View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19451_low_3 (Length: 290)

Name: NF19451_low_3
Description: NF19451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19451_low_3
NF19451_low_3
[»] chr5 (44 HSPs)
chr5 (86-273)||(18906453-18906636)
chr5 (33-102)||(18906338-18906407)
chr5 (32-111)||(32408588-32408667)
chr5 (65-123)||(35963269-35963327)
chr5 (32-105)||(8651355-8651427)
chr5 (44-128)||(12242689-12242773)
chr5 (44-111)||(18543193-18543259)
chr5 (37-111)||(36639522-36639596)
chr5 (37-102)||(7319013-7319078)
chr5 (32-113)||(10272425-10272506)
chr5 (67-128)||(28586745-28586806)
chr5 (70-123)||(29590613-29590666)
chr5 (32-113)||(32194073-32194154)
chr5 (34-107)||(34690870-34690943)
chr5 (44-113)||(37611209-37611278)
chr5 (44-113)||(37787939-37788008)
chr5 (76-128)||(11700357-11700409)
chr5 (34-106)||(15074750-15074822)
chr5 (36-104)||(30217081-30217149)
chr5 (32-128)||(32172648-32172744)
chr5 (34-110)||(33533536-33533612)
chr5 (32-103)||(9174811-9174881)
chr5 (80-131)||(18700427-18700478)
chr5 (76-123)||(38766529-38766576)
chr5 (44-111)||(40205070-40205137)
chr5 (32-111)||(41957447-41957526)
chr5 (32-90)||(6183439-6183497)
chr5 (32-102)||(7319401-7319471)
chr5 (32-102)||(12975342-12975411)
chr5 (43-129)||(35095764-35095850)
chr5 (70-111)||(1899187-1899228)
chr5 (75-128)||(6109521-6109574)
chr5 (63-108)||(10303822-10303867)
chr5 (37-110)||(11707055-11707128)
chr5 (44-113)||(17368683-17368752)
chr5 (32-113)||(18704030-18704111)
chr5 (32-109)||(34975359-34975436)
chr5 (32-109)||(37526197-37526274)
chr5 (51-123)||(2092374-2092446)
chr5 (63-111)||(13194827-13194875)
chr5 (43-111)||(13604845-13604913)
chr5 (67-111)||(17369435-17369479)
chr5 (32-92)||(26005012-26005072)
chr5 (70-110)||(37929784-37929824)
[»] chr3 (36 HSPs)
chr3 (38-128)||(37273135-37273225)
chr3 (67-129)||(43115086-43115148)
chr3 (32-123)||(41724206-41724298)
chr3 (32-111)||(23785250-23785329)
chr3 (75-130)||(37155039-37155094)
chr3 (75-130)||(37200394-37200449)
chr3 (35-110)||(38462279-38462354)
chr3 (32-102)||(2719463-2719533)
chr3 (87-127)||(14598533-14598573)
chr3 (37-109)||(20669172-20669244)
chr3 (32-110)||(13709820-13709898)
chr3 (47-97)||(23793594-23793644)
chr3 (75-113)||(36200134-36200172)
chr3 (46-112)||(53848058-53848124)
chr3 (76-109)||(11040612-11040645)
chr3 (32-113)||(33725868-33725949)
chr3 (46-111)||(54837030-54837095)
chr3 (69-113)||(1810009-1810053)
chr3 (49-105)||(21862177-21862233)
chr3 (67-111)||(37825152-37825196)
chr3 (65-113)||(42745066-42745114)
chr3 (43-111)||(54180776-54180844)
chr3 (67-110)||(11039336-11039379)
chr3 (76-111)||(12923321-12923356)
chr3 (66-113)||(29771867-29771914)
chr3 (67-110)||(45432936-45432979)
chr3 (67-113)||(31010432-31010478)
chr3 (37-91)||(42808972-42809026)
chr3 (46-128)||(43397836-43397918)
chr3 (51-128)||(2081062-2081139)
chr3 (32-73)||(25964438-25964479)
chr3 (44-113)||(48048976-48049045)
chr3 (44-108)||(40665436-40665500)
chr3 (40-100)||(44284087-44284147)
chr3 (76-112)||(47249481-47249517)
chr3 (67-123)||(50004682-50004738)
[»] chr7 (29 HSPs)
chr7 (32-128)||(33645940-33646035)
chr7 (66-126)||(39568305-39568365)
chr7 (32-130)||(39551525-39551623)
chr7 (32-110)||(44151477-44151555)
chr7 (76-130)||(21247965-21248019)
chr7 (67-128)||(39360053-39360114)
chr7 (44-107)||(24363601-24363664)
chr7 (37-128)||(39334193-39334284)
chr7 (40-115)||(45078281-45078356)
chr7 (40-110)||(7244683-7244753)
chr7 (43-125)||(9423576-9423658)
chr7 (37-111)||(18749813-18749887)
chr7 (63-109)||(33894653-33894699)
chr7 (67-129)||(39539759-39539821)
chr7 (64-113)||(47134751-47134800)
chr7 (69-113)||(28844522-28844566)
chr7 (43-111)||(42281510-42281578)
chr7 (32-108)||(46056009-46056085)
chr7 (37-112)||(4966156-4966231)
chr7 (67-138)||(46082066-46082137)
chr7 (66-128)||(3500946-3501008)
chr7 (67-113)||(12234883-12234929)
chr7 (75-128)||(29287265-29287318)
chr7 (69-110)||(39345503-39345544)
chr7 (32-113)||(48157114-48157195)
chr7 (85-113)||(8341876-8341904)
chr7 (36-96)||(25596032-25596092)
chr7 (44-111)||(30496711-30496779)
chr7 (67-111)||(35267392-35267436)
[»] chr4 (26 HSPs)
chr4 (37-127)||(53673638-53673728)
chr4 (202-266)||(54580562-54580626)
chr4 (44-111)||(23819096-23819163)
chr4 (202-265)||(45277554-45277617)
chr4 (36-110)||(34398682-34398756)
chr4 (40-117)||(55547034-55547111)
chr4 (32-108)||(7694009-7694085)
chr4 (32-95)||(18628555-18628618)
chr4 (32-110)||(52754595-52754672)
chr4 (63-111)||(43824309-43824357)
chr4 (32-104)||(45128313-45128385)
chr4 (35-98)||(46110201-46110264)
chr4 (44-113)||(2996580-2996649)
chr4 (44-113)||(4471175-4471244)
chr4 (67-128)||(27123331-27123392)
chr4 (32-109)||(28300297-28300374)
chr4 (40-113)||(28615526-28615599)
chr4 (70-111)||(29467620-29467661)
chr4 (75-116)||(46201386-46201427)
chr4 (32-113)||(50800024-50800104)
chr4 (67-111)||(1137742-1137786)
chr4 (47-123)||(2874608-2874684)
chr4 (67-103)||(5131254-5131290)
chr4 (75-111)||(19304964-19305000)
chr4 (76-124)||(46401303-46401351)
chr4 (76-128)||(46415771-46415823)
[»] chr8 (29 HSPs)
chr8 (40-129)||(13000402-13000491)
chr8 (44-128)||(4055595-4055679)
chr8 (70-128)||(25869245-25869303)
chr8 (32-109)||(28769337-28769414)
chr8 (32-102)||(8062324-8062394)
chr8 (36-110)||(8578572-8578646)
chr8 (70-128)||(14949899-14949957)
chr8 (76-126)||(41620272-41620322)
chr8 (36-113)||(779055-779132)
chr8 (37-138)||(11569426-11569527)
chr8 (32-121)||(31705080-31705169)
chr8 (79-115)||(38421306-38421342)
chr8 (32-111)||(11795087-11795166)
chr8 (32-111)||(12361187-12361266)
chr8 (32-111)||(12851171-12851250)
chr8 (40-111)||(20672753-20672824)
chr8 (32-91)||(38036128-38036187)
chr8 (33-124)||(39551192-39551283)
chr8 (46-105)||(42215084-42215143)
chr8 (67-109)||(6950352-6950394)
chr8 (37-111)||(30277241-30277315)
chr8 (86-115)||(9572919-9572948)
chr8 (44-113)||(33553247-33553316)
chr8 (77-113)||(2594991-2595027)
chr8 (35-123)||(4558796-4558884)
chr8 (67-123)||(4560532-4560588)
chr8 (32-108)||(30389094-30389170)
chr8 (46-98)||(30918122-30918174)
chr8 (67-111)||(41606899-41606943)
[»] scaffold0044 (1 HSPs)
scaffold0044 (32-123)||(51936-52025)
[»] chr6 (34 HSPs)
chr6 (67-130)||(9027608-9027671)
chr6 (44-113)||(9667979-9668048)
chr6 (44-108)||(31583686-31583750)
chr6 (44-111)||(2160933-2161000)
chr6 (32-113)||(281842-281923)
chr6 (32-111)||(3168257-3168336)
chr6 (36-115)||(19275628-19275707)
chr6 (32-123)||(28088207-28088297)
chr6 (67-113)||(6536977-6537023)
chr6 (75-113)||(20377914-20377952)
chr6 (67-109)||(27909636-27909678)
chr6 (38-124)||(33887831-33887917)
chr6 (64-121)||(733163-733220)
chr6 (44-113)||(2112207-2112276)
chr6 (44-113)||(10031739-10031808)
chr6 (46-110)||(4420652-4420716)
chr6 (37-121)||(6647387-6647471)
chr6 (67-111)||(7785740-7785784)
chr6 (32-111)||(283090-283169)
chr6 (46-129)||(2455819-2455902)
chr6 (46-129)||(2514711-2514794)
chr6 (45-128)||(10616520-10616603)
chr6 (44-103)||(20351155-20351214)
chr6 (48-111)||(34939755-34939818)
chr6 (67-113)||(30863276-30863322)
chr6 (70-128)||(34939546-34939604)
chr6 (75-128)||(2034425-2034478)
chr6 (70-111)||(2167154-2167195)
chr6 (70-111)||(2178787-2178828)
chr6 (67-128)||(2460130-2460191)
chr6 (32-113)||(4006709-4006790)
chr6 (32-111)||(1275144-1275224)
chr6 (45-113)||(3528811-3528879)
chr6 (37-105)||(32386108-32386176)
[»] chr2 (29 HSPs)
chr2 (34-129)||(32821806-32821901)
chr2 (46-113)||(34652030-34652097)
chr2 (37-120)||(36852472-36852555)
chr2 (75-129)||(9878660-9878714)
chr2 (40-113)||(7282999-7283072)
chr2 (44-113)||(43065444-43065513)
chr2 (41-113)||(1939326-1939398)
chr2 (33-113)||(9556235-9556315)
chr2 (36-111)||(29316771-29316846)
chr2 (67-129)||(14299609-14299671)
chr2 (76-113)||(30538167-30538204)
chr2 (64-113)||(41809239-41809288)
chr2 (44-113)||(43910993-43911062)
chr2 (34-110)||(16867736-16867812)
chr2 (67-115)||(25796192-25796240)
chr2 (67-111)||(28677655-28677699)
chr2 (44-108)||(35379015-35379079)
chr2 (32-111)||(8017429-8017508)
chr2 (54-113)||(14451044-14451103)
chr2 (38-113)||(38077067-38077142)
chr2 (69-115)||(10285892-10285938)
chr2 (70-128)||(33525946-33526004)
chr2 (67-124)||(1160654-1160711)
chr2 (32-113)||(43141866-43141947)
chr2 (76-113)||(44606104-44606141)
chr2 (33-113)||(1893275-1893355)
chr2 (44-128)||(15120190-15120274)
chr2 (46-110)||(28039329-28039393)
chr2 (67-115)||(29633103-29633151)
[»] chr1 (42 HSPs)
chr1 (32-111)||(28689448-28689529)
chr1 (32-113)||(17420198-17420279)
chr1 (64-128)||(19412576-19412640)
chr1 (37-128)||(27140478-27140569)
chr1 (43-110)||(35017582-35017649)
chr1 (32-128)||(38867810-38867906)
chr1 (32-103)||(6659509-6659580)
chr1 (44-111)||(12564495-12564562)
chr1 (32-111)||(34290231-34290310)
chr1 (33-104)||(39347970-39348041)
chr1 (32-110)||(4549225-4549303)
chr1 (36-113)||(4868399-4868476)
chr1 (32-105)||(6279394-6279467)
chr1 (32-109)||(14629964-14630041)
