View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19450_high_5 (Length: 439)
Name: NF19450_high_5
Description: NF19450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19450_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 13 - 423
Target Start/End: Complemental strand, 30342749 - 30342339
Alignment:
| Q |
13 |
aaaatggaatttttggatttaagtttcaatctttttggtaattttggtgtcccattgttcttaggagaaatccccggattgaaagaagtttatttaagtg |
112 |
Q |
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| T |
30342749 |
aaaatggaatttttggatttaagtttcaatctttatggtaattttggtgtccctttgttcttaggagaaatccccggattgaaagaagtttatttaagtg |
30342650 |
T |
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| Q |
113 |
ggaatttactttctggtaaaattccagaaatatggaaaaatcttggtgctgttgaaaaaattggattttctaaaatggggttggttggtaaaattccagt |
212 |
Q |
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| T |
30342649 |
ggaatttactttctggtaaaattccagaaatatggaaaaatcttggtgctgttgaaaaaattggattttctaaaatggggttggttggtaaaattccagt |
30342550 |
T |
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| Q |
213 |
ttcaatgggggtttatttgaagaatttatcttatcttggacttgataacaataagcttgatgggtctgttcctaaggaatttgggcttttggaatttgct |
312 |
Q |
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| T |
30342549 |
ttcaatgggggtttatttgaagaatttatcttatcttggacttgataacaataagcttgatgggtctgttcctaaggaatttgggcttttggaatttgct |
30342450 |
T |
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| Q |
313 |
aatgagatcaatttggagaacaacaatttgagtggtagaatcactttctcaactagagttggacagaagttaaagttggcaggaaatgtagggctgtgtt |
412 |
Q |
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| T |
30342449 |
aatgagatcaatttggagaacaacaatttgagtggtagaatcactttctcaactagagttggacagaagttaaagttggcaggaaatgtagggctgtgtt |
30342350 |
T |
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| Q |
413 |
tgggaaacaat |
423 |
Q |
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| T |
30342349 |
tgggaaacaat |
30342339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 312 - 399
Target Start/End: Original strand, 30333362 - 30333449
Alignment:
| Q |
312 |
taatgagatcaatttggagaacaacaatttgagtggtagaatcactttctcaactagagttggacagaagttaaagttggcaggaaat |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||| ||||||||||||||| |
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| T |
30333362 |
taatgagatcaatttggagaacaacaatttgagtggtataatcactttctcagccagagttggacagaagttgaagttggcaggaaat |
30333449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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