View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19451_low_2 (Length: 513)
Name: NF19451_low_2
Description: NF19451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19451_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 447; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 17 - 502
Target Start/End: Original strand, 657202 - 657677
Alignment:
| Q |
17 |
gtttctctgcaccaaaatcatatatgcattagtagacaattttgtcatgaatttcttgcgacagaaaacaaaatgaaaagcataaatgataatgtgaagt |
116 |
Q |
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| T |
657202 |
gtttctctgcaccaaaatcatatatgcattagtagacaattttgtcatgaatttcttgcgacagaaaacaaaatgaaaagcat----------gtgaagt |
657291 |
T |
|
| Q |
117 |
agtggtaaagtaatacttacaaattccatggtgcggcgagttccttcaacaacaagattcgtcatgttaccaatcaagtaagcagttagtccaaggttga |
216 |
Q |
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| T |
657292 |
agtggtaaagtaatacttacaaattccatggtgcggcgagttccttcaacaacaagattcgtcatgttaccaatcaagtaagcagttagtccaaggttga |
657391 |
T |
|
| Q |
217 |
agagcatgtagaaaataatgaaaatcatttccatggtgttgacagcatgaagatcaccataaccaacagttgtcatggtagtgatggaccaataaattgc |
316 |
Q |
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| T |
657392 |
agagcatgtagaaaataatgaaaatcatttccatggtgttgacagcatgaagatcaccataaccaacagttgtcatggtagtgatggaccaataaattgc |
657491 |
T |
|
| Q |
317 |
tgaaatatatctaatccgagggcttgtctctcggaagtttggaatcacagctccaatccatgtctttccttcatgagggtacatatcagctagcatgtaa |
416 |
Q |
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| T |
657492 |
tgaaatatatctaatccgagggcttgtctctctgaagtttggaatcacagctccaatccatgtctttccttcatgagggtacatatcagctagcatgtaa |
657591 |
T |
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| Q |
417 |
tagaggcacccagcacaatgaactgaaaaaagtgttacctacaccataattttcaacataatcacttataattgtttcaatatatt |
502 |
Q |
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| T |
657592 |
tagaggcacccagcacaatgaactgaaaaaagtgttacctacaccataattttcaacataatcacttataattgtttcaatatatt |
657677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 207 - 450
Target Start/End: Original strand, 25505716 - 25505957
Alignment:
| Q |
207 |
ccaaggttgaagagcatgtagaaaataatgaaaatcatttccatggtgttgacagcatgaagatcaccataaccaacagttgtcatggtagtgatggacc |
306 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| ||||||||||||| | |||||| ||||||||||||||| ||||||| |||||| |||| |
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| T |
25505716 |
ccaaggttaaagagcatgtagaaaataatgaaaatcattttcatggtgttgacaacgtgaagaacaccataaccaacagatgtcatgatagtgagggaca |
25505815 |
T |
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| Q |
307 |
aataaattgctgaaatatatctaatccgagggcttgtctctcggaagtttggaatcacagctccaatccatgtctttccttcatgagggtacatatcagc |
406 |
Q |
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| T |
25505816 |
aaaaaattgctgaaataaatctaatcc-aaggcttatctctctgaagtttggaaccacaaccccaatccatatctatccttcacgagggtacatatcagc |
25505914 |
T |
|
| Q |
407 |
tagcatgtaatagaggcacccagcacaatgaactgaaaaaagtg |
450 |
Q |
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| T |
25505915 |
tagc-tgtaatagaggcacccaacacaatgaactgaaaaaagtg |
25505957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 144; Significance: 2e-75; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 207 - 450
Target Start/End: Complemental strand, 8730191 - 8729950
Alignment:
| Q |
207 |
ccaaggttgaagagcatgtagaaaataatgaaaatcatttccatggtgttgacagcatgaagatcaccataaccaacagttgtcatggtagtgatggacc |
306 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| ||||||||||||| | |||||| ||||||||||||||| ||||||| |||||| |||| |
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| T |
8730191 |
ccaaggttaaagagcatgtagaaaataatgaaaatcattttcatggtgttgacaacgtgaagaacaccataaccaacagatgtcatgatagtgagggaca |
8730092 |
T |
|
| Q |
307 |
aataaattgctgaaatatatctaatccgagggcttgtctctcggaagtttggaatcacagctccaatccatgtctttccttcatgagggtacatatcagc |
406 |
Q |
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| T |
8730091 |
aaaaaattgctgaaataaatctaatcc-aaggcttatctctctgaagtttggaaccacaaccccaatccatatctatccttcacgagggtacatatcagc |
8729993 |
T |
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| Q |
407 |
tagcatgtaatagaggcacccagcacaatgaactgaaaaaagtg |
450 |
Q |
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| T |
8729992 |
tagc-tgtaatagaggcacccaacacaatgaactgaaaaaagtg |
8729950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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