chr1 (65-110)||(29007713-29007758)
chr1 (32-113)||(30371143-30371224)
chr1 (75-111)||(12477283-12477319)
chr1 (32-111)||(4622088-4622167)
chr1 (46-113)||(4699609-4699676)
chr1 (36-111)||(7136994-7137069)
chr1 (67-110)||(7761608-7761651)
chr1 (70-113)||(15579515-15579558)
chr1 (44-111)||(27963366-27963433)
chr1 (40-103)||(28077073-28077136)
chr1 (50-113)||(46252676-46252739)
chr1 (44-110)||(16981933-16981999)
chr1 (70-128)||(33722380-33722438)
chr1 (31-97)||(34179882-34179948)
chr1 (76-110)||(37941982-37942016)
chr1 (67-113)||(49517091-49517137)
chr1 (75-128)||(6262776-6262829)
chr1 (46-111)||(10199404-10199469)
chr1 (75-116)||(34278684-34278725)
chr1 (38-91)||(51929715-51929768)
chr1 (76-112)||(3224462-3224498)
chr1 (40-124)||(11211121-11211205)
chr1 (75-123)||(17628637-17628685)
chr1 (32-104)||(23902070-23902142)
chr1 (67-111)||(26184778-26184822)
chr1 (36-108)||(33723381-33723453)
chr1 (32-108)||(44031998-44032074)
chr1 (39-111)||(48748601-48748673)
[»] scaffold0286 (1 HSPs)
scaffold0286 (44-111)||(16117-16184)
[»] scaffold0012 (1 HSPs)
scaffold0012 (87-127)||(38642-38682)
[»] scaffold0147 (1 HSPs)
scaffold0147 (79-123)||(12688-12732)
[»] scaffold0024 (1 HSPs)
scaffold0024 (44-128)||(27583-27667)
[»] scaffold0311 (1 HSPs)
scaffold0311 (70-113)||(10611-10654)
[»] scaffold0153 (2 HSPs)
scaffold0153 (47-109)||(6492-6554)
scaffold0153 (47-109)||(13512-13574)
[»] scaffold0254 (1 HSPs)
scaffold0254 (70-111)||(3506-3547)


Alignment Details
Target: chr5 (Bit Score: 131; Significance: 5e-68; HSPs: 44)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 86 - 273
Target Start/End: Original strand, 18906453 - 18906636
Alignment:
Q  86 aaaacaacttatggacatgtcataagttatgtccataaactctttttaacagtttcgcatgtgattatactaagttaatcgaaaaataagaaatcagaag 185  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||| || |    || |||| ||||||||||||||||||||||||||  ||    
T  18906453 aaaaaaacttatggacatgtcataagttatgtccataaactatttttaacagtctcac----gactataataagttaatcgaaaaataagaaatcaagag 18906548  T
Q  186 ggaagttgtgaataatcttacaaatccatcctctgagatatcaatgagctgataatcagtgcgattaacatgaggaacctgttgtaac 273  Q
    | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18906549 gtaagttgtgagtaatcttacaaatccatcctctgagatatcaatgagctgataatcagtgcgattaacatgaggaacctgttgtaac 18906636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 18906338 - 18906407
Alignment:
Q  33 aagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggaca 102  Q
    ||||||||||||||||||||||||| ||| | ||||||||||||||||||| ||||||||||||||||||    
T  18906338 aagctataaactgttttcataagctatcttgaaaagcttatcgaaataagctgaaaacaacttatggaca 18906407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 111
Target Start/End: Complemental strand, 32408667 - 32408588
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataag 111  Q
    ||||||||||||| |||||||||||| ||  | | ||||||| ||||||||| |||| ||||||| ||||||||||||||    
T  32408667 taagctataaactattttcataagctatcctgaagagcttatggaaataagcagaaaccaacttacggacatgtcataag 32408588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 123
Target Start/End: Original strand, 35963269 - 35963327
Alignment:
Q  65 aaagcttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccataa 123  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||| | ||| |||||||    
T  35963269 aaagcttatggaaataagctgaaaacaacttatggacatgtcatacgctatttccataa 35963327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 8651427 - 8651355
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgt 105  Q
    |||||||||||||||||||||||||| | || |  ||||||| |||||| || |||||||||||||||||||||    
T  8651427 taagctataaactgttttcataagctat-tctgggagcttatggaaatatgctgaaaacaacttatggacatgt 8651355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 44 - 128
Target Start/End: Complemental strand, 12242773 - 12242689
Alignment:
Q  44 tgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccataaactct 128  Q
    |||||||||||||| ||| ||| ||||||| ||| ||||| |||||||||| |||  ||||||||||||| | ||||||| ||||    
T  12242773 tgttttcataagctatcttggagagcttatggaagtaagctgaaaacaactaatgttcatgtcataagttttttccataagctct 12242689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 111
Target Start/End: Complemental strand, 18543259 - 18543193
Alignment:
Q  44 tgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataag 111  Q
    |||||||||||||| ||  ||| ||||||| ||||||||| |||||||||| ||||||||||||||||    
T  18543259 tgttttcataagctatcctggagagcttat-gaaataagctgaaaacaactcatggacatgtcataag 18543193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 111
Target Start/End: Original strand, 36639522 - 36639596
Alignment:
Q  37 tataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataag 111  Q
    |||| |||||||||||||||| ||| | | |||||||  |||||||  |||||||||||||||||| ||||||||    
T  36639522 tatagactgttttcataagctatcttgaagagcttatgaaaataagaggaaaacaacttatggacacgtcataag 36639596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 102
Target Start/End: Complemental strand, 7319078 - 7319013
Alignment:
Q  37 tataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggaca 102  Q
    ||||||||||||||||||||| ||| ||| | |||||  |||||||| || |||||||||||||||    
T  7319078 tataaactgttttcataagctatcttggagaacttatgaaaataagctgagaacaacttatggaca 7319013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 10272506 - 10272425
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagtt 113  Q
    ||||||||||  |||||||||||||  ||| ||| || ||||  |||||||| ||||||||||||  |||||||||||||||    
T  10272506 taagctataagttgttttcataagccatcttggagagtttatgaaaataagctgaaaacaacttacagacatgtcataagtt 10272425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 128
Target Start/End: Complemental strand, 28586806 - 28586745
Alignment:
Q  67 agcttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccataaactct 128  Q
    ||||||||||||||||| ||||||| |||| ||| |||||||||| ||| ||||||| ||||    
T  28586806 agcttatcgaaataagctgaaaacagcttacggatatgtcataagctatttccataagctct 28586745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 29590666 - 29590613
Alignment:
Q  70 ttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccataa 123  Q
    |||| ||||||||  |||||||||||||||||| |||||||||| |||||||||    
T  29590666 ttatggaaataagttgaaaacaacttatggacaagtcataagttttgtccataa 29590613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 32194154 - 32194073
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagtt 113  Q
    ||||||||||  ||||||  |||||| |||  || |||||||  |||||||| |||||||||||||||| ||||||||||||    
T  32194154 taagctataagatgtttttttaagctatctttgagagcttatataaataagctgaaaacaacttatggaaatgtcataagtt 32194073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 107
Target Start/End: Original strand, 34690870 - 34690943
Alignment:
Q  34 agctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtca 107  Q
    ||||||||  |||| ||||||||  ||| ||| ||||||| |||||||| ||| ||||||||||||||||||||    
T  34690870 agctataagttgttctcataagccatcttggagagcttatggaaataagtcgataacaacttatggacatgtca 34690943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 37611278 - 37611209
Alignment:
Q  44 tgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagtt 113  Q
    |||||||||||||| ||| ||| ||||||| ||||||| | ||||||| |||||| |||||||| |||||    
T  37611278 tgttttcataagctatcttggagagcttatggaaataacctgaaaacagcttatgaacatgtcacaagtt 37611209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 37788008 - 37787939
Alignment:
Q  44 tgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagtt 113  Q
    |||||||||||||| ||| ||| ||||||| ||||||| | ||||||| |||||| |||||||| |||||    
T  37788008 tgttttcataagctatcttggagagcttatggaaataacctgaaaacagcttatgaacatgtcacaagtt 37787939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 128
Target Start/End: Complemental strand, 11700409 - 11700357
Alignment:
Q  76 aaataagccgaaaacaacttatggacatgtcataagttatgtccataaactct 128  Q
    |||||| | ||||||| ||||||||||||||||||||| | ||||||||||||    
T  11700409 aaataatctgaaaacagcttatggacatgtcataagttgtttccataaactct 11700357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 106
Target Start/End: Complemental strand, 15074822 - 15074750
Alignment:
Q  34 agctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtc 106  Q
    ||||||||  |||||||||||| | |   ||||||||||| ||||||||| ||||||| ||||||||||||||    
T  15074822 agctataagttgttttcataagttatactggaaagcttatggaaataagctgaaaacagcttatggacatgtc 15074750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 104
Target Start/End: Original strand, 30217081 - 30217149
Alignment:
Q  36 ctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatg 104  Q
    |||||| ||| ||||||||||| ||  ||| ||||||| ||||||| || |||||||||||||||||||    
T  30217081 ctataagctgctttcataagctatcctggagagcttatggaaataaacctaaaacaacttatggacatg 30217149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 128
Target Start/End: Original strand, 32172648 - 32172744
