View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1944_low_68 (Length: 210)
Name: NF1944_low_68
Description: NF1944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1944_low_68 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 8e-94; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 12169773 - 12169950
Alignment:
| Q |
17 |
aaatataaatataattttcatagtatgcaacaatttaaacaatcaaaatttatattaagttttttgttatagaaattgaattgaatgagaaacaaattaa |
116 |
Q |
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| T |
12169773 |
aaatataaatataattttcatagtatgcaacaatttaaacaatcaaaatttatattaagttttttgttatagaaattgaattgaatgagaaacaaattaa |
12169872 |
T |
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| Q |
117 |
tggagggacccaaatcacactatcatgtgatagtgatgcatctcacaatgaatggaccataacaacattgctgatatt |
194 |
Q |
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| T |
12169873 |
tggagggacccaaatcacactatcatgtgatagtgatgcatctcacaatgaattgaccataacaacattgctgatatt |
12169950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 12414201 - 12414378
Alignment:
| Q |
17 |
aaatataaatataattttcatagtatgcaacaatttaaacaatcaaaatttatattaagttttttgttatagaaattgaattgaatgagaaacaaattaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12414201 |
aaatataaatataattttcatagtatgcaacaatttaaacaatcaaaatttatattaagttttttgttatagaaattgaattgaatgagaaacaaattaa |
12414300 |
T |
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| Q |
117 |
tggagggacccaaatcacactatcatgtgatagtgatgcatctcacaatgaatggaccataacaacattgctgatatt |
194 |
Q |
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| T |
12414301 |
tggagggacccaaatcacactatcatgtgatagtgatgcatctcacaatgaattgaccataacaacattgctgatatt |
12414378 |
T |
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