View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19450_low_5 (Length: 444)
Name: NF19450_low_5
Description: NF19450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19450_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Original strand, 19770470 - 19770916
Alignment:
| Q |
1 |
caatgagcataaaggatacatatctgtggagacactcccaccatggccatctgcaaaggaaaacatcacattaacagggaatgatatcctccaaattatt |
100 |
Q |
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| T |
19770470 |
caatgagcataaaggatacatatctgtggagacactcccaccatggccatctgcaaaggaaaatatcacattaacagggaatgatatccttcaaattatt |
19770569 |
T |
|
| Q |
101 |
acagaaaatatctaaactgtttactatgtagttagctgtgcaccagagaatgcttactcacattgacccattcatcattgggattgacatccacaggttt |
200 |
Q |
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| T |
19770570 |
acagaaaatatctaaactgtttactatgtagttagctgtgcaccggagaatgcttactcacattgacccattcatcattgggattgacatccacaggttt |
19770669 |
T |
|
| Q |
201 |
cataagactgataagagaaacacacagattagacataaacaagtaatccatgaagcttat-------------aatttacaacaatgacagaaacatcac |
287 |
Q |
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| T |
19770670 |
cataagactgataagagaaacacacagattagacataaacaagtaatccatgaagcttataattgacaacccaaatttacaacgatgacagaaacatcac |
19770769 |
T |
|
| Q |
288 |
atttcagccaagtattggtaattaacattgagggaataatagtgccaccaaatgaccatgtctatgaggatctacatcgacaacatatactctagataaa |
387 |
Q |
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| T |
19770770 |
atttcaaccaagtattggtaattaacgttgagggaataatagtgccaccaaatgaccatgtctatgaggatctaaattgacaacatatactctagataaa |
19770869 |
T |
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| Q |
388 |
tgatagaatacccaaaacaaatatacgtgcaaatcgctaatgatgat |
434 |
Q |
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| T |
19770870 |
tgataacacacccaaaacaaatatatgtacaaatcgctaaggatgat |
19770916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 348 - 434
Target Start/End: Original strand, 19770955 - 19771041
Alignment:
| Q |
348 |
tctatgaggatctacatcgacaacatatactctagataaatgatagaatacccaaaacaaatatacgtgcaaatcgctaatgatgat |
434 |
Q |
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| T |
19770955 |
tctatgaggatctacatcgacaacatatactctagataaatgatagaatacccaaaacaaatacacatgcaaatcgctaaggatgat |
19771041 |
T |
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