View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19450_low_2 (Length: 583)
Name: NF19450_low_2
Description: NF19450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19450_low_2 |
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| [»] scaffold0565 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 4e-89; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 12 - 182
Target Start/End: Original strand, 1088775 - 1088945
Alignment:
| Q |
12 |
atcatcaccaaagtattgttccccattttgattagttccaatggttttcgccttggttcaaatttttattatatacttagctctcaaatggttagaaata |
111 |
Q |
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| T |
1088775 |
atcatcaccaaagtattgttccccattttgattagttccaatggttttcgccttggttcaaatttttattatatacttagctctcaaatggttagaaata |
1088874 |
T |
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| Q |
112 |
taattttattttgatcaaatttattgtgttttgcactgtgttttgaaatgtatatacatattttcacctct |
182 |
Q |
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| T |
1088875 |
taattttattttgatcaaatttattgtgttttgcattgtgttttgaaatgtatatacatattttcacctct |
1088945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 72 - 226
Target Start/End: Original strand, 1085506 - 1085648
Alignment:
| Q |
72 |
aatttttattatatacttagctctcaaatggttagaaatataattttattttgatcaaatttattgtgttttgcactgtgttttgaaatgtatatacata |
171 |
Q |
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| T |
1085506 |
aatttttattatatacttggctttcaaatggttaggaatataattttattttgatttaattta------------ctgtgtcttgaaatgtatttgcata |
1085593 |
T |
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| Q |
172 |
ttttcacctctggattcagcctaagttaatcaagaaattttattgcacatgaagg |
226 |
Q |
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| T |
1085594 |
tttccacctcaggattcagcctgagttaatcaagaaattttattgcacatgaagg |
1085648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 375 - 431
Target Start/End: Original strand, 1081762 - 1081818
Alignment:
| Q |
375 |
ttgagggcaatcagcaaaaagtgttttgcttttgtagcttagtttatttgtccatgt |
431 |
Q |
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| T |
1081762 |
ttgagggtaatcagcaaaaggtgttttgcttttacagcttagtttatttgtacatgt |
1081818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0565 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0565
Description:
Target: scaffold0565; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 454 - 498
Target Start/End: Complemental strand, 1235 - 1191
Alignment:
| Q |
454 |
ataatctcaattgtttgatcatatttatcttctaaggatggtgga |
498 |
Q |
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| T |
1235 |
ataatcttaattatttgatcatatttatcttctaaggatggtgga |
1191 |
T |
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