View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1944_low_60 (Length: 235)

Name: NF1944_low_60
Description: NF1944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1944_low_60
NF1944_low_60
[»] chr1 (9 HSPs)
chr1 (1-220)||(9475088-9475310)
chr1 (1-142)||(8924873-8925014)
chr1 (5-142)||(9359391-9359528)
chr1 (7-142)||(9335655-9335790)
chr1 (1-140)||(8946008-8946144)
chr1 (1-140)||(8936514-8936653)
chr1 (1-142)||(8960035-8960176)
chr1 (1-142)||(9306712-9306853)
chr1 (5-89)||(9244985-9245069)
[»] chr3 (1 HSPs)
chr3 (1-142)||(9168541-9168682)
[»] chr6 (1 HSPs)
chr6 (4-105)||(15912697-15912798)


Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 9475310 - 9475088
Alignment:
Q  1 tacctcggatcaccacaggttgttggatcattcttgagtcgaaacggatgttttatgtttgtgagtttgccacatgaagaaggtggacaatttgtttggt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9475310 tacctcggatcaccacaggttgttggatcattcttgagtcgaaacggatgttttatgtttgtgagtttgccacatgaagaaggtggacaatttgtttggt 9475211  T
Q  101 tattattactattggtagcctcacatgtttgatgatga---tgatacactaatatcaaaataacaaccgtagtttggaggaagcatacggatgattccat 197  Q
    ||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9475210 tattattactattggtagcctcacatgtttgatgatgatgatgatacactaatatcaaaataacaaccgtagtttggaggaagcatacggatgattccat 9475111  T
Q  198 tagagcaggagaacggttattct 220  Q
    ||||||||||||| |||||||||    
T  9475110 tagagcaggagaagggttattct 9475088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 8924873 - 8925014
Alignment:
Q  1 tacctcggatcaccacaggttgttggatcattcttgagtcgaaacggatgttttatgtttgtgagtttgccacatgaagaaggtggacaatttgtttggt 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||  ||| |||||||||||||||||||||||||| ||||||||    
T  8924873 tacctcggatcaccacaggttgttggatcattcttaagtcgaaacggatattttatgttgttgattttgccacatgaagaaggtggacaatatgtttggt 8924972  T
Q  101 tattattactattggtagcctcacatgtttgatgatgatgat 142  Q
    || || || |  |  | || ||||||||||||||||||||||    
T  8924973 tactagtatttgtaattgcatcacatgtttgatgatgatgat 8925014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 142
Target Start/End: Original strand, 9359391 - 9359528
Alignment:
Q  5 tcggatcaccacaggttgttggatcattcttgagtcgaaacggatgttttatgtttgtgagtttgccacatgaagaaggtggacaatttgtttggttatt 104  Q
    |||||||||||||| ||||||| |||||| | |||||||| ||||||  ||||||||||| |||||| ||||||||||||||||||| ||||||||||||    
T  9359391 tcggatcaccacagcttgttgggtcattcataagtcgaaaaggatgtgatatgtttgtgattttgccgcatgaagaaggtggacaatatgtttggttatt 9359490  T
Q  105 attactattggtagcctcacatgtttgatgatgatgat 142  Q
      || || |  | || ||||||||||||||||||||||    
T  9359491 tgtattagtaattgcatcacatgtttgatgatgatgat 9359528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 7 - 142
Target Start/End: Original strand, 9335655 - 9335790
Alignment:
Q  7 ggatcaccacaggttgttggatcattcttgagtcgaaacggatgttttatgtttgtgagtttgccacatgaagaaggtggacaatttgtttggttattat 106  Q
    |||||||||||||||| ||| |||||||| ||||||||||||||||| |||||  ||| |||||| ||||||||||||||||||| ||||| ||||||      
T  9335655 ggatcaccacaggttgctgggtcattcttaagtcgaaacggatgtttgatgttgctgattttgccgcatgaagaaggtggacaatatgttttgttatttg 9335754  T
Q  107 tactattggtagcctcacatgtttgatgatgatgat 142  Q
    || || |  | || ||||||||||||||||||||||    
T  9335755 tattagtaattgcatcacatgtttgatgatgatgat 9335790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 8946008 - 8946144
Alignment:
Q  1 tacctcggatcaccacaggttgttggatcattcttgagtcgaaacggatgttttatgtttgtgagtttgccacatgaagaaggtggacaatttgtttggt 100  Q
    |||||||||||||| ||||||| |||||||||||| ||||| || ||||  ||||||||  ||| |||||||||||||||||| ||||||   ||||  |    
T  8946008 tacctcggatcaccgcaggttgctggatcattcttaagtcggaagggatactttatgttgctgattttgccacatgaagaagggggacaa---gttttat 8946104  T
