View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19451_high_5 (Length: 232)
Name: NF19451_high_5
Description: NF19451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19451_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 16 - 213
Target Start/End: Original strand, 5831620 - 5831820
Alignment:
| Q |
16 |
atgaacccttttgtattaaatagagcaaaaaagcagaaccaaagagtgaatatacacc----agaaagtataacaagtaacttttcttattgagacaaaa |
111 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5831620 |
atgaacccttttgtattaaatagaataaaaaa-cagaaccaaagagtgaatatacacccaccagaaagtataacaagtaacttttcttattgagacaaaa |
5831718 |
T |
|
| Q |
112 |
ttcactgtagatatcaaatgtaataccaagagaagaaacaattccaaaatttgataattggagaacatgaaatagtacataacataaaaatgaaacatta |
211 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5831719 |
ttcactgtagatatcaaatgtgataccaagagaagaaacaattccaaaatttgataattggagaacatgaaatagtacataacataaaaatgaaacatta |
5831818 |
T |
|
| Q |
212 |
ac |
213 |
Q |
| |
|
|| |
|
|
| T |
5831819 |
ac |
5831820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University