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccataaactct 128  Q
    |||||||||| ||||||||||||||| ||  | | | || || ||||||||| |||||   ||||||||||||||||||||| | ||||||| ||||    
T  32172648 taagctataagctgttttcataagctatcatgaagaactaatggaaataagctgaaaatggcttatggacatgtcataagttgtttccataagctct 32172744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 110
Target Start/End: Complemental strand, 33533612 - 33533536
Alignment:
Q  34 agctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataa 110  Q
    ||||||||  |||||||| ||||| ||| ||| ||||||| ||||||||  |||||||||||||| | |||||||||    
T  33533612 agctataaggtgttttcacaagctatcttggagagcttatggaaataagttgaaaacaacttatgaatatgtcataa 33533536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 9174811 - 9174881
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacat 103  Q
    |||||||||||||||||||||||||| | || |  |||||||||||| | |  |||||||||||||||||||    
T  9174811 taagctataaactgttttcataagctat-tctgggagcttatcgaaaaatgttgaaaacaacttatggacat 9174881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 131
Target Start/End: Original strand, 18700427 - 18700478
Alignment:
Q  80 aagccgaaaacaacttatggacatgtcataagttatgtccataaactctttt 131  Q
    |||| ||||||||||||| ||||||||||||||| | ||||||| |||||||    
T  18700427 aagctgaaaacaacttatagacatgtcataagttgtttccataagctctttt 18700478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 38766576 - 38766529
Alignment:
Q  76 aaataagccgaaaacaacttatggacatgtcataagttatgtccataa 123  Q
    ||||||| |||||||||||||||||| ||||||||||| | |||||||    
T  38766576 aaataagtcgaaaacaacttatggacgtgtcataagttgtttccataa 38766529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 111
Target Start/End: Complemental strand, 40205137 - 40205070
Alignment:
Q  44 tgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataag 111  Q
    |||||||||||||| ||  ||| ||||||| ||||||||| |||||||  |||||||||||| |||||    
T  40205137 tgttttcataagctatcctggagagcttatagaaataagctgaaaacagattatggacatgttataag 40205070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 111
Target Start/End: Complemental strand, 41957526 - 41957447
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataag 111  Q
    |||| ||||| ||||||||||||||| ||   || | |||||  |||||||  |||||||||||||||||||||||||||    
T  41957526 taagttataagctgttttcataagctatccttgagaacttatgaaaataagatgaaaacaacttatggacatgtcataag 41957447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 6183439 - 6183497
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaac 90  Q
    |||||||||| |||| |||||||||||| | ||| ||||||| ||||||||| ||||||    
T  6183439 taagctataagctgtattcataagctgttttggagagcttatggaaataagctgaaaac 6183497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 102
Target Start/End: Original strand, 7319401 - 7319471
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggaca 102  Q
    ||||||||||||||||||| |||||| ||| ||| | |||||  |||||||| |||| |||||||| ||||    
T  7319401 taagctataaactgttttcgtaagctatcttggagaacttataaaaataagctgaaagcaacttatagaca 7319471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 102
Target Start/End: Original strand, 12975342 - 12975411
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggaca 102  Q
    |||||||||| |||| |||||||||| ||| ||| ||||||| ||| ||||  ||||||||||||||||||    
T  12975342 taagctataagctgtgttcataagctatcttggagagcttatggaa-taagttgaaaacaacttatggaca 12975411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 129
Target Start/End: Complemental strand, 35095850 - 35095764
Alignment:
Q  43 ctgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccataaactctt 129  Q
    |||||||||| |||| ||| | ||||||||| ||||||||  ||||||  | |||| |||||||||||| ||| ||||||| |||||    
T  35095850 ctgttttcatgagctatcttgtaaagcttatggaaataagttgaaaacggcatatgtacatgtcataagatatttccataagctctt 35095764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 1899187 - 1899228
Alignment:
Q  70 ttatcgaaataagccgaaaacaacttatggacatgtcataag 111  Q
    |||| ||||||||| |||||||||||||| ||||||||||||    
T  1899187 ttatggaaataagctgaaaacaacttatgcacatgtcataag 1899228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 128
Target Start/End: Original strand, 6109521 - 6109574
Alignment:
Q  75 gaaataagccgaaaacaacttatggacatgtcataagttatgtccataaactct 128  Q
    ||||||||| ||||||||||||||||||| |||||| || | ||||||| ||||    
T  6109521 gaaataagctgaaaacaacttatggacatatcataatttttttccataagctct 6109574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 10303822 - 10303867
Alignment:
Q  63 ggaaagcttatcgaaataagccgaaaacaacttatggacatgtcat 108  Q
    |||||||||||  |||||||| || |||||||||||||||||||||    
T  10303822 ggaaagcttatgaaaataagctgacaacaacttatggacatgtcat 10303867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 110
Target Start/End: Original strand, 11707055 - 11707128
Alignment:
Q  37 tataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataa 110  Q
    ||||| ||||||||||||||| ||| | | ||||| |  |||||||| |||||||||||||  |||||||||||    
T  11707055 tataagctgttttcataagctatcttgtagagcttttgaaaataagctgaaaacaacttataaacatgtcataa 11707128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 113
Target Start/End: Original strand, 17368683 - 17368752
Alignment:
Q  44 tgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagtt 113  Q
    |||||||||||||| ||| ||| || |||| ||||||||| ||||||  | |||| ||||||||||||||    
T  17368683 tgttttcataagctatcttggagaggttatggaaataagctgaaaactgcatatgaacatgtcataagtt 17368752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 18704111 - 18704030
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagtt 113  Q
    ||||||||||  |||||||||||||| |  |  | | ||||| ||||||||| ||||||||||||| ||||||| |||||||    
T  18704111 taagctataagttgttttcataagctattacaaagatcttatggaaataagctgaaaacaacttatagacatgttataagtt 18704030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 34975359 - 34975436
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcata 109  Q
    ||||||||||| ||||||| |||||| ||  ||| |||| || ||||||||| |||||| | ||||||| ||||||||    
T  34975359 taagctataaattgttttcgtaagctatcctggagagctaatggaaataagctgaaaacgatttatggatatgtcata 34975436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 109
Target Start/End: Complemental strand, 37526274 - 37526197
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcata 109  Q
    ||||||||||  |||||||||||| |||   ||| ||||||| ||||||||| ||||||| |||||  ||||||||||    
T  37526274 taagctataagttgttttcataagttgttctggagagcttatggaaataagctgaaaacagcttattaacatgtcata 37526197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 123
Target Start/End: Original strand, 2092374 - 2092446
Alignment:
Q  51 ataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccataa 123  Q
    ||||||| ||| ||||| ||||| | || ||||  |||||| ||||||||||||||||||| ||| |||||||    
T  2092374 ataagctatcttggaaaacttatggtaaaaagcaaaaaacagcttatggacatgtcataagctatttccataa 2092446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 13194827 - 13194875
Alignment:
Q  63 ggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataag 111  Q
    ||||||||||| |||||||||  |||||||| ||||||||||| |||||    
T  13194827 ggaaagcttatggaaataagctaaaaacaacatatggacatgttataag 13194875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 13604913 - 13604845
Alignment:
Q  43 ctgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataag 111  Q
    ||||||||||||| | ||| | | |||||||  |||||||  ||||||||| |||||||||||||||||    
T  13604913 ctgttttcataagttatcttgaagagcttatgaaaataagttgaaaacaacgtatggacatgtcataag 13604845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 17369479 - 17369435
Alignment:
Q  67 agcttatcgaaataagccgaaaacaacttatggacatgtcataag 111  Q
    ||||||| ||||||| | ||||||||||||| |||||||||||||    
T  17369479 agcttatagaaataatctgaaaacaacttatagacatgtcataag 17369435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 92
Target Start/End: Complemental strand, 26005072 - 26005012
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaa 92  Q
    ||||||||| ||||||||||||||||  || ||| ||||||| ||||||||  ||||||||    
T  26005072 taagctatatactgttttcataagctagcttggagagcttatggaaataaggtgaaaacaa 26005012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 37929824 - 37929784
Alignment:
Q  70 ttatcgaaataagccgaaaacaacttatggacatgtcataa 110  Q
    |||||||||||||| |||||||||||||||| || ||||||    
T  37929824 ttatcgaaataagctgaaaacaacttatggatatttcataa 37929784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 38 - 128
Target Start/End: Original strand, 37273135 - 37273225
Alignment:
Q  38 ataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccataaactct 128  Q
    |||||||||||||||||||| ||| ||| | ||||| ||||||||  ||||||||||||||||||||||||||||| | ||||||| ||||    
T  37273135 ataaactgttttcataagctatcttggagaacttatggaaataagttgaaaacaacttatggacatgtcataagttgtttccataagctct 37273225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 129
Target Start/End: Original strand, 43115086 - 43115148
