View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19450_low_7 (Length: 422)
Name: NF19450_low_7
Description: NF19450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19450_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 405
Target Start/End: Original strand, 51037855 - 51038241
Alignment:
| Q |
18 |
ccagaaaatattacatgaatcttttcaacaacaacaacaatcttcatnnnnnnntccagaaaatcatctcagaaacccaaattagggacttaacccaaaa |
117 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||| |||||||| ||| ||||||||||| |
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| T |
51037855 |
ccagaaaatataacatgaatcttttcaacaacaacaacaatcttcataaaaaaattcagaaaatcatctcaaaaatccaaattaaggatttaacccaaaa |
51037954 |
T |
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| Q |
118 |
acccaaattgtttctgttcgattttcaaaagctattccgacttgtatcatcaattcgatttggcgtttctactgtcattgtttgtctatttcaatttcgc |
217 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
51037955 |
acccaaattgtttctgttcgattttcaatagctattccgacttgtatcatcaattcgatttggcgtttctactgtcattgtttgtctatttcgatttctc |
51038054 |
T |
|
| Q |
218 |
gttttgatttgattctttctgatttttgtttcacatatctttgtttctgcaaaatcgattttcttcatctcctacattgtcatattcacttccttctgca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
51038055 |
gttttgatttgattctttctgatttttgtttcacatatctttgtttctgcaaaatcgattttcttcatctcctacact-tcatattcacttccttctgca |
51038153 |
T |
|
| Q |
318 |
aaattgtttcacgtatcttcaatcatagttgtatttctgagaaaacgaagattatgataagaaattaaggaaattcattatgttcttc |
405 |
Q |
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| T |
51038154 |
aaattgtttcacgtatcttcaatcacagttgtgtttctgagaaaacgaagattatgataagaaattaaggaaattcattatgttcttc |
51038241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 52104830 - 52104928
Alignment:
| Q |
19 |
cagaaaatattacatgaatcttttcaacaacaacaacaatcttcatnnnnnnntccagaaaatcatctcagaaacccaaattagggacttaacccaaaa |
117 |
Q |
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| T |
52104830 |
cagaaaatacaacatgaatattttcaacaacaacaacaatcttcataaaaaaatccagaaaatcatctcaataacccaaattagggatttaacccaaaa |
52104928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 405
Target Start/End: Original strand, 1963514 - 1963901
Alignment:
| Q |
18 |
ccagaaaatattacatgaatcttttcaacaacaacaacaatcttcatnnnnnnntccagaaaatcatctcagaaacccaaattagggacttaacccaaaa |
117 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
1963514 |
ccagaaaatataacatgaatcttttcaacaacaacaacaatcttcataaaaaattccagaaaatcatctcaaaaacccaaattagggatttaacccaaaa |
1963613 |
T |
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| Q |
118 |
acccaaattgtttctgttcgattttcaaaagctattccgacttgtatcatcaattcgatttggcgtttctactgtcattgtttgtctatttcaatttcgc |
217 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
1963614 |
acccaaattgtttctgttcgattttcaatagctattccgactggtatcatcaattcgatttggcgtttctattgtcattgtttgtctatttcaatttcgc |
1963713 |
T |
|
| Q |
218 |
gttttgatttgattctttctgatttttgtttcacatatctttgtttctgcaaaatcgattttcttcatctcctacattgtcatattcacttccttctgca |
317 |
Q |
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||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1963714 |
tttttgatttgattctttctgagttttgtctcacatatctttgtttctgcaaaatcgattttcttcatctcctacactgtcatattcacttccttctgca |
1963813 |
T |
|
| Q |
318 |
aaattgtttcacgtatcttcaatcatagttgtatttctgagaaaacgaagattatgataagaaattaaggaaattcattatgttcttc |
405 |
Q |
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|||| |||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
1963814 |
aaatcgtttcacgtatcttcaatcacagttgtgtttctgagaaaacgaagatgatgataagaaactaaggaaattcattatgttcttc |
1963901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 46524853 - 46524897
Alignment:
| Q |
16 |
atccagaaaatattacatgaatcttttcaacaacaacaacaatct |
60 |
Q |
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| T |
46524853 |
atccagaaaatacaacatgaatctcttcaacaacaacaacaatct |
46524897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 100
Target Start/End: Original strand, 46524900 - 46524958
Alignment:
| Q |
42 |
tcaacaacaacaacaatcttcatnnnnnnntccagaaaatcatctcagaaacccaaatt |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| || |||||||| |
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| T |
46524900 |
tcaacaacaacaacaatcttcataaaaaaatccagaaaatcatctcaaaatcccaaatt |
46524958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 158
Target Start/End: Original strand, 46524945 - 46524990
Alignment:
| Q |
113 |
caaaaacccaaattgtttctgttcgattttcaaaagctattccgac |
158 |
Q |
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| T |
46524945 |
caaaatcccaaattgtttctattcgatttgcaatagctattccgac |
46524990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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