View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1944_low_66 (Length: 219)

Name: NF1944_low_66
Description: NF1944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1944_low_66
NF1944_low_66
[»] chr7 (8 HSPs)
chr7 (1-113)||(4303107-4303219)
chr7 (13-113)||(11001101-11001201)
chr7 (16-101)||(1369529-1369614)
chr7 (13-113)||(8915448-8915547)
chr7 (47-110)||(1786420-1786483)
chr7 (13-113)||(1217487-1217585)
chr7 (13-113)||(13883010-13883111)
chr7 (13-110)||(11228432-11228528)
[»] chr2 (11 HSPs)
chr2 (1-113)||(31635985-31636097)
chr2 (17-108)||(280294-280385)
chr2 (13-113)||(35681916-35682016)
chr2 (44-113)||(27952652-27952721)
chr2 (13-113)||(33053131-33053230)
chr2 (51-111)||(2165624-2165684)
chr2 (13-112)||(32162243-32162341)
chr2 (14-113)||(22011095-22011194)
chr2 (55-112)||(23457389-23457446)
chr2 (13-89)||(18945663-18945739)
chr2 (13-113)||(36648585-36648685)
[»] chr1 (8 HSPs)
chr1 (13-110)||(10926906-10927003)
chr1 (13-105)||(13441924-13442014)
chr1 (45-110)||(8966030-8966095)
chr1 (13-113)||(10927814-10927914)
chr1 (13-113)||(23988935-23989035)
chr1 (15-110)||(40805571-40805666)
chr1 (13-98)||(31915247-31915332)
chr1 (45-113)||(31522576-31522644)
[»] chr8 (6 HSPs)
chr8 (16-113)||(23573249-23573346)
chr8 (17-113)||(2688887-2688981)
chr8 (51-113)||(22922177-22922239)
chr8 (40-111)||(22512377-22512448)
chr8 (55-113)||(26377776-26377834)
chr8 (13-107)||(24577811-24577905)
[»] chr6 (14 HSPs)
chr6 (13-113)||(18203147-18203246)
chr6 (13-113)||(22873522-22873622)
chr6 (13-113)||(34374062-34374162)
chr6 (13-113)||(22888965-22889065)
chr6 (13-113)||(22910508-22910608)
chr6 (51-113)||(3541947-3542009)
chr6 (51-113)||(30049617-30049679)
chr6 (51-113)||(30051904-30051966)
chr6 (13-113)||(12881735-12881834)
chr6 (13-113)||(12778684-12778782)
chr6 (52-102)||(18720019-18720069)
chr6 (53-113)||(32361109-32361169)
chr6 (50-105)||(8047663-8047718)
chr6 (83-111)||(11194398-11194426)
[»] chr4 (7 HSPs)
chr4 (13-105)||(22716324-22716416)
chr4 (13-105)||(22988801-22988893)
chr4 (17-113)||(6659656-6659751)
chr4 (13-113)||(10494634-10494734)
chr4 (13-111)||(7635000-7635098)
chr4 (51-113)||(13085421-13085483)
chr4 (35-105)||(9260297-9260367)
[»] chr5 (3 HSPs)
chr5 (14-105)||(21845225-21845316)
chr5 (13-113)||(18252130-18252230)
chr5 (51-106)||(19677629-19677684)
[»] scaffold0054 (3 HSPs)
scaffold0054 (13-113)||(10361-10461)
scaffold0054 (1-111)||(49012-49122)
scaffold0054 (18-111)||(37431-37523)
[»] chr3 (5 HSPs)
chr3 (17-112)||(365879-365973)
chr3 (13-113)||(8536658-8536758)
chr3 (63-113)||(3064066-3064116)
chr3 (15-97)||(2473000-2473084)
chr3 (65-110)||(24516698-24516743)
[»] scaffold0110 (1 HSPs)
scaffold0110 (51-113)||(45943-46005)
[»] scaffold0024 (2 HSPs)
scaffold0024 (13-113)||(145444-145544)
scaffold0024 (13-113)||(144179-144282)