Alignment:
Q  67 agcttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccataaactctt 129  Q
    ||||||| ||||||||| |||||||| |||||||||||||||||||| | |||||||||||||    
T  43115086 agcttatggaaataagctgaaaacaagttatggacatgtcataagttgtttccataaactctt 43115148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 123
Target Start/End: Original strand, 41724206 - 41724298
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttat-cgaaataagccgaaaacaacttatggacatgtcataagttatgtccataa 123  Q
    ||||||||||||||||||||| |||| ||   || |||||||   |||||||| ||||||||||||||||||||||||||||| | |||||||    
T  41724206 taagctataaactgttttcatcagctatccttgagagcttatataaaataagctgaaaacaacttatggacatgtcataagttgtttccataa 41724298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 111
Target Start/End: Original strand, 23785250 - 23785329
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataag 111  Q
    |||||||||||||||||||| ||||| ||  ||| ||||||| |||| |||| |||||||||||||||||| | ||||||    
T  23785250 taagctataaactgttttcacaagctctcatggagagcttatggaaacaagctgaaaacaacttatggacacgccataag 23785329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 130
Target Start/End: Original strand, 37155039 - 37155094
Alignment:
Q  75 gaaataagccgaaaacaacttatggacatgtcataagttatgtccataaactcttt 130  Q
    ||||||||  ||||||||||||||||||||| ||||||||| ||||||||||||||    
T  37155039 gaaataagtagaaaacaacttatggacatgtaataagttatttccataaactcttt 37155094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 75 - 130
Target Start/End: Original strand, 37200394 - 37200449
Alignment:
Q  75 gaaataagccgaaaacaacttatggacatgtcataagttatgtccataaactcttt 130  Q
    ||||||||  ||||||||||||||||||||| ||||||||| ||||||||||||||    
T  37200394 gaaataagtagaaaacaacttatggacatgtaataagttatttccataaactcttt 37200449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 110
Target Start/End: Original strand, 38462279 - 38462354
Alignment:
Q  35 gctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataa 110  Q
    ||||||||||||||||||||||| ||   || ||||||| ||||||||| ||||||||||||||| || |||||||    
T  38462279 gctataaactgttttcataagctatccaagatagcttatggaaataagctgaaaacaacttatggtcaagtcataa 38462354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 102
Target Start/End: Original strand, 2719463 - 2719533
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggaca 102  Q
    |||||||||||||||||||||||||| ||| ||| | |||||  |||||||| || |||||||||||||||    
T  2719463 taagctataaactgttttcataagctatcttggagaacttatgaaaataagctgagaacaacttatggaca 2719533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 87 - 127
Target Start/End: Complemental strand, 14598573 - 14598533
Alignment:
Q  87 aaacaacttatggacatgtcataagttatgtccataaactc 127  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  14598573 aaacaacttatggacatgtcataagttatttccataaactc 14598533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 37 - 109
Target Start/End: Original strand, 20669172 - 20669244
Alignment:
Q  37 tataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcata 109  Q
    ||||| ||||||||||||||| ||| ||| |||||||  |||||||| ||||||| |||||| ||||||||||    
T  20669172 tataagctgttttcataagctatcttggagagcttatgtaaataagcggaaaacagcttatgaacatgtcata 20669244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 110
Target Start/End: Complemental strand, 13709898 - 13709820
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataa 110  Q
    |||| ||||| ||||||||||||||| ||  ||| || |||| ||||||| | ||||||||||||||||| ||||||||    
T  13709898 taaggtataatctgttttcataagctatcctggagagtttattgaaataaactgaaaacaacttatggacttgtcataa 13709820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 23793594 - 23793644
Alignment:
Q  47 tttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttat 97  Q
    ||||||||||| ||| ||||||||||| ||||||||| |||||||||||||    
T  23793594 tttcataagctatcttggaaagcttatagaaataagctgaaaacaacttat 23793644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 113
Target Start/End: Original strand, 36200134 - 36200172
Alignment:
Q  75 gaaataagccgaaaacaacttatggacatgtcataagtt 113  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  36200134 gaaataagctgaaaacaacttatggacatgtcataagtt 36200172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 112
Target Start/End: Complemental strand, 53848124 - 53848058
Alignment:
Q  46 ttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagt 112  Q
    ||||||||| || || | || ||||||| ||||||||||||||||| ||||||||||||||| ||||    
T  53848124 ttttcataaactatcccagagagcttatagaaataagccgaaaacagcttatggacatgtcacaagt 53848058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 109
Target Start/End: Complemental strand, 11040645 - 11040612
Alignment:
Q  76 aaataagccgaaaacaacttatggacatgtcata 109  Q
    ||||||||||||||||||||||||||||||||||    
T  11040645 aaataagccgaaaacaacttatggacatgtcata 11040612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 33725949 - 33725868
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagtt 113  Q
    |||||||||||||||||| |||| || ||  ||||||||||| ||||||||  ||||||| | |||  ||||||||||||||    
T  33725949 taagctataaactgtttttataaactatcctggaaagcttatagaaataagatgaaaacagcatatcaacatgtcataagtt 33725868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 54837095 - 54837030
Alignment:
Q  46 ttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataag 111  Q
    |||||||||||| ||| ||| |||||||  |||||||| |||||||| ||||| ||||||||||||    
T  54837095 ttttcataagctatcttggacagcttataaaaataagcggaaaacaagttatgaacatgtcataag 54837030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 1810009 - 1810053
Alignment:
Q  69 cttatcgaaataagccgaaaacaacttatggacatgtcataagtt 113  Q
    ||||| ||||||||| |||||||||| ||||||||||||||||||    
T  1810009 cttatagaaataagcagaaaacaactcatggacatgtcataagtt 1810053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 105
Target Start/End: Complemental strand, 21862233 - 21862177
Alignment:
Q  49 tcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgt 105  Q
    |||| |||| ||| ||| ||||||| ||||||||| |||||||||||||||||||||    
T  21862233 tcattagctatctgggagagcttatggaaataagctgaaaacaacttatggacatgt 21862177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 37825152 - 37825196
Alignment:
Q  67 agcttatcgaaataagccgaaaacaacttatggacatgtcataag 111  Q
    ||||||| ||||||| | |||||||||||||||||||||||||||    
T  37825152 agcttatggaaataacctgaaaacaacttatggacatgtcataag 37825196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 42745066 - 42745114
Alignment:
Q  65 aaagcttatcgaaataagccgaaaacaacttatggacatgtcataagtt 113  Q
    ||||||||| ||||||||  |||||||||||||| ||||||||||||||    
T  42745066 aaagcttatggaaataagatgaaaacaacttatgaacatgtcataagtt 42745114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 54180844 - 54180776
Alignment:
Q  43 ctgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataag 111  Q
    ||||||||||||||| |   ||| |||||||  ||||||||  ||||||||||||||||||||||||||    
T  54180844 ctgttttcataagctattatggagagcttatataaataagctaaaaacaacttatggacatgtcataag 54180776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 110
Target Start/End: Complemental strand, 11039379 - 11039336
Alignment:
Q  67 agcttatcgaaataagccgaaaacaacttatggacatgtcataa 110  Q
    ||||||| || |||||| ||||||||||||||||||||||||||    
T  11039379 agcttatggagataagctgaaaacaacttatggacatgtcataa 11039336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 111
Target Start/End: Complemental strand, 12923356 - 12923321
Alignment:
Q  76 aaataagccgaaaacaacttatggacatgtcataag 111  Q
    |||||||| |||||||||||||||||||||||||||    
T  12923356 aaataagctgaaaacaacttatggacatgtcataag 12923321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 113
Target Start/End: Original strand, 29771867 - 29771914
Alignment:
Q  66 aagcttatcgaaataagccgaaaacaacttatggacatgtcataagtt 113  Q
    |||||||| ||||||||  |||||||||||||||||||||| ||||||    
T  29771867 aagcttatggaaataagttgaaaacaacttatggacatgtcctaagtt 29771914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 110
Target Start/End: Complemental strand, 45432979 - 45432936
Alignment:
Q  67 agcttatcgaaataagccgaaaacaacttatggacatgtcataa 110  Q
    ||||||| ||||||||| |||||||||||||| |||||||||||    
T  45432979 agcttatggaaataagctgaaaacaacttatgaacatgtcataa 45432936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 113
Target Start/End: Original strand, 31010432 - 31010478
Alignment:
Q  67 agcttatcgaaataagccgaaaacaacttatggacatgtcataagtt 113  Q
    ||||||| ||| ||||| ||||||| |||||||||||||||||||||    
T  31010432 agcttatggaattaagctgaaaacagcttatggacatgtcataagtt 31010478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 91
Target Start/End: Original strand, 42808972 - 42809026
Alignment:
Q  37 tataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaaca 91  Q
    ||||| ||||||||||||||| ||||||| ||||| || |||||||| |||||||    
T  42808972 tataagctgttttcataagctctctcggagagcttgtcaaaataagctgaaaaca 42809026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 128
