492866 |
gatagttataaataatttgaatatgaactcaggacaaggccagagatcaagaagttgctagtct |
39492803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 88
Target Start/End: Original strand, 33563679 - 33563719
Alignment:
| Q |
48 |
tgaattcaggataaagcaagagaccaagaaattgctagtct |
88 |
Q |
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| T |
33563679 |
tgaattcaggataaggccagagatcaagaaattgctagtct |
33563719 |
T |
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