Alignment Details
Target: chr7 (Bit Score: 113; Significance: 2e-57; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 4303107 - 4303219
Alignment:
Q  1 cgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4303107 cgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagac 4303206  T
Q  101 tgatgtaggaggg 113  Q
    |||||||||||||    
T  4303207 tgatgtaggaggg 4303219  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 11001201 - 11001101
Alignment:
Q  13 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggagg 112  Q
    ||||| ||||||||||||||  |||||||||||||||||||||||| |||||||| | ||| ||||||||||||||||||||||||||||||||||||||    
T  11001201 ctctttttcattggaggagttaacatgcatgggaagctctttatcacaatgagaatttggggtcgagttcttcagaggtggaggagactgatgtaggagg 11001102  T
Q  113 g 113  Q
    |    
T  11001101 g 11001101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 1369529 - 1369614
Alignment:
Q  16 ttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagact 101  Q
    |||||||||||||||||| |||| ||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||||    
T  1369529 ttgttcattggaggagtcaacattcatgggaagctctttatcagaataagaactcgggctcgagttcttcagaggtggaggagact 1369614  T

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Target: chr7; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 8915547 - 8915448
Alignment:
Q  13 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggagg 112  Q
    ||||||||||| ||||||||| |||||||||||| ||| ||||| | |||||||| ||||| || |||||||||||| ||||||||||||||||||||||    
T  8915547 ctcttgttcatcggaggagtcaacatgcatggga-gctttttattagaatgagaattcggggtctagttcttcagagatggaggagactgatgtaggagg 8915449  T

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Target: chr7; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 47 - 110
Target Start/End: Original strand, 1786420 - 1786483
Alignment:
Q  47 agctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtagga 110  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||    
T  1786420 agctctttatcaaaatgagaactcgaggtcgagttcttcagaggtggaggagactcatgtagga 1786483  T

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Target: chr7; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 1217585 - 1217487
Alignment:
Q  13 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggagg 112  Q
    |||||||| |||||||||  |||||||||||  || ||||||||||||| | ||||||||| |||||||||||| |||||||||||||||||| ||||||    
T  1217585 ctcttgttaattggaggacacgacatgcatga-aatctctttatcaaaacgtgaactcggg-tcgagttcttcaaaggtggaggagactgatgcaggagg 1217488  T

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Target: chr7; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 13883111 - 13883010
Alignment:
Q  13 ctcttgttcattggaggagtcgacat--gcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtagga 110  Q
    |||||||| |||||||||| | ||||  ||||| ||| |||||||| | |||||||||||||| |||||||||| ||||||||| |||||||||| ||||    
T  13883111 ctcttgtttattggaggagccaacatatgcatgagaatctctttattagaatgagaactcggg-tcgagttctttagaggtggacgagactgatgcagga 13883013  T
Q  111 ggg 113  Q
    |||    
T  13883012 ggg 13883010  T

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Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 11228432 - 11228528
Alignment:
Q  13 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtagga 110  Q
    ||||||||||||  |||||||  ||||||||||||| ||||||| | ||||||||||||||  | ||||||| ||||| |||| ||||||||||||||    
T  11228432 ctcttgttcattataggagtcatcatgcatgggaagttctttattagaatgagaactcgggggcaagttcttaagagg-ggagaagactgatgtagga 11228528  T

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Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 31635985 - 31636097
Alignment:
Q  1 cgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagac 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||  ||||||||||||||||||||||||||    
T  31635985 cgggtgggtgtgctcttgttcattggaggagtcaacatgcatgggaaactctttatctaaatgagaactcggattcgagttcttcagaggtggaggagac 31636084  T
Q  101 tgatgtaggaggg 113  Q
    |||||||||||||    
T  31636085 tgatgtaggaggg 31636097  T