Target Start/End: Original strand, 43397836 - 43397918
Alignment:
Q  46 ttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccataaactct 128  Q
    |||||||||| | || |||| ||||||| ||| ||||  |||||||| |||||||||||| ||||| ||| || |||||||||    
T  43397836 ttttcataagttatcgcggagagcttatggaagtaagttgaaaacaatttatggacatgttataagctatttctataaactct 43397918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 128
Target Start/End: Complemental strand, 2081139 - 2081062
Alignment:
Q  51 ataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccataaactct 128  Q
    ||||||| ||||||| |||| || ||||||||| |||||||||||| |||  |||||| || ||| ||||||| ||||    
T  2081139 ataagctatctcggagagctaatggaaataagctgaaaacaacttaaggatgtgtcattagctatttccataagctct 2081062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 73
Target Start/End: Original strand, 25964438 - 25964479
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttat 73  Q
    |||||||||| ||||||||||||||| || ||||||||||||    
T  25964438 taagctataagctgttttcataagctatcccggaaagcttat 25964479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 48049045 - 48048976
Alignment:
Q  44 tgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagtt 113  Q
    ||||||||| |||| ||| ||  || |||| ||||||||| ||||||| |||||||||||||||| ||||    
T  48049045 tgttttcattagctatcttggggaggttatggaaataagctgaaaacagcttatggacatgtcatgagtt 48048976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 108
Target Start/End: Original strand, 40665436 - 40665500
Alignment:
Q  44 tgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcat 108  Q
    |||||||||||| | ||| ||| |||||||  |||||||| ||||||| |||||| |||||||||    
T  40665436 tgttttcataagttatcttggagagcttataaaaataagctgaaaacagcttatgaacatgtcat 40665500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 100
Target Start/End: Complemental strand, 44284147 - 44284087
Alignment:
Q  40 aaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatgga 100  Q
    |||||||||||||||||| ||  ||| ||||||| ||||||||| ||||| | ||||||||    
T  44284147 aaactgttttcataagctatcctggagagcttatagaaataagctgaaaatagcttatgga 44284087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 112
Target Start/End: Complemental strand, 47249517 - 47249481
Alignment:
Q  76 aaataagccgaaaacaacttatggacatgtcataagt 112  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  47249517 aaataagccaaaaacaacttatgaacatgtcataagt 47249481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 50004682 - 50004738
Alignment:
Q  67 agcttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccataa 123  Q
    ||||||| ||||||||| ||||||| |||| | |||||||||||||| | |||||||    
T  50004682 agcttattgaaataagctgaaaacagcttaagaacatgtcataagttgtttccataa 50004738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 32 - 128
Target Start/End: Complemental strand, 33646035 - 33645940
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccataaactct 128  Q
    |||||||||||||||||||||||||| ||| ||| ||||||| ||||||| |  |||||||||||| ||||||||||||||| | ||||||| ||||    
T  33646035 taagctataaactgttttcataagctatct-ggagagcttatggaaataacctaaaaacaacttatagacatgtcataagttgtttccataagctct 33645940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 66 - 126
Target Start/End: Complemental strand, 39568365 - 39568305
Alignment:
Q  66 aagcttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccataaact 126  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  39568365 aagcttacagaaataagccgaaaacaacttatggacatgtcataagttatttccataaact 39568305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 32 - 130
Target Start/End: Complemental strand, 39551623 - 39551525
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccataaactcttt 130  Q
    |||||||||| || |||||||||  | ||| ||||||||||| ||||||||| || |||| ||||||||||||||||||||| | ||||||| ||||||    
T  39551623 taagctataatctattttcataacttctctaggaaagcttatggaaataagctgacaacaccttatggacatgtcataagttgtttccataacctcttt 39551525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 110
Target Start/End: Complemental strand, 44151555 - 44151477
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataa 110  Q
    ||||||||||  ||||||||||| || ||| | ||||||||| ||||||||| ||||||| ||||||||||||||||||    
T  44151555 taagctataagttgttttcataaactatcttgaaaagcttatggaaataagctgaaaacatcttatggacatgtcataa 44151477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 130
Target Start/End: Original strand, 21247965 - 21248019
Alignment:
Q  76 aaataagccgaaaacaacttatggacatgtcataagttatgtccataaactcttt 130  Q
    ||||||||  ||||||||||||| |||||||||||||||| ||||||||||||||    
T  21247965 aaataagcttaaaacaacttatgaacatgtcataagttatttccataaactcttt 21248019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 128
Target Start/End: Original strand, 39360053 - 39360114
Alignment:
Q  67 agcttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccataaactct 128  Q
    ||||||| ||||||||| |||| ||||||||||| |||||||||||| | ||||||||||||    
T  39360053 agcttattgaaataagctgaaagcaacttatggatatgtcataagttgtttccataaactct 39360114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 24363664 - 24363601
Alignment:
Q  44 tgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtca 107  Q
    |||||||||||||| ||  ||| || |||| ||||||||| |||||||||||||||||||||||    
T  24363664 tgttttcataagctatcctggagaggttatggaaataagctgaaaacaacttatggacatgtca 24363601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 128
Target Start/End: Original strand, 39334193 - 39334284
Alignment:
Q  37 tataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccataaactct 128  Q
    ||||| ||||||||| ||||| ||  ||  ||||||| ||||||||| |||  ||||||||||||||||||||| || | ||||||||||||    
T  39334193 tataagctgttttcaaaagctatcctggcgagcttatggaaataagctgaatgcaacttatggacatgtcataaattgtttccataaactct 39334284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 115
Target Start/End: Original strand, 45078281 - 45078356
Alignment:
Q  40 aaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagttat 115  Q
    ||||| |||||||||||| || |||| | ||| | ||||||||  ||||||| |||||||||||||||||||||||    
T  45078281 aaacttttttcataagctatcacggataacttgtggaaataagttgaaaacagcttatggacatgtcataagttat 45078356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 110
Target Start/End: Original strand, 7244683 - 7244753
Alignment:
Q  40 aaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataa 110  Q
    |||||||||||||||||| | | ||| |||||||  |||||||| ||||||||||||||  ||||||||||    
T  7244683 aaactgttttcataagctatattggagagcttatgaaaataagctgaaaacaacttatgagcatgtcataa 7244753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 125
Target Start/End: Complemental strand, 9423658 - 9423576
Alignment:
Q  43 ctgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccataaac 125  Q
    ||||||| ||||||| ||  ||| ||||| | ||||||||| |||||||||||||| ||||||||||| || | |||||||||    
T  9423658 ctgttttaataagctatcctggagagcttcttgaaataagctgaaaacaacttatgaacatgtcataaattgtttccataaac 9423576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 18749887 - 18749813
Alignment:
Q  37 tataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataag 111  Q
    ||||| ||||||||||||||| || |||||| ||||| ||||||||| ||||||  |||||| ||||||| ||||    
T  18749887 tataagctgttttcataagctatcacggaaaacttatggaaataagctgaaaactgcttatgaacatgtcgtaag 18749813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 109
Target Start/End: Original strand, 33894653 - 33894699
Alignment:
Q  63 ggaaagcttatcgaaataagccgaaaacaacttatggacatgtcata 109  Q
    |||||| |||| ||||||||| |||||||||||||||||||||||||    
T  33894653 ggaaagtttattgaaataagctgaaaacaacttatggacatgtcata 33894699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 129
Target Start/End: Complemental strand, 39539821 - 39539759
Alignment:
Q  67 agcttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccataaactctt 129  Q
    ||||| || |||||||| ||||||| ||||||||||||||||||||| | ||| |||||||||    
T  39539821 agcttgtcaaaataagctgaaaacagcttatggacatgtcataagttgtttccgtaaactctt 39539759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 113
Target Start/End: Complemental strand, 47134800 - 47134751
Alignment:
Q  64 gaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagtt 113  Q
    ||||||||||  |||||||| ||||||||||||||||| |||||||||||    
T  47134800 gaaagcttatgaaaataagctgaaaacaacttatggacgtgtcataagtt 47134751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 28844522 - 28844566
Alignment:
Q  69 cttatcgaaataagccgaaaacaacttatggacatgtcataagtt 113  Q
    ||||||||||||| | |||||||||| ||||||||||||||||||    
T  28844522 cttatcgaaataaactgaaaacaactgatggacatgtcataagtt 28844566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 42281578 - 42281510
Alignment:
Q  43 ctgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataag 111  Q
    ||||||||||||||| || | || ||||||| ||||||||| |||||||| ||||  ||||||||||||    
