View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1944_low_9 (Length: 483)
Name: NF1944_low_9
Description: NF1944
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1944_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 62 - 476
Target Start/End: Complemental strand, 30505406 - 30505000
Alignment:
| Q |
62 |
tatccctcttaaccattattattagcctgaatattgaaatgttaatttttatttgaaataaaaatgatagagatcggatgaatgtgatttggttagcata |
161 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||| |||||||| |
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| T |
30505406 |
tatccctcttaaccattattattagcctgaataatgaaatgttaatttttatttgaaattaaaatgatagagaa-ggattaatgtgatttgattagcata |
30505308 |
T |
|
| Q |
162 |
aatggccacatcttctcctactaaaatgttacttcaacaaaattaacaacttctttcttctttttcatgttgctgaagtctaaaggtaaaccacttttga |
261 |
Q |
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|||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
30505307 |
aatggctacatcttctcctacaaaaatgttacttcaacaaaa----caacttctttcttctttttcatgttgctgaagtctaaaggtaaaccacttctga |
30505212 |
T |
|
| Q |
262 |
tcatgttattcaatgaaaataaaatgtaaacttattagagttataagactcatcagaaattaagacaagaaatagttgagagcttatattgtatgtaata |
361 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
30505211 |
tcatgttattcaatgaaaataaaatgtaaacttattggagttataagactcatcagaaattaagacaagaaat---tgagagcttatattgtatgcaata |
30505115 |
T |
|
| Q |
362 |
tacctggcagtttctctggatgagtatagcagattccattttctccttcaagagtagggatgaactcatcaattagagggtgaagcttatgaatatctga |
461 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30505114 |
tacctggcagtttctctggatgagtatagcagattccattttctccttcaagagtagggatgaactcatcaattagagggtgaagcttatgaatatctga |
30505015 |
T |
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| Q |
462 |
ctttgcctttgcttc |
476 |
Q |
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| T |
30505014 |
ctttgcctttgcttc |
30505000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 394 - 458
Target Start/End: Complemental strand, 30512713 - 30512649
Alignment:
| Q |
394 |
attccattttctccttcaagagtagggatgaactcatcaattagagggtgaagcttatgaatatc |
458 |
Q |
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| T |
30512713 |
attccattctatccttcaagagttgggatgaactcgtcaattagagggtgaagcttatgaatatc |
30512649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 363 - 446
Target Start/End: Original strand, 34832254 - 34832337
Alignment:
| Q |
363 |
acctggcagtttctctggatgagtatagcagattccattttctccttcaagagtagggatgaactcatcaattagagggtgaag |
446 |
Q |
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|||||| || || |||||||| ||||| |||||||| || ||||||||||| || || |||||||||||||| ||||| ||||| |
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| T |
34832254 |
acctggtagcttttctggatgtgtataacagattccgttctctccttcaagtgttggtatgaactcatcaataagaggatgaag |
34832337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 373 - 458
Target Start/End: Complemental strand, 38886696 - 38886611
Alignment:
| Q |
373 |
ttctctggatgagtatagcagattccattttctccttcaagagtagggatgaactcatcaattagagggtgaagcttatgaatatc |
458 |
Q |
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||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||| ||| |||||| | |||||||| |
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| T |
38886696 |
ttctctggatgagtacagcagattccattctctccttcaagagtagggatgaattcatcaattaaaggatgaagcatttgaatatc |
38886611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 363 - 446
Target Start/End: Original strand, 28950946 - 28951029
Alignment:
| Q |
363 |
acctggcagtttctctggatgagtatagcagattccattttctccttcaagagtagggatgaactcatcaattagagggtgaag |
446 |
Q |
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|||||| || || |||||||| ||||| |||||||| || ||||||||||| || || |||||||||||||| ||||| ||||| |
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| T |
28950946 |
acctggtagcttttctggatgtgtataacagattccgttctctccttcaagtgttggtatgaactcatcaataagaggatgaag |
28951029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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