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Target: chr2; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 280385 - 280294
Alignment:
Q  17 tgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtag 108  Q
    |||||||||||||| || ||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  280385 tgttcattggaggattcaacatgcatgtgaagctctttatcagaatgagaactcggggtcgagttcttcagaggtggaggagactgatgtag 280294  T

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Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 113
Target Start/End: Original strand, 35681916 - 35682016
Alignment:
Q  13 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggagg 112  Q
    ||||||||||||| ||||||| |||||||| | ||||||||||||| || ||||||| ||| ||||||||||||||||||||||||||||||| ||||||    
T  35681916 ctcttgttcattgaaggagtcaacatgcatagaaagctctttatcagaaagagaacttggggtcgagttcttcagaggtggaggagactgatgcaggagg 35682015  T
Q  113 g 113  Q
    |    
T  35682016 g 35682016  T

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Target: chr2; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 27952721 - 27952652
Alignment:
Q  44 ggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 113  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  27952721 ggaagctctttatcagaatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggaggg 27952652  T

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Target: chr2; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 113
Target Start/End: Original strand, 33053131 - 33053230
Alignment:
Q  13 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggagg 112  Q
    |||||||| ||| |||||||||||||| ||| |||||||||||| | ||| ||||| |||| |||||||||||||||||||||||||||||||||| |||    
T  33053131 ctcttgtttattagaggagtcgacatgaatgagaagctctttattagaataagaac-cggggtcgagttcttcagaggtggaggagactgatgtagaagg 33053229  T

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Target: chr2; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 51 - 111
Target Start/End: Original strand, 2165624 - 2165684
Alignment:
Q  51 ctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggag 111  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2165624 ctttatcaagatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggag 2165684  T

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Target: chr2; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 32162341 - 32162243
Alignment:
Q  13 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggagg 112  Q
    |||||||||||| ||| |||| |||||||||||||||||||||||| |||||||||||  | | ||||| ||||||| ||||||||||| ||||| ||||    
T  32162341 ctcttgttcattagag-agtcaacatgcatgggaagctctttatcagaatgagaactcaaggttgagtttttcagagatggaggagactaatgtaagagg 32162243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 22011095 - 22011194
Alignment:
Q  14 tcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 113  Q
    |||||||||| | ||||||| |||| |||| |||  ||||||| | ||||||||||| || |||||||||| |||||||||||||| ||||| |||||||    
T  22011095 tcttgttcatcgaaggagtcaacatacatgagaaattctttattagaatgagaactcagggtcgagttctttagaggtggaggagagtgatgcaggaggg 22011194  T

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Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 112
Target Start/End: Original strand, 23457389 - 23457446
Alignment:
Q  55 atcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggagg 112  Q
    |||| ||||||||||||||   |||||||||||||||||||| |||||||||||||||    
T  23457389 atcagaatgagaactcgggtcagagttcttcagaggtggaggcgactgatgtaggagg 23457446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 18945663 - 18945739
Alignment:
Q  13 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagag 89  Q
    ||||||||||||| ||||||  ||||| ||| ||| ||||| |||| |||||||| ||||||||||||| |||||||    
T  18945663 ctcttgttcattgcaggagttaacatgaatgagaaactcttaatcagaatgagaattcgggatcgagtttttcagag 18945739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 13 - 113
Target Start/End: Original strand, 36648585 - 36648685
Alignment:
Q  13 ctcttgttcattggaggagtcgacatgcatgggaagctcttt-atcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggag 111  Q
    ||||| ||||||||| |||||  ||||||||| |||| |||| |||| ||  |||||| ||  |||||||||||| || ||||||||||| |||||||||    
T  36648585 ctcttattcattggaagagtcatcatgcatgg-aagcacttttatcagaacaagaactgggagtcgagttcttcatagatggaggagactcatgtaggag 36648683  T
Q  112 gg 113  Q
    ||    
T  36648684 gg 36648685  T

