View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1944_low_6 (Length: 558)
Name: NF1944_low_6
Description: NF1944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1944_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 21 - 553
Target Start/End: Original strand, 11297466 - 11297998
Alignment:
| Q |
21 |
attttcgcccaaaaacgtcgcagacacaccggcacaagttttatttcttttgaaattcttgaattccgtctctcccctaatgacgtaggctagttgcttt |
120 |
Q |
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| T |
11297466 |
attttcgcccaaaaacgtcgcagacacaccggcacaagttttatttcttttgaaattcttgaattccgtctctcccctaacgacgtaggctagttgcttt |
11297565 |
T |
|
| Q |
121 |
cctatgttttgtatgtcaaagccagccatgcttgaaccattctctccatgctttgcggcaactgaagactccaattgcatattgaagtctttcttatcct |
220 |
Q |
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| T |
11297566 |
cctatgttttgtatgtcaaagccagccatgcttgaaccattctctccatgctttgcggcaactgaagactccaattgcatattaaagtctttcttatcct |
11297665 |
T |
|
| Q |
221 |
ttgcaacctgaacaccaaaagatgctggaaatttattgccaattgctagactgttttcaatggttactccatcataaccacaatcatgatcccaaccatt |
320 |
Q |
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| T |
11297666 |
ttgcaacctgaacaccaaaagatgctggaaatttattggcaattgctagactgttttcaatggttactccatcataaccacaatcatgatcccaaccatt |
11297765 |
T |
|
| Q |
321 |
cgcatccaacaccggcctcgtaagaaactgtgaagttgattctaagaaacgatatctaaagaccgggttgtcaccatcaaaggatagcggcatgatcata |
420 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11297766 |
cgcatccaacaccggcctcgtaagaaactgtgaagttgattctaagaaatgatatctaaagaccgggttgtcaccatcaaaggatagcggcatgatcata |
11297865 |
T |
|
| Q |
421 |
tcatgcaatggagtcggcactgcatctggactttccatattctgagcaccttcttctgggtagccatattctgatttacctttattcttctttatctccc |
520 |
Q |
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| T |
11297866 |
tcatgcaatggagtcggcactgcatttggactttccatattctgagcaccttcttctgtgtagccatattctgatttacctttattcttctttatctccc |
11297965 |
T |
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| Q |
521 |
tcatccttctcaattcctctttcctttgcttct |
553 |
Q |
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| T |
11297966 |
tcatccttctcaattcctctttccattgcttct |
11297998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 57 - 431
Target Start/End: Complemental strand, 36609306 - 36608932
Alignment:
| Q |
57 |
agttttatttcttttgaaattcttgaattccgtctctcccctaatgacgtaggctagttgctttcctatgttttgtatgtcaaagccagccatgcttgaa |
156 |
Q |
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||||||||||||||||||||| ||||||| ||||| || |||| | ||| || | |||||||| ||||| || ||||||||||| |||||| | || |
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| T |
36609306 |
agttttatttcttttgaaatttttgaatttggtctcgcctctaacaatgtatgccatctgctttccaatgttctgaatgtcaaagcctgccatggtcgat |
36609207 |
T |
|
| Q |
157 |
ccattctctccatgctttgcggcaactgaagactccaattgcatattgaagtctttcttatcctttgcaacctgaacaccaaaagatgctggaaatttat |
256 |
Q |
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||||| |||||||| || |||||||| || || ||||| || || |||| |||| ||| || |||| || |||||| || | ||| || ||||| | |
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| T |
36609206 |
ccattttctccatgtttagcggcaaccgatgaatccaagtgaatgctgaaatcttgcttgtcttttgttacttgaacagtaactgctgccgggaatttgt |
36609107 |
T |
|
| Q |
257 |
tgccaattgctagactgttttcaatggttactccatcataaccacaatcatgatcccaaccattcgcatccaacaccggcctcgtaagaaactgtgaagt |
356 |
Q |
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|| || || | ||||||||||||| | || || ||||||||||| || || ||||||| || | ||||| |||||||| || || ||||| ||||| |
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| T |
36609106 |
tgatgatggccacactgttttcaatgttaacaccgtcataaccacagtcgtggtcccaactatgggtgtccaagaccggccttgtcagcaactgggaagt |
36609007 |
T |
|
| Q |
357 |
tgattctaagaaacgatatctaaagaccgggttgtcaccatcaaaggatagcggcatgatcatatcatgcaatgg |
431 |
Q |
| |
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|| ||| |||||||| |||||| || | || || |||| |||||||||| | |||| |||||||| ||||||| |
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| T |
36609006 |
tggttccaagaaacggtatctataggctggattatcactatcaaaggatggtggcaacgtcatatcaggcaatgg |
36608932 |
T |
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