View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19450_low_1 (Length: 847)
Name: NF19450_low_1
Description: NF19450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19450_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 413; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 19 - 515
Target Start/End: Original strand, 475608 - 476119
Alignment:
| Q |
19 |
atgtcgtgctttggggtaaagcggaagatgtagtccatgtcaaacagaagatagatccaaaatctatggttactcagacagaggaagtgaaaattttgat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
475608 |
atgtcgtgctttggggtaaagcggaagatgtagtccatgtcaaacagaagatagatccaaaatctatggttactcagacagaggaagtgaaaattttgat |
475707 |
T |
|
| Q |
119 |
aaccgatttgaaagaaactcttttagcagatgaatctacattacaacgttgattgaaaaaggaatcaatgaatgtcattccataatt------------- |
205 |
Q |
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| T |
475708 |
aaccgatttgaaagaaactcttttagcagatgaatctacattacaacgttgattgaaaaaggaatcaatgaatgtcattccataattttttagcttaatt |
475807 |
T |
|
| Q |
206 |
aaaattaatgtcatcatcactgtatcnnnnnnnnnnnngctttccatgatatagctgaagagaataacagttgaagttacttttttactctttgtcattt |
305 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
475808 |
aaaattaatgtcatcatcactgtatcttttttatgtttgctttccatgatatagctgaagagaataacagttgaagttacttttttactctttgtcattt |
475907 |
T |
|
| Q |
306 |
atgtattcatttattgtgagagaaatacaaaattaagagcataa--aatggttaattatgagacaaatgaaatttttaaaatgaatcttcaagaaaggta |
403 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
475908 |
atgtattcatttattgtgagagaaatacaaacttaagagcataatcaatggttaattatgagacaaatgaaatttttaaaatgaatcttcaagaaaggta |
476007 |
T |
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| Q |
404 |
aattataaaatttttagctgatgaatatatattacactgttgattgaaaaaactgtgttaaatttaaagaatgaaaaattgtatcaatttctctatacaa |
503 |
Q |
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| T |
476008 |
aattataaattttttagctgatgaatatatattacactgttgattgaaaaaactgtgttaaatttaaagaatgaaaaattgtatcaatttctctatacaa |
476107 |
T |
|
| Q |
504 |
taggctacactc |
515 |
Q |
| |
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|||||||||||| |
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| T |
476108 |
taggctacactc |
476119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 509 - 846
Target Start/End: Original strand, 476144 - 476481
Alignment:
| Q |
509 |
tacactcttcactaataaactagcttcatcttttacaccactcttagtctatgttgatgatagagtgagttctcacaggaaacaatttagtggggaattt |
608 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
476144 |
tacactcttcactaataaactagcttcatcttttacaccactcttagtctatgttgatgatagagtgagttctcacaggaaacaatttagtggggaattt |
476243 |
T |
|
| Q |
609 |
gaagcaaccaaaggaaaatttcaagatgattttgagatcaaggactttggatttttaaaattcttcctaggaacagaaactgtacattcagaacaagata |
708 |
Q |
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| T |
476244 |
gaagcaaccaaaggaaaatttcaagatgattttgagatcaaggactttggatttttaaaattcttcctaggaacagaaactgtacattcagaacaagata |
476343 |
T |
|
| Q |
709 |
tcactttgtgtcaaagacagtattttctatatttattaactaagacaaataacttggtcttcaagccatccagttttcccaatagatcctattcaaggat |
808 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
476344 |
tcactttgtgtcaaagacagtattttctatatttattaactaagacaaataacttggtcttcaagccatccagttttcccaatagatcctattcaaggat |
476443 |
T |
|
| Q |
809 |
tacacaatgatgatactgaagaatatattgagcctttg |
846 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
476444 |
tacacaatgatgatactgaagaatatattgagcctttg |
476481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 27 - 113
Target Start/End: Original strand, 449659 - 449745
Alignment:
| Q |
27 |
ctttggggtaaagcggaagatgtagtccatgtcaaacagaagatagatccaaaatctatggttactcagacagaggaagtgaaaatt |
113 |
Q |
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|||||||||||||| ||||| ||||| |||| ||| ||||||||| ||||||||||||||||| | |||||||||||||||||||| |
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| T |
449659 |
ctttggggtaaagctgaagaagtagttgatgttaaagagaagatagttccaaaatctatggttaatgagacagaggaagtgaaaatt |
449745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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