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Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 10926906 - 10927003
Alignment:
Q  13 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtagga 110  Q
    ||||| ||||||||||||||| |||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10926906 ctcttattcattggaggagtcaacatgcatgggaagttctttatcagaatgagaactcggggtcgagttcttcagaggtggaggagactgatgtagga 10927003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 13442014 - 13441924
Alignment:
Q  13 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatg 105  Q
    |||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||   |||||| ||||||||||||||||||||||||||    
T  13442014 ctcttgctcattggaggagtcaacatgcatgggaagctctttatcagaatgagaact--tgatcgaattcttcagaggtggaggagactgatg 13441924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 45 - 110
Target Start/End: Complemental strand, 8966095 - 8966030
Alignment:
Q  45 gaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtagga 110  Q
    |||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  8966095 gaagctctttatcagaatgagaactcagggtcgagttcttcagaggtggaggagactgatgtagga 8966030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 13 - 113
Target Start/End: Original strand, 10927814 - 10927914
Alignment:
Q  13 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggagg 112  Q
    |||||||| |||| | ||||| || |||||| ||| |||||||| | |||||||||||||| |||||||||||||| ||||||||||||| |||||||||    
T  10927814 ctcttgtttattgtaagagtcaacttgcatgagaaactctttattagaatgagaactcggggtcgagttcttcagaagtggaggagactgttgtaggagg 10927913  T
Q  113 g 113  Q
    |    
T  10927914 g 10927914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 13 - 113
Target Start/End: Original strand, 23988935 - 23989035
Alignment:
Q  13 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggagg 112  Q
    |||||| |||||| ||||||  ||||||| ||||||||||||| ||||| ||||||||  | |||||||||||||||||| |||||||| ||||||||||    
T  23988935 ctcttgctcattgaaggagttaacatgcaagggaagctctttaccaaaacgagaactcaaggtcgagttcttcagaggtgtaggagactaatgtaggagg 23989034  T
Q  113 g 113  Q
    |    
T  23989035 g 23989035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 15 - 110
Target Start/End: Original strand, 40805571 - 40805666
Alignment:
Q  15 cttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtagga 110  Q
    ||||||||| |||||||||  |||||||| ||| ||| |||||| ||  |||||||||| |||| ||||| | |||||||||||||||||||||||    
T  40805571 cttgttcatcggaggagtcatcatgcatgtgaaactccttatcagaacaagaactcggggtcgacttctttaaaggtggaggagactgatgtagga 40805666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 31915247 - 31915332
Alignment:
Q  13 ctcttgttcattggaggagtcgaca-tgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggag 98  Q
    ||||||||||||||||||||| ||| || |||| || ||||| || | || ||||||||||| | ||||||||||||||||||||||    
T  31915247 ctcttgttcattggaggagtcaacaatgaatggaaaactctt-attagaacgagaactcggggttgagttcttcagaggtggaggag 31915332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 113
Target Start/End: Original strand, 31522576 - 31522644
Alignment:
Q  45 gaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 113  Q
    ||||||| |||||| || |||||||||   |||||||||||||||||||| | | ||||||||||||||    
T  31522576 gaagctcattatcagaacgagaactcgaagtcgagttcttcagaggtggaaggggctgatgtaggaggg 31522644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 23573249 - 23573346
Alignment:
Q  16 ttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 113  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||| |||||| ||||    
T  23573249 ttgttcattggaggagtcaacatgcatgggaagctctttatcaaaatgaaaactccgggtcgagttcttcagaggtggaggagactaatgtagaaggg 23573346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 2688887 - 2688981
Alignment:
Q  17 tgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 113  Q
    ||||||||||||||||| ||||||||||||| ||||  || | |||||||||||| |||||||||||||| |||||||||||||| |||||||||||    
T  2688887 tgttcattggaggagtcaacatgcatgggaaactct--attagaatgagaactcgtgatcgagttcttcataggtggaggagactcatgtaggaggg 2688981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 51 - 113
Target Start/End: Complemental strand, 22922239 - 22922177
Alignment:
Q  51 ctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 113  Q
    |||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  22922239 ctttatgaagatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggaggg 22922177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 40 - 111
Target Start/End: Complemental strand, 22512448 - 22512377
Alignment:
Q  40 catgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggag 111  Q
    |||||||||||  |||||| ||| |||||||||| |||||||||| |||||||||||||||||||| |||||    
T  22512448 catgggaagcttcttatcagaataagaactcggggtcgagttctttagaggtggaggagactgatgcaggag 22512377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 113
Target Start/End: Original strand, 26377776 - 26377834
Alignment:
Q  55 atcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 113  Q
    |||| |||||||||| ||| |||||||||||| ||||||||||||||||||||||||||    
T  26377776 atcagaatgagaacttggggtcgagttcttcaaaggtggaggagactgatgtaggaggg 26377834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 107
