View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19450_low_12 (Length: 338)
Name: NF19450_low_12
Description: NF19450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19450_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 17 - 331
Target Start/End: Complemental strand, 11316123 - 11315809
Alignment:
| Q |
17 |
agaaagggtgtacatgaaatattatcctatttaattagacacaaatatggaagatattaagccagtgatgtcatttgttgcagctatatacactacctgg |
116 |
Q |
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| T |
11316123 |
agaaagtgtctacatgaaacactatcctatttaattagacacaaatatggaagatattaagccagtgatgtcatttgttgcagctatatacactacctgg |
11316024 |
T |
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| Q |
117 |
aaagtatattttagtaataacggtaaccaatgattctttttcttgttttcttgcacaccatgctcctcatcctttatcttcttcacaataattccatcaa |
216 |
Q |
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| T |
11316023 |
aaagtatattttagtaataacggtaaccaatgattctttttcttgttttcttgcacaccatgctcctcatcctttatcttcttcacaataattccatcaa |
11315924 |
T |
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| Q |
217 |
acacacttgaaagcattctcctatgttcctcaatttcatgttgttttgcatcctcatgattaacacgaagccagagtaaagtcaaaccaattgcatcatt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11315923 |
acacacttgaaagcattctcctatgttcctcaatttcatgttgttttgcatcctcatgattaacacgaagccagagtaaagtcaaaccaattgcatcatt |
11315824 |
T |
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| Q |
317 |
gatctttttcttttc |
331 |
Q |
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| T |
11315823 |
gatctttttcttttc |
11315809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 164 - 240
Target Start/End: Original strand, 11208308 - 11208384
Alignment:
| Q |
164 |
ttcttgcacaccatgctcctcatcctttatcttcttcacaataattccatcaaacacacttgaaagcattctcctat |
240 |
Q |
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| T |
11208308 |
ttcttccacaccatgcccctcatcctttatcatcttcaaaataattggatcaaacacacttgaaagaatgctcctat |
11208384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 11155208 - 11155272
Alignment:
| Q |
165 |
tcttgcacaccatgctcctcatcctttatcttcttcacaataattccatcaaacacacttgaaag |
229 |
Q |
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| T |
11155208 |
tcttgcacaccatgcctctcatcatttatcttcttcactataactgcatcaaatacacttgaaag |
11155272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 11195655 - 11195719
Alignment:
| Q |
165 |
tcttgcacaccatgctcctcatcctttatcttcttcacaataattccatcaaacacacttgaaag |
229 |
Q |
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| T |
11195655 |
tcttgcacaccatgcctctcatcatttatcttcttcactataactgcatcaaatacacttgaaag |
11195719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 11274872 - 11274946
Alignment:
| Q |
166 |
cttgcacaccatgctcctcatcctttatcttcttcacaataattccatcaaacacacttgaaagcattctcctat |
240 |
Q |
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| T |
11274872 |
cttgcacaccatgtccctcatcctttatcatctttataacaattggatcaaacacacttgaaagaatgctcctat |
11274946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 240
Target Start/End: Complemental strand, 11242246 - 11242178
Alignment:
| Q |
172 |
caccatgctcctcatcctttatcttcttcacaataattccatcaaacacacttgaaagcattctcctat |
240 |
Q |
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| T |
11242246 |
caccatgcccctcatctttgatcatcatcacaataattttatcaaacacacttgaaagaatgctcctat |
11242178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 229
Target Start/End: Original strand, 11169486 - 11169551
Alignment:
| Q |
164 |
ttcttgcacaccatgctcctcatcctttatcttcttcacaataattccatcaaacacacttgaaag |
229 |
Q |
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||||||||||| ||| |||||||||||||| |||| | || |||| |||||||||||||||||| |
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| T |
11169486 |
ttcttgcacacaatgtccctcatcctttatcatctttataacaattggatcaaacacacttgaaag |
11169551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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