Q  101 tattattactattggtagcctcacatgtttgatgatgatg 140  Q
    || |||||||||| || || ||||||||||||||||||||    
T  8946105 taatattactatttgttgcatcacatgtttgatgatgatg 8946144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 8936514 - 8936653
Alignment:
Q  1 tacctcggatcaccacaggttgttggatcattcttgagtcgaaacggatgttttatgtttgtgagtttgccacatgaagaaggtggacaatttgtttggt 100  Q
    ||||| ||||||||||| | ||||||||||| ||| |||||||| |||||| |||||||||||| |||||| |||||||||||||||||   ||||||||    
T  8936514 taccttggatcaccacatgatgttggatcatccttaagtcgaaatggatgtgttatgtttgtgattttgccgcatgaagaaggtggacagaatgtttggt 8936613  T
Q  101 tattattactattggtagcctcacatgtttgatgatgatg 140  Q
    || || || |  |  | || ||||||||||||||||||||    
T  8936614 tactagtatttgtaattgcatcacatgtttgatgatgatg 8936653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 8960035 - 8960176
Alignment:
Q  1 tacctcggatcaccacaggttgttggatcattcttgagtcgaaacggatgttttatgtttgtgagtttgccacatgaagaaggtggacaatttgtttggt 100  Q
    ||||||||||||||||| | |||||| |||| ||| |||||||| ||||||  |||||||   | |||||||||||||||||||||||||| ||||||||    
T  8960035 tacctcggatcaccacatgatgttgggtcatccttaagtcgaaaaggatgtgatatgtttccaattttgccacatgaagaaggtggacaatatgtttggt 8960134  T
Q  101 tattattactattggtagcctcacatgtttgatgatgatgat 142  Q
    || || || |  |  | || ||||||||||||||||||||||    
T  8960135 tactagtatttgtaattgcatcacatgtttgatgatgatgat 8960176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 9306853 - 9306712
Alignment:
Q  1 tacctcggatcaccacaggttgttggatcattcttgagtcgaaacggatgttttatgtttgtgagtttgccacatgaagaaggtggacaatttgtttggt 100  Q
    |||||||||||||| ||| ||| |||||||||||  |||||||| ||||||||||||||| ||| | |||||||||| || | |||||||| ||||||||    
T  9306853 tacctcggatcaccgcagtttgctggatcattctgaagtcgaaaaggatgttttatgtttctgattgtgccacatgatgaggatggacaatatgtttggt 9306754  T
Q  101 tattattactattggtagcctcacatgtttgatgatgatgat 142  Q
    ||||| || || |  | || | |||| |||||||||||||||    
T  9306753 tattagtaatagtaattgcataacatctttgatgatgatgat 9306712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 89
Target Start/End: Complemental strand, 9245069 - 9244985
Alignment:
Q  5 tcggatcaccacaggttgttggatcattcttgagtcgaaacggatgttttatgtttgtgagtttgccacatgaagaaggtggaca 89  Q
    |||||||||||||| ||||||| |||||| | ||||||||||||||||| |||||  ||| ||| ||||||||||||||||||||    
T  9245069 tcggatcaccacagcttgttgggtcattcataagtcgaaacggatgtttgatgttgctgatttttccacatgaagaaggtggaca 9244985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 9168541 - 9168682
Alignment:
Q  1 tacctcggatcaccacaggttgttggatcattcttgagtcgaaacggatgttttatgtttgtgagtttgccacatgaagaaggtggacaatttgtttggt 100  Q
    |||||||||||||||||| ||||||||||||| || ||||| |||||||||||||||||| | | ||||||||||||||||||||||||   | ||||||    
T  9168541 tacctcggatcaccacagtttgttggatcatttttaagtcggaacggatgttttatgtttctcattttgccacatgaagaaggtggacataatttttggt 9168640  T
Q  101 tattattactattggtagcctcacatgtttgatgatgatgat 142  Q
    ||| | || || | || || ||||||| ||||||||||||||    
T  9168641 tatcactattactagttgcatcacatgcttgatgatgatgat 9168682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 15912798 - 15912697
Alignment:
Q  4 ctcggatcaccacaggttgttggatcattcttgagtcgaaacggatgttttatgtttgtgagtttgccacatgaagaaggtggacaatttgtttggttat 103  Q
    |||||||| |||||||| | ||| |||||||| |||||||| ||||||||||||||  ||| ||| || |||||||||| |||||||  ||||| |||||    
T  15912798 ctcggatccccacaggtcgctgggtcattcttaagtcgaaatggatgttttatgttgctgattttaccgcatgaagaagttggacaaaatgttttgttat 15912699  T
Q  104 ta 105  Q
    ||    
T  15912698 ta 15912697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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