Target Start/End: Complemental strand, 24577905 - 24577811
Alignment:
Q  13 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgta 107  Q
    |||||||| |||||||||||  | ||||| | |||| ||| ||||| || ||||||||  | |||| ||||||||| ||||||||||||||||||    
T  24577905 ctcttgtttattggaggagtaaatatgcaagcgaagttctgtatcagaaggagaactcaaggtcgaattcttcagaagtggaggagactgatgta 24577811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 113
Target Start/End: Original strand, 18203147 - 18203246
Alignment:
Q  13 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggagg 112  Q
    |||||||||||| |||||||| |||||||||| || |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18203147 ctcttgttcattcgaggagtcaacatgcatggaaaactctttattaaaatgagaactcggg-tcgagttcttcagaggtggaggagactgatgtaggagg 18203245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 13 - 113
Target Start/End: Original strand, 22873522 - 22873622
Alignment:
Q  13 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggagg 112  Q
    ||||||||||||||||||||| | |||||||||||||||||||||| |||||||||| |||||||| ||| | ||||||||| |||||||||||||||||    
T  22873522 ctcttgttcattggaggagtcaatatgcatgggaagctctttatcataatgagaacttgggatcgatttccttagaggtggatgagactgatgtaggagg 22873621  T
Q  113 g 113  Q
    |    
T  22873622 g 22873622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 34374162 - 34374062
Alignment:
Q  13 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggagg 112  Q
    ||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||| | |||||||||||| |||||||||||| ||||| ||||    
T  34374162 ctcttgttcattggaagagtcaacatgcatgggaatctctttatcaaaatgagaactcggggtggagttcttcagatgtggaggagactaatgtaagagg 34374063  T
Q  113 g 113  Q
    |    
T  34374062 g 34374062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 13 - 113
Target Start/End: Original strand, 22888965 - 22889065
Alignment:
Q  13 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggagg 112  Q
    ||||||||||||||||||||| | |||||||||||||||||||||| |||||||||| ||| || | ||| | ||||||||| |||||||||||||||||    
T  22888965 ctcttgttcattggaggagtcaatatgcatgggaagctctttatcataatgagaacttggggtctatttccttagaggtggatgagactgatgtaggagg 22889064  T
Q  113 g 113  Q
    |    
T  22889065 g 22889065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 113
Target Start/End: Original strand, 22910508 - 22910608
Alignment:
Q  13 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggagg 112  Q
    ||||||||||||||||||||| | || ||||||||||||||||||| |||||||||| ||| || | ||| | ||||||||| |||||||||||||||||    
T  22910508 ctcttgttcattggaggagtcaatatacatgggaagctctttatcataatgagaacttggggtctatttccttagaggtggatgagactgatgtaggagg 22910607  T
Q  113 g 113  Q
    |    
T  22910608 g 22910608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 51 - 113
Target Start/End: Original strand, 3541947 - 3542009
Alignment:
Q  51 ctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 113  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3541947 ctttatcaagatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggaggg 3542009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 51 - 113
Target Start/End: Original strand, 30049617 - 30049679
Alignment:
Q  51 ctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 113  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30049617 ctttatcaagatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggaggg 30049679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 51 - 113
Target Start/End: Original strand, 30051904 - 30051966
Alignment:
Q  51 ctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 113  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30051904 ctttatcaagatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggaggg 30051966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 13 - 113
Target Start/End: Original strand, 12881735 - 12881834
Alignment:
Q  13 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggagg 112  Q
    ||||||||||||| || |||| |||||||||||||| |||| |||  ||||||| |||||| |||||||||||  |||||||||||||||||||||||||    
T  12881735 ctcttgttcattgaagaagtcaacatgcatgggaagttctt-atcggaatgagagctcggggtcgagttcttcttaggtggaggagactgatgtaggagg 12881833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 12778782 - 12778684
Alignment:
Q  13 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggagg 112  Q
    ||||||||||||||||||||| |||||||  |||| ||||  |||| |||||||| | ||| || |||||||||||||||||||||||||||||| ||||    
T  12778782 ctcttgttcattggaggagtcaacatgcaaaggaaactct--atcagaatgagaatttggggtcaagttcttcagaggtggaggagactgatgtaagagg 12778685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 102
Target Start/End: Original strand, 18720019 - 18720069
Alignment:
Q  52 tttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactg 102  Q
    ||||||||||| |||| ||||| |||||||||||| |||||||||||||||    
T  18720019 tttatcaaaattagaattcggggtcgagttcttcaaaggtggaggagactg 18720069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 113
Target Start/End: Original strand, 32361109 - 32361169
Alignment:
Q  53 ttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 113  Q
