View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19450_high_7 (Length: 407)
Name: NF19450_high_7
Description: NF19450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19450_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 17 - 393
Target Start/End: Original strand, 30646848 - 30647224
Alignment:
| Q |
17 |
caaaccggacacgaattatgcagtgcaagccaaggtaaaatacaatcaggatgataaatatgcttacaaggcatttctctaacaacagtacctaactcaa |
116 |
Q |
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| T |
30646848 |
caaaccggacacgaattatgcagtgcaagccaaggtaaaatacaatcaggatgataaatatgcttacaaggcatttctctaacaacagtacctaactcaa |
30646947 |
T |
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| Q |
117 |
aagcttccatacaaacagcacaatgtgattccatttccaaatgagtattatcaatttcaagagttggtaatgaatcaacagaagcttttgatgctggtgg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30646948 |
aagcttccatacaaacagcacaatgtgattccatttccaaatgagtattatcaatttcaagagttggtaatgaatcaacagaagcttttgatgctggtgg |
30647047 |
T |
|
| Q |
217 |
atgttcatatcttccaataccattgatctcaatctgtgaaagctgttccaataatctatcaaaaccagatccaagcaaaaactctgacatactcggtggt |
316 |
Q |
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| T |
30647048 |
atgttcatatcttccaataccattgatctcaatctgtgaaagctgttccaataatctatcaaaaccagatccaagcaaaaactctgacatacttggtggt |
30647147 |
T |
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| Q |
317 |
aatggtcttaaaccagaaccagcaccatcatcataaaataactcaaacccacggctctctcctctttctcctccacc |
393 |
Q |
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| T |
30647148 |
aatggtcttaaaccagaaccagcaccatcatcataaaataactcaaacccacggctctctcctctttctcctccacc |
30647224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 229 - 300
Target Start/End: Original strand, 24097826 - 24097897
Alignment:
| Q |
229 |
tccaataccattgatctcaatctgtgaaagctgttccaataatctatcaaaaccagatccaagcaaaaactc |
300 |
Q |
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| T |
24097826 |
tccaaaaccattcatctcgatctgagaaaactgctccaacaaccgatcaaatccagatccaagcaaaaactc |
24097897 |
T |
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