View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1944_low_59 (Length: 235)
Name: NF1944_low_59
Description: NF1944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1944_low_59 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 17185006 - 17185226
Alignment:
| Q |
1 |
atttatcagccaaatccttattcaacataagcctaattaaaccgggacagatatcactctttgtaagaaactttttgatctcccattgctgatcattaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17185006 |
atttatcagccaaatccttattcaacataagcctaattaaaccgggacagatatcactctttgtaagaaactttttgatctcccattgctgatcattaac |
17185105 |
T |
|
| Q |
101 |
agcatcgatttcttgacctccaagcttttgttcgttagcgatttgatcgcagccacaggagggggaagacggtgaaaaatggagacagacggtggaatca |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||| |||||||||||||| |||||||||| |||| || | |||||||||||||| ||||||||| |
|
|
| T |
17185106 |
agcatcgatttcttgacccccaagcttttgttccgtagcaatttgatcgcagccgcaggagggggtagacagtaagaaatggagacagactgtggaatca |
17185205 |
T |
|
| Q |
201 |
tggatgggttggaggagtttc |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
17185206 |
tggatgggttggaggagtttc |
17185226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 17195440 - 17195220
Alignment:
| Q |
1 |
atttatcagccaaatccttattcaacataagcctaattaaaccgggacagatatcactctttgtaagaaactttttgatctcccattgctgatcattaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17195440 |
atttatcagccaaatccttattcaacataagcctaattaaaccgggacagatatcactctttgtaagaaactttttgatctcccattgctgatcattaac |
17195341 |
T |
|
| Q |
101 |
agcatcgatttcttgacctccaagcttttgttcgttagcgatttgatcgcagccacaggagggggaagacggtgaaaaatggagacagacggtggaatca |
200 |
Q |
| |
|
||||| |||||||||||| |||||||||||||| |||| |||||||||||||| ||||| |||| |||| || | |||||||||||||||||||||||| |
|
|
| T |
17195340 |
agcattgatttcttgacccccaagcttttgttccgtagcaatttgatcgcagccgcaggacggggtagacagtaagaaatggagacagacggtggaatca |
17195241 |
T |
|
| Q |
201 |
tggatgggttggaggagtttc |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
17195240 |
tggatgggttggaggagtttc |
17195220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University