    |||||| |||||||||||| | ||||||| || |||||||||| ||||| |||||||||||    
T  32361109 ttatcataatgagaactcgaggtcgagttttttagaggtggagaagactaatgtaggaggg 32361169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 105
Target Start/End: Complemental strand, 8047718 - 8047663
Alignment:
Q  50 tctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatg 105  Q
    ||||||| | ||| |||||||||| || ||||||||||||||||||||||| ||||    
T  8047718 tctttattagaattagaactcggggtcaagttcttcagaggtggaggagaccgatg 8047663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 111
Target Start/End: Original strand, 11194398 - 11194426
Alignment:
Q  83 ttcagaggtggaggagactgatgtaggag 111  Q
    |||||||||||||||||||||||||||||    
T  11194398 ttcagaggtggaggagactgatgtaggag 11194426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 22716324 - 22716416
Alignment:
Q  13 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatg 105  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||    
T  22716324 ctcttgttcattggaggagtcaacatgaatgggaagctctttatcaaaatgagaactcggggtcgagttctttagagctggaggagactgatg 22716416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 22988893 - 22988801
Alignment:
Q  13 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatg 105  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||    
T  22988893 ctcttgttcattggaggagtcaacatgaatgggaagctctttatcaaaatgagaactcggggtcgagttctttagagctggaggagactgatg 22988801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 6659751 - 6659656
Alignment:
Q  17 tgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 113  Q
    ||||| ||||||||||| | || |||||||||||||||||||| ||||||| | ||| ||||||||||||||||| |||||||||||||||||||||    
T  6659751 tgttctttggaggagtcaatattcatgggaagctctttatcaagatgagaatttggg-tcgagttcttcagaggtagaggagactgatgtaggaggg 6659656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 113
Target Start/End: Original strand, 10494634 - 10494734
Alignment:
Q  13 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggagg 112  Q
    |||||||||||||||||||||||||||||||||||||| |||||||  || |||||| | | |||||||||||||| || ||| ||||||||||| ||||    
T  10494634 ctcttgttcattggaggagtcgacatgcatgggaagctatttatcaggatcagaacttgaggtcgagttcttcagaagtagagaagactgatgtatgagg 10494733  T
Q  113 g 113  Q
    |    
T  10494734 g 10494734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 7635000 - 7635098
Alignment:
Q  13 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggag 111  Q
    ||||||||||| ||||||||| ||||||||||| |||| ||||| | |||||||| | ||| ||||||||||||||| |||||||||||||||| ||||    
T  7635000 ctcttgttcatcggaggagtcaacatgcatggggagctttttattagaatgagaatttggggtcgagttcttcagagatggaggagactgatgtgggag 7635098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 51 - 113
Target Start/End: Complemental strand, 13085483 - 13085421
Alignment:
Q  51 ctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 113  Q
    ||||||||| ||||||||||||| ||||||||||||||| |||| ||||||||||||||||||    
T  13085483 ctttatcaagatgagaactcggggtcgagttcttcagagatggaagagactgatgtaggaggg 13085421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 35 - 105
Target Start/End: Original strand, 9260297 - 9260367
Alignment:
Q  35 acatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatg 105  Q
    |||| |||| |||| ||||||||||||| |||||||||| |||||||||| ||| || ||||||| |||||    
T  9260297 acatccatgagaagttctttatcaaaataagaactcggggtcgagttctttagacgtagaggagattgatg 9260367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 6e-33; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 21845316 - 21845225
Alignment:
Q  14 tcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatg 105  Q
    |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||  |||||||||    
T  21845316 tcttgttcattggaggagtcaacatgcatgggaagctctttatcagaatgagaactcggggtcgagttcttcagaggtggaacagactgatg 21845225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 13 - 113
Target Start/End: Original strand, 18252130 - 18252230
Alignment:
Q  13 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggagg 112  Q
    ||||||| ||||||||||||| |||||||||| ||||| ||||||| |||||||||||||| || |||||||||||||| |||||| |||||| ||||||    
T  18252130 ctcttgtccattggaggagtccacatgcatggaaagctgtttatcataatgagaactcggggtcaagttcttcagaggtagaggaggctgatgcaggagg 18252229  T
Q  113 g 113  Q
    |    
T  18252230 g 18252230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 51 - 106
Target Start/End: Complemental strand, 19677684 - 19677629
Alignment:
Q  51 ctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgt 106  Q
    |||||| || ||||||||||||| ||||||||||||||||||||||||||||||||    
T  19677684 ctttataaagatgagaactcggggtcgagttcttcagaggtggaggagactgatgt 19677629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 13 - 113
Target Start/End: Original strand, 10361 - 10461
Alignment:
Q  13 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggagg 112  Q
    ||||||||||||||||||||| | || ||||||||||||||||||| |||||||||| ||| || | ||| | ||||||||| |||||||||||||||||    
T  10361 ctcttgttcattggaggagtcaatattcatgggaagctctttatcataatgagaacttggggtctatttccttagaggtggatgagactgatgtaggagg 10460  T
Q  113 g 113  Q
    |    
T  10461 g 10461  T