T  42281578 ctgttttcataagctatcactgagagcttatagaaataagctgaaaacaaattatttacatgtcataag 42281510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 46056085 - 46056009
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcat 108  Q
    ||||||||||| |||||||||||||| || || | ||||||| |||||||||  ||||||  |||||||||| ||||    
T  46056085 taagctataaattgttttcataagctatcccgtagagcttatggaaataagctaaaaacatattatggacatatcat 46056009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 112
Target Start/End: Original strand, 4966156 - 4966231
Alignment:
Q  37 tataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagt 112  Q
    ||||| ||||||||||||||  ||  | | ||||||| ||||||| | ||||||||||||||||||| ||||||||    
T  4966156 tataagctgttttcataagccatcctgaagagcttatggaaataaactgaaaacaacttatggacatatcataagt 4966231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 138
Target Start/End: Original strand, 46082066 - 46082137
Alignment:
Q  67 agcttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccataaactctttttaacagt 138  Q
    |||||||  |||||||| ||||||||||||||| ||||||||||||| | | ||||| ||||  ||||||||    
T  46082066 agcttatgaaaataagctgaaaacaacttatggtcatgtcataagttgttttcataagctctcattaacagt 46082137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 128
Target Start/End: Complemental strand, 3501008 - 3500946
Alignment:
Q  66 aagcttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccataaactct 128  Q
    |||| ||| ||||||||| ||||||| || ||| |||||||||||||||| ||||||| ||||    
T  3501008 aagcgtatggaaataagctgaaaacagctgatgtacatgtcataagttatttccataagctct 3500946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 113
Target Start/End: Complemental strand, 12234929 - 12234883
Alignment:
Q  67 agcttatcgaaataagccgaaaacaacttatggacatgtcataagtt 113  Q
    ||||||| ||||||||| ||||||| ||||| |||||||||||||||    
T  12234929 agcttatggaaataagctgaaaacagcttatagacatgtcataagtt 12234883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 128
Target Start/End: Original strand, 29287265 - 29287318
Alignment:
Q  75 gaaataagccgaaaacaacttatggacatgtcataagttatgtccataaactct 128  Q
    |||||||||| ||||||| |||||||||||||||||| ||| | ||||| ||||    
T  29287265 gaaataagccaaaaacaatttatggacatgtcataagctattttcataagctct 29287318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 110
Target Start/End: Original strand, 39345503 - 39345544
Alignment:
Q  69 cttatcgaaataagccgaaaacaacttatggacatgtcataa 110  Q
    ||||| ||||||||| |||| |||||||||||||||||||||    
T  39345503 cttatggaaataagctgaaagcaacttatggacatgtcataa 39345544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 48157195 - 48157114
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagtt 113  Q
    ||||||||||  |||||||| ||||| |   ||| | ||||| ||||||||| ||||||| |||||||||||| ||||||||    
T  48157195 taagctataatttgttttcacaagctattcgggagatcttatggaaataagctgaaaacagcttatggacatggcataagtt 48157114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 113
Target Start/End: Original strand, 8341876 - 8341904
Alignment:
Q  85 gaaaacaacttatggacatgtcataagtt 113  Q
    |||||||||||||||||||||||||||||    
T  8341876 gaaaacaacttatggacatgtcataagtt 8341904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 96
Target Start/End: Original strand, 25596032 - 25596092
Alignment:
Q  36 ctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaactta 96  Q
    ||||||||| |||||||||||| ||| ||| |||||||  |||||||  ||||||||||||    
T  25596032 ctataaactcttttcataagctatcttggagagcttatgaaaataagttgaaaacaactta 25596092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 111
Target Start/End: Original strand, 30496711 - 30496779
Alignment:
Q  44 tgttttcataagctgtctcggaaagcttatcgaaa-taagccgaaaacaacttatggacatgtcataag 111  Q
    ||||||||||| ||||| |||| ||||||| |||| ||||| |||||||||||| || |||| ||||||    
T  30496711 tgttttcataaactgtcccggatagcttattgaaaataagctgaaaacaacttacgggcatgccataag 30496779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 35267392 - 35267436
Alignment:
Q  67 agcttatcgaaataagccgaaaacaacttatggacatgtcataag 111  Q
    ||||||| ||||||||| ||||||||| |||| ||||||||||||    
T  35267392 agcttatagaaataagctgaaaacaacctatgaacatgtcataag 35267436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 37 - 127
Target Start/End: Complemental strand, 53673728 - 53673638
Alignment:
Q  37 tataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccataaactc 127  Q
    ||||||||||||||||||||| ||| ||| |||||||  |||||||| ||||||||||||||||||| | ||| ||| | |||||||||||    
T  53673728 tataaactgttttcataagctatcttggagagcttatgtaaataagctgaaaacaacttatggacatatgatatgttgtttccataaactc 53673638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 266
Target Start/End: Original strand, 54580562 - 54580626
Alignment:
Q  202 cttacaaatccatcctctgagatatcaatgagctgataatcagtgcgattaacatgaggaacctg 266  Q
    |||||||||||||| || ||||||||||| | |||||||||||| ||||| ||||||||||||||    
T  54580562 cttacaaatccatcttcagagatatcaatcaactgataatcagtacgattcacatgaggaacctg 54580626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 111
Target Start/End: Original strand, 23819096 - 23819163
Alignment:
Q  44 tgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataag 111  Q
    |||||||||||||| ||| | | ||||||| ||||||||  |||||||||||||||||||||||||||    
T  23819096 tgttttcataagctatcttgaagagcttatagaaataagatgaaaacaacttatggacatgtcataag 23819163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 202 - 265
Target Start/End: Original strand, 45277554 - 45277617
Alignment:
Q  202 cttacaaatccatcctctgagatatcaatgagctgataatcagtgcgattaacatgaggaacct 265  Q
    |||||||||||||| || ||||||||||||||||| |||||||| ||||| || ||||||||||    
T  45277554 cttacaaatccatcttcagagatatcaatgagctggtaatcagtacgattcacgtgaggaacct 45277617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 110
Target Start/End: Complemental strand, 34398756 - 34398682
Alignment:
Q  36 ctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataa 110  Q
    |||||| ||||||||||||||  ||  ||| ||||||| ||| ||||||||||||||||||||| ||||||||||    
T  34398756 ctataagctgttttcataagccatcatggagagcttatggaagtaagccgaaaacaacttatgggcatgtcataa 34398682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 117
Target Start/End: Complemental strand, 55547111 - 55547034
Alignment:
Q  40 aaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagttatgt 117  Q
    |||||||||||||||||| |   | |||| |||| |||||||||  |||||||||||| |||||||||||||||||||    
T  55547111 aaactgttttcataagctatgctgaaaagtttatggaaataagctaaaaacaacttatagacatgtcataagttatgt 55547034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 7694085 - 7694009
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcat 108  Q
    |||||||||| ||||||||||||| | ||  ||| || |||| ||||||||| |||||||||||||| |||||||||    
T  7694085 taagctataagctgttttcataagttatcctggagagtttatggaaataagctgaaaacaacttatgaacatgtcat 7694009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 95
Target Start/End: Complemental strand, 18628618 - 18628555
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaactt 95  Q
    |||| ||||||||||||||||||| | ||| ||| ||||||| ||||||||| |||||||||||    
T  18628618 taagttataaactgttttcataagttatcttggagagcttatggaaataagctgaaaacaactt 18628555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 110
Target Start/End: Original strand, 52754595 - 52754672
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataa 110  Q
    |||||||||| ||||||||||||||| | ||||||| ||||  ||||||||| |||| || |||||||||| |||||||    
T  52754595 taagctataagctgttttcataagctatttcggaaatctta-ggaaataagctgaaagcagcttatggacacgtcataa 52754672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 43824309 - 43824357
Alignment:
Q  63 ggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataag 111  Q
    ||||||||||| ||||||||| |||||||||||||| ||||| ||||||    
T  43824309 ggaaagcttatggaaataagctgaaaacaacttatgaacatgccataag 43824357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 45128385 - 45128313
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatg 104  Q
    ||||||||||| ||||||||||| |||||    ||||||||| ||||||||| ||||||| || |||||||||    
T  45128385 taagctataaattgttttcataaactgtcctataaagcttatggaaataagctgaaaacagctcatggacatg 45128313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 98
Target Start/End: Original strand, 46110201 - 46110264
Alignment:
Q  35 gctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatg 98  Q
    ||||||||||||||||||||||| |    || ||||||| ||||||||| ||||||||||||||    
T  46110201 gctataaactgttttcataagctatgattgagagcttatagaaataagctgaaaacaacttatg 46110264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 113
Target Start/End: Original strand, 2996580 - 2996649
Alignment:
Q  44 tgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagtt 113  Q
    |||||||||||||| ||| ||| ||| |||  |||||||  ||||| | |||||||||||||||||||||    
T  2996580 tgttttcataagctatcttggagagcgtatgaaaataagttgaaaaaagcttatggacatgtcataagtt 2996649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 113
