View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19450_low_13 (Length: 323)
Name: NF19450_low_13
Description: NF19450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19450_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 3 - 309
Target Start/End: Complemental strand, 26770144 - 26769836
Alignment:
| Q |
3 |
caaaggttgttgagattctcaatagaattcaaaaggtcatgaacaacaatatcatgactcataggtcaataaatattgggtttacgagaattcattttac |
102 |
Q |
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| T |
26770144 |
caaagattgttgatattctcaatagagttcaaaagatcatgcacaacaatatcatgactcttaggtccataaatattgggtttacgatgattcattttac |
26770045 |
T |
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| Q |
103 |
ttcaaaaaattaacttataatcaaaggattcattttattatccaaaaatgtctaacgacataacttat--tgcatatttaccttctattcatgtatgatt |
200 |
Q |
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| T |
26770044 |
tccaaaaaattaacttataatcaaaggattcattttactatccaaaaatgtctaacgacatagcttgttgtgtatatttaccttctatttatgtataatt |
26769945 |
T |
|
| Q |
201 |
aatcattgatatatacaagcaagtaagtatgaatatatgcgaactattttaattgtttctagagatagagaaacaaggaaaattttcgatcatgactatg |
300 |
Q |
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| T |
26769944 |
aattattgatatatacaaacaagtgagtatgaatatatgcgaactattttaattgtttttagagatagagaaataaggaaaaattccgatcatgactatg |
26769845 |
T |
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| Q |
301 |
gttgagatt |
309 |
Q |
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||||||||| |
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| T |
26769844 |
gttgagatt |
26769836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 100
Target Start/End: Complemental strand, 43856894 - 43856800
Alignment:
| Q |
6 |
aggttgttgagattctcaatagaattcaaaaggtcatgaacaacaatatcatgactcataggtcaataaatattgggtttacgagaattcatttt |
100 |
Q |
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| T |
43856894 |
aggttgttgaccttctacatagagttcaaagggtcatgcacaacaatgtcatgactcctaggtccatgaatgttatgtttacgagaattgatttt |
43856800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 208
Target Start/End: Original strand, 5329787 - 5329853
Alignment:
| Q |
142 |
atccaaaaatgtctaacgacataacttattgcatatttaccttctattcatgtatgattaatcattg |
208 |
Q |
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| T |
5329787 |
atccaaaaaggcctaacgacacaacttatttcacatttgccttctattcatgtgtaattaatcattg |
5329853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 3262247 - 3262323
Alignment:
| Q |
24 |
atagaattcaaaaggtcatgaacaacaatatcatgactcataggtcaataaatattgggtttacgagaattcatttt |
100 |
Q |
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| T |
3262247 |
atagagttcaaagggtcttgcacatcagtgtcatgactcataggtccataaatattatgtttacgagaattgatttt |
3262323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 100
Target Start/End: Complemental strand, 17344640 - 17344564
Alignment:
| Q |
24 |
atagaattcaaaaggtcatgaacaacaatatcatgactcataggtcaataaatattgggtttacgagaattcatttt |
100 |
Q |
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| T |
17344640 |
atagagttcaaaaggtcatgcataacaatgtcatgtctcctaggtccatgaatgttgtgtttacgaggattgatttt |
17344564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 215
Target Start/End: Complemental strand, 53098358 - 53098270
Alignment:
| Q |
127 |
aggattcattttattatccaaaaatgtctaacgacataacttattgcatatttaccttctattcatgtatgattaatcattgatatata |
215 |
Q |
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|||||| |||||| ||||||||||| || || |||| |||||||||| ||| ||||||||||||| | |||||| |||||||||| |
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| T |
53098358 |
aggattgattttacaatccaaaaatgcctcgcggcatagcttattgcatgtttgtcttctattcatgtgtaattaattcttgatatata |
53098270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 25376009 - 25376081
Alignment:
| Q |
135 |
ttttattatccaaaaatgtctaacgacataacttattgcatatttaccttctattcatgtatgattaatcatt |
207 |
Q |
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||||| |||||||||| | |||||||| |||||| ||| | ||| |||||||||||||| | |||||||||| |
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| T |
25376009 |
ttttactatccaaaaaggcctaacgacgtaacttgttgtttgtttgccttctattcatgtgtaattaatcatt |
25376081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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