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Target: scaffold0054; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 49012 - 49122
Alignment:
Q  1 cgggtgggtgtgctcttgttcattggaggagtcgacatgcatgggaagctcttt-atcaaaatgagaactcgggatcgagttcttcagaggtggaggaga 99  Q
    ||||||||||| ||| ||||||| ||| ||||| |||||||||| ||| ||||| |||| ||| |||||||||| | |||||||||||||||||||||||    
T  49012 cgggtgggtgttctcgtgttcataggaagagtcaacatgcatgg-aagttcttttatcagaataagaactcggggttgagttcttcagaggtggaggaga 49110  T
Q  100 ctgatgtaggag 111  Q
    ||||||||||||    
T  49111 ctgatgtaggag 49122  T

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Target: scaffold0054; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 37431 - 37523
Alignment:
Q  18 gttcattggaggagtcgacatgcatgggaagctcttt-atcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggag 111  Q
    |||||| ||| ||||| |||||||||| ||||||||| |||| ||| |||| | ||| |||||||||||||||||||||||||||||||||||||    
T  37431 gttcataggaagagtcaacatgcatgg-aagctcttttatcagaataagaatttggg-tcgagttcttcagaggtggaggagactgatgtaggag 37523  T

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Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 365973 - 365879
Alignment:
Q  17 tgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggagg 112  Q
    ||||||||||| ||||| |||| ||||| |||||||||||||||| ||||||||| | ||||||||||||||||||||||||| ||||| ||||||    
T  365973 tgttcattggaagagtcaacatacatgg-aagctctttatcaaaacgagaactcgaggtcgagttcttcagaggtggaggagattgatgcaggagg 365879  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 8536758 - 8536658
Alignment:
Q  13 ctcttgttcattggaggagtcgacatgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggagg 112  Q
    ||||||||||||||| ||||| ||||  ||| ||| || ||||||| ||| |||||||||  |||||||||| ||||||||| ||| |||||||||||||    
T  8536758 ctcttgttcattggaagagtcaacatatatgagaaactttttatcagaataagaactcggagtcgagttctttagaggtggaagaggctgatgtaggagg 8536659  T
Q  113 g 113  Q
    |    
T  8536658 g 8536658  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 3064116 - 3064066
Alignment:
Q  63 gagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 113  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||||||    
T  3064116 gagaactcggggtcgagttcttcagaggtggaggagactgatgcaggaggg 3064066  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 2473084 - 2473000
Alignment:
Q  15 cttgttcattggaggagtcgacatgcatgggaagctcttt--atcaaaatgagaactcgggatcgagttcttcagaggtggagga 97  Q
    |||||||||||||| |||| ||||||||| |||| | |||  |||| |||||||||||||| |||||||||| | | ||||||||    
T  2473084 cttgttcattggagaagtcaacatgcatgagaagttttttttatcagaatgagaactcggggtcgagttctttaaaagtggagga 2473000  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 24516743 - 24516698
Alignment:
Q  65 gaactcgggatcgagttcttcagaggtggaggagactgatgtagga 110  Q
    ||||||||| ||||||||||| || |||||||||| ||||||||||    
T  24516743 gaactcggggtcgagttcttctgaagtggaggagattgatgtagga 24516698  T