Target Start/End: Original strand, 4471175 - 4471244
Alignment:
Q  44 tgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagtt 113  Q
    |||||||||||||| ||| | ||||||| |  |||||||  ||| |||||||||||| ||||||||||||    
T  4471175 tgttttcataagctatcttgaaaagcttctgaaaataagttgaatacaacttatggatatgtcataagtt 4471244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 128
Target Start/End: Complemental strand, 27123392 - 27123331
Alignment:
Q  67 agcttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccataaactct 128  Q
    ||||||| ||||||||  ||||||||||||  ||||||||||||||| | ||||||| ||||    
T  27123392 agcttatggaaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctct 27123331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 109
Target Start/End: Complemental strand, 28300374 - 28300297
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcata 109  Q
    ||||||||||||| |||||||| ||| ||| | | |||||||  |||||||  |||||||||||| | ||||||||||    
T  28300374 taagctataaactattttcataggctatcttgaagagcttatgaaaataagttgaaaacaacttaagaacatgtcata 28300297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 28615526 - 28615599
Alignment:
Q  40 aaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagtt 113  Q
    |||||||||| ||| ||| ||| ||| ||||||| ||||||||  ||||| | || ||||||||||||||||||    
T  28615526 aaactgtttttataggctatcttggagagcttatggaaataaggtgaaaatatctaatggacatgtcataagtt 28615599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 29467661 - 29467620
Alignment:
Q  70 ttatcgaaataagccgaaaacaacttatggacatgtcataag 111  Q
    |||| ||||||||| ||||||| |||||||||||||||||||    
T  29467661 ttatggaaataagctgaaaacagcttatggacatgtcataag 29467620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 46201386 - 46201427
Alignment:
Q  75 gaaataagccgaaaacaacttatggacatgtcataagttatg 116  Q
    ||||||||| ||||||||| |||| |||||||||||||||||    
T  46201386 gaaataagctgaaaacaacctatgaacatgtcataagttatg 46201427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 50800104 - 50800024
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagtt 113  Q
    |||||||||| |||||||| |||||| ||  ||| | ||| | ||||||||| ||||||| ||||| |||||||||||||||    
T  50800104 taagctataagctgttttcttaagctatcatggagaactt-tggaaataagctgaaaacagcttatagacatgtcataagtt 50800024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 1137742 - 1137786
Alignment:
Q  67 agcttatcgaaataagccgaaaacaacttatggacatgtcataag 111  Q
    ||||||| ||||||| | |||||||||||||| ||||||||||||    
T  1137742 agcttatggaaataaactgaaaacaacttatgaacatgtcataag 1137786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 123
Target Start/End: Complemental strand, 2874684 - 2874608
Alignment:
Q  47 tttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccataa 123  Q
    ||||||||||| ||  |||  |||||| ||||||||| ||||| |  |||||||||||||||||||| | |||||||    
T  2874684 tttcataagctatccaggagtgcttatggaaataagcggaaaatagattatggacatgtcataagttgtttccataa 2874608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 5131290 - 5131254
Alignment:
Q  67 agcttatcgaaataagccgaaaacaacttatggacat 103  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  5131290 agcttatggaaataagctgaaaacaacttatggacat 5131254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 19304964 - 19305000
Alignment:
Q  75 gaaataagccgaaaacaacttatggacatgtcataag 111  Q
    |||| |||| |||||||||||||||||||||||||||    
T  19304964 gaaacaagctgaaaacaacttatggacatgtcataag 19305000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 46401303 - 46401351
Alignment:
Q  76 aaataagccgaaaacaacttatggacatgtcataagttatgtccataaa 124  Q
    |||||||| ||| |||||||||| |||||||||||||| ||| ||||||    
T  46401303 aaataagctgaatacaacttatgaacatgtcataagttgtgtacataaa 46401351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 128
Target Start/End: Complemental strand, 46415823 - 46415771
Alignment:
Q  76 aaataagccgaaaacaacttatggacatgtcataagttatgtccataaactct 128  Q
    |||| ||| ||||||||||||||||||||||||| ||| | | ||||||||||    
T  46415823 aaattagctgaaaacaacttatggacatgtcataggttgtttgcataaactct 46415771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 13000491 - 13000402
Alignment:
Q  40 aaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccataaactctt 129  Q
    |||||| |||||||| |||||  | ||||||||| ||||||||| ||||||||||| ||||||||||||||||| |  ||||||||||||    
T  13000491 aaactgctttcataaactgtcatgcaaagcttatggaaataagctgaaaacaacttgtggacatgtcataagttgttaccataaactctt 13000402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 128
Target Start/End: Complemental strand, 4055679 - 4055595
Alignment:
Q  44 tgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccataaactct 128  Q
    |||||||||||||| |||| || ||||||  ||||||||| |||||||  |||||||||||||||||||||| || |||||||||    
T  4055679 tgttttcataagctatctcagagagcttaaggaaataagctgaaaacagtttatggacatgtcataagttatttctataaactct 4055595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 25869303 - 25869245
Alignment:
Q  70 ttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccataaactct 128  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||| |||||| |||||    
T  25869303 ttatggaaataagctgaaaacaacttatggacatgtcataagttatttccatagactct 25869245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 32 - 109
Target Start/End: Complemental strand, 28769414 - 28769337
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcata 109  Q
    |||||||||| ||||||||||||||| | | ||| || |||| ||||||||| ||||||||||||||||||| |||||    
T  28769414 taagctataagctgttttcataagctattttggagagtttatggaaataagctgaaaacaacttatggacatatcata 28769337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 102
Target Start/End: Original strand, 8062324 - 8062394
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggaca 102  Q
    |||||||||| ||||||||||||||| |||  || || |||| ||||||||| ||||||| ||||||||||    
T  8062324 taagctataagctgttttcataagctatcttagagagattatggaaataagctgaaaacatcttatggaca 8062394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 110
Target Start/End: Original strand, 8578572 - 8578646
Alignment:
Q  36 ctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataa 110  Q
    |||||| ||||||||||||||| || |||| ||||| | ||||||||||||||| | ||| | ||||||||||||    
T  8578572 ctataagctgttttcataagctatcccggagagcttgtagaaataagccgaaaatagcttctagacatgtcataa 8578646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 14949899 - 14949957
Alignment:
Q  70 ttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccataaactct 128  Q
    |||| ||||||||| ||||||| ||||||||||||||||||||||| | ||||| ||||    
T  14949899 ttatagaaataagctgaaaacagcttatggacatgtcataagttattttcataagctct 14949957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 126
Target Start/End: Complemental strand, 41620322 - 41620272
Alignment:
Q  76 aaataagccgaaaacaacttatggacatgtcataagttatgtccataaact 126  Q
    |||||||| |||||||||||||||||||||||||| || | ||||||||||    
T  41620322 aaataagcggaaaacaacttatggacatgtcataatttgtttccataaact 41620272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 113
Target Start/End: Complemental strand, 779132 - 779055
Alignment:
Q  36 ctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagtt 113  Q
    ||||||||||||||||||| || ||| ||| ||  || | |||||||  |||||||||||||| ||||||||||||||    
T  779132 ctataaactgttttcataaactatcttggagagtgtaccaaaataagatgaaaacaacttatgaacatgtcataagtt 779055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 138
Target Start/End: Complemental strand, 11569527 - 11569426
Alignment:
Q  37 tataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccataaactctttttaaca 136  Q
    ||||| ||||||||||||||| ||  ||| || || |  |||||||| |||||||||||||| |||||||||||| | | ||||||| |||| || ||||    
T  11569527 tataagctgttttcataagctatcatggagagattttgaaaataagctgaaaacaacttatgtacatgtcataagctgtttccataagctctcttaaaca 11569428  T
Q  137 gt 138  Q
    ||    
T  11569427 gt 11569426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 121
Target Start/End: Original strand, 31705080 - 31705169
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccat 121  Q
    |||||||||| ||||||||||||||||||   || || |||| ||||||||| ||||||| |||||| |||| || |||| ||| |||||    
T  31705080 taagctataagctgttttcataagctgtccttgagagtttatggaaataagctgaaaacagcttatgcacatctcttaagctatttccat 31705169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 115
Target Start/End: Original strand, 38421306 - 38421342
Alignment:
Q  79 taagccgaaaacaacttatggacatgtcataagttat 115  Q
    ||||| |||||||||||||||||||||||||||||||    
T  38421306 taagctgaaaacaacttatggacatgtcataagttat 38421342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 111
Target Start/End: Original strand, 11795087 - 11795166
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataag 111  Q
    |||| ||||| ||| ||||||||||| |   ||| ||||||| ||||||||| |||||||  ||||||||||||||||||    
T  11795087 taagttataagctgatttcataagctattatggagagcttatggaaataagctgaaaacaggttatggacatgtcataag 11795166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 111
