View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1944_low_63 (Length: 228)
Name: NF1944_low_63
Description: NF1944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1944_low_63 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 14 - 214
Target Start/End: Original strand, 39395716 - 39395913
Alignment:
| Q |
14 |
cagagacagagtggaaggtaccctctccgctcaccgtaacgaacttgtttcccttctctccaggttggttttatttccttcttctttgtcaaccgcgcta |
113 |
Q |
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| T |
39395716 |
cagagacagagtggaaggtaccctctccgctcaccgtaacgaacttgtttcccttctctccaggttggttttatttccttc---tttgtcaaccgcgcta |
39395812 |
T |
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| Q |
114 |
ttcattcgtataatcatttatcttcttcatcaagttaacctgagattcaaaatgttggttgctttagagaagaattgaatctaatttgaagctagaaatt |
213 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
39395813 |
ttcattcgtataatcatgtatcttcttcatcaagttaacctgagattcaaaatgttggttgctttagagaagaattgaatctaatttgaatctaaaaatt |
39395912 |
T |
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