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Target: scaffold0110 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 51 - 113
Target Start/End: Complemental strand, 46005 - 45943
Alignment:
Q  51 ctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggaggg 113  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  46005 ctttatcaagatgagaactcggggtcgagttcttcagaggtggaggagactgatgtaggaggg 45943  T

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Target: scaffold0024 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 113
Target Start/End: Original strand, 145444 - 145544
Alignment:
Q  13 ctcttgttcattggaggagtcgaca-tgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggagactgatgtaggag 111  Q
    ||||||||||||| ||||||| ||| || | ||  | |||||||||| ||| | |||||||| || |||||||| |||||||||||||||||||||||||    
T  145444 ctcttgttcattgaaggagtcaacaatgaacggacaactctttatcagaataataactcggg-tcaagttcttctgaggtggaggagactgatgtaggag 145542  T
Q  112 gg 113  Q
    ||    
T  145543 gg 145544  T

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Target: scaffold0024; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 144282 - 144179
Alignment:
Q  13 ctcttgttcattggaggagtcgaca-tgcatgggaagctctttatcaaaatgagaactcgggatcgagttcttcagaggtggaggag---actgatgtag 108  Q
    ||||||||||| | ||||||||||| || ||||  | |||||||||| ||| |||||||||| || |||||||||||| ||||||||   ||||||| ||    
T  144282 ctcttgttcatcgaaggagtcgacaatgaatggacaactctttatcagaataagaactcggg-tcaagttcttcagagatggaggaggagactgatgcag 144184  T
Q  109 gaggg 113  Q
    |||||    
T  144183 gaggg 144179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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