Target Start/End: Original strand, 12361187 - 12361266
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataag 111  Q
    |||||||||| ||||||||||||| | |   ||| |||| || ||||||||  ||||||| |||||||||||||||||||    
T  12361187 taagctataagctgttttcataagttattcaggagagctaatggaaataagttgaaaacagcttatggacatgtcataag 12361266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 111
Target Start/End: Original strand, 12851171 - 12851250
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataag 111  Q
    ||||||| ||| |||||||||||||| ||   || |||||||  |||||||||||||||| |||||| |||||| |||||    
T  12851171 taagctagaaattgttttcataagctttccttgagagcttatgaaaataagccgaaaacatcttatgaacatgttataag 12851250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 111
Target Start/End: Original strand, 20672753 - 20672824
Alignment:
Q  40 aaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataag 111  Q
    |||||||||| ||||||| ||  ||| |||||||  |||||||| ||||||| |||||| ||||||||||||    
T  20672753 aaactgtttttataagctatcctggagagcttatgaaaataagctgaaaacagcttatgaacatgtcataag 20672824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 91
Target Start/End: Complemental strand, 38036187 - 38036128
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaaca 91  Q
    |||||||||||||||||| || |||| ||| ||| ||||||| ||||||||| |||||||    
T  38036187 taagctataaactgttttgattagctatcttggagagcttattgaaataagctgaaaaca 38036128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 124
Target Start/End: Complemental strand, 39551283 - 39551192
Alignment:
Q  33 aagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccataaa 124  Q
    |||||||||  |||||||||||||| ||  ||| |||||||  |||||||   |||||| ||| ||||||||||||||||| | ||||||||    
T  39551283 aagctataagttgttttcataagctttcctggagagcttataaaaataagttaaaaacagcttttggacatgtcataagttgtttccataaa 39551192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 42215143 - 42215084
Alignment:
Q  46 ttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgt 105  Q
    |||||||||||| ||| ||| |||||||  |||||||| |||||||||||||| ||||||    
T  42215143 ttttcataagctatcttggagagcttatgtaaataagctgaaaacaacttatgaacatgt 42215084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 109
Target Start/End: Original strand, 6950352 - 6950394
Alignment:
Q  67 agcttatcgaaataagccgaaaacaacttatggacatgtcata 109  Q
    ||||||| ||||||||| ||||||||||||| |||||||||||    
T  6950352 agcttatggaaataagctgaaaacaacttatcgacatgtcata 6950394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 111
Target Start/End: Complemental strand, 30277315 - 30277241
Alignment:
Q  37 tataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataag 111  Q
    ||||| ||||||||||||||| ||   || || |||| ||||||||| ||||||||||||||| |||||| ||||    
T  30277315 tataagctgttttcataagctatcctagagagtttatggaaataagctgaaaacaacttatggccatgtcctaag 30277241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 115
Target Start/End: Original strand, 9572919 - 9572948
Alignment:
Q  86 aaaacaacttatggacatgtcataagttat 115  Q
    ||||||||||||||||||||||||||||||    
T  9572919 aaaacaacttatggacatgtcataagttat 9572948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 113
Target Start/End: Original strand, 33553247 - 33553316
Alignment:
Q  44 tgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagtt 113  Q
    |||||||||||||| ||| | | ||||||| ||||||||| |  |||| |||| ||||||||||||||||    
T  33553247 tgttttcataagctatcttgaagagcttatggaaataagctgggaacagcttagggacatgtcataagtt 33553316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 113
Target Start/End: Complemental strand, 2595027 - 2594991
Alignment:
Q  77 aataagccgaaaacaacttatggacatgtcataagtt 113  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  2595027 aataagctgaaaacaacttatgaacatgtcataagtt 2594991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 123
Target Start/End: Original strand, 4558796 - 4558884
Alignment:
Q  35 gctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccataa 123  Q
    ||||||| |||||| |||||||| ||   || ||||||| ||||||| |  |||||||||||| ||||  ||||||||||| |||||||    
T  4558796 gctataagctgtttccataagctatcctagagagcttatggaaataaactaaaaacaacttatagacacatcataagttatttccataa 4558884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 4560532 - 4560588
Alignment:
Q  67 agcttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccataa 123  Q
    ||||||||||||||| | ||||||| ||||  ||||||| ||||||||| |||||||    
T  4560532 agcttatcgaaataatctgaaaacagcttactgacatgttataagttatttccataa 4560588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 30389094 - 30389170
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcat 108  Q
    |||||||||  ||||||||||||||| ||   || | |||||  |||||||| |||||||||||||| |||||||||    
T  30389094 taagctatacgctgttttcataagctttcctagagaacttatgaaaataagctgaaaacaacttatgaacatgtcat 30389170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 30918122 - 30918174
Alignment:
Q  46 ttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatg 98  Q
    |||||||||| | ||| ||| ||||||| ||||||||| ||||||||||||||    
T  30918122 ttttcataagttttcttggagagcttatggaaataagctgaaaacaacttatg 30918174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 41606943 - 41606899
Alignment:
Q  67 agcttatcgaaataagccgaaaacaacttatggacatgtcataag 111  Q
    ||||||| ||||||||| ||||||||||| || ||||||||||||    
T  41606943 agcttatggaaataagctgaaaacaacttttgaacatgtcataag 41606899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 32 - 123
Target Start/End: Complemental strand, 52025 - 51936
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccataa 123  Q
    |||||||||| |||||||||| || | ||| ||||| |||| |||||||||  |||||||||||||||||||||||||| |||| |||||||    
T  52025 taagctataagctgttttcattagttatcttggaaaacttaccgaaataag--gaaaacaacttatggacatgtcataaattatttccataa 51936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 34)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 9027608 - 9027671
Alignment:
Q  67 agcttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccataaactcttt 130  Q
    |||||||  |||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||    
T  9027608 agcttatgaaaataagctgaaaacaacttatggacatgtcataagttatttccataagctcttt 9027671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 9668048 - 9667979
Alignment:
Q  44 tgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagtt 113  Q
    ||||||||||| |||| ||||| ||||||| ||||||||  ||||||| |||||||||||||||||||||    
T  9668048 tgttttcataaactgtttcggagagcttatggaaataagttgaaaacagcttatggacatgtcataagtt 9667979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 108
Target Start/End: Original strand, 31583686 - 31583750
Alignment:
Q  44 tgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcat 108  Q
    |||||||||||||| || || ||||||||| ||||||||  ||||||||||||||||||||||||    
T  31583686 tgttttcataagctatcccgaaaagcttatggaaataagttgaaaacaacttatggacatgtcat 31583750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 111
Target Start/End: Complemental strand, 2161000 - 2160933
Alignment:
Q  44 tgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataag 111  Q
    ||||||| |||||||||| |||||| |||| ||||||||  |||||||||||||||||||||| ||||    
T  2161000 tgttttcctaagctgtcttggaaagattatggaaataagttgaaaacaacttatggacatgtcgtaag 2160933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 113
Target Start/End: Complemental strand, 281923 - 281842
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagtt 113  Q
    |||||||||| |||| |||||||||| ||   || |||| || ||||||||| ||||||||||||| |||||||||||||||    
T  281923 taagctataagctgtgttcataagctatcctagagagctcatggaaataagctgaaaacaacttatagacatgtcataagtt 281842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 111
Target Start/End: Complemental strand, 3168336 - 3168257
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataag 111  Q
    ||||||||||||||||||| |||||| ||  ||| ||||||  ||||||||| ||||||| |  ||||||||||||||||    
T  3168336 taagctataaactgttttcttaagctatcctggagagcttaaggaaataagctgaaaacagccgatggacatgtcataag 3168257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 19275707 - 19275628
Alignment:
Q  36 ctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagttat 115  Q
    |||||||||||||||||||||| ||  | | ||||||| ||||||| |||||| || ||| |||||||||||||| ||||    
T  19275707 ctataaactgttttcataagctatcatgaagagcttatggaaataaaccgaaatcagcttgtggacatgtcataaattat 19275628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 123
Target Start/End: Complemental strand, 28088297 - 28088207
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccataa 123  Q
    |||||||||||||||||||||||||| ||  ||| |||| || |||||||||  |||||||| ||| ||||||| ||||||| | |||||||    
T  28088297 taagctataaactgttttcataagctatcatggagagctcatggaaataagctcaaaacaacctatagacatgt-ataagttgtttccataa 28088207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