View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19450_low_10 (Length: 351)
Name: NF19450_low_10
Description: NF19450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19450_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 133; Significance: 4e-69; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 27 - 176
Target Start/End: Complemental strand, 48345805 - 48345654
Alignment:
| Q |
27 |
taatgttgttggcagttagcgcaagataccaaaatcacctcaagtttaattagaattagaattcatacttacaaaataacaaga--aacaacagtgaaga |
124 |
Q |
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| T |
48345805 |
taatgttgttggcagttagcacaagataccaaaatcacctcaagtttaattagaattagaattcatacttacaaaataataagaacaacaacagtgaaga |
48345706 |
T |
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| Q |
125 |
aattaataaaatgattatataacctgtatagttaattatcatatggttctac |
176 |
Q |
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| T |
48345705 |
aattaataaaatgattatataacctgtatagttaattatcatatggttctac |
48345654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 202 - 336
Target Start/End: Complemental strand, 48345635 - 48345501
Alignment:
| Q |
202 |
cattatacgaatagcacgattagtactaacatgagtagtttcaaacacaggtaaatcttcacaatacctatcatttcccatcacatccaagtgatcaagc |
301 |
Q |
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|||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48345635 |
cattatgcgaatagcacgattagtactaacatgagtagtctcaaacacaggtaaatcttcacaatacctatcatttcccatcacatccaagtgatcaagc |
48345536 |
T |
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| Q |
302 |
tcaaaaagatctgaacttgaacaacttgatacatc |
336 |
Q |
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| T |
48345535 |
tcaaaaagatctgaacttgaacaacttgatacatc |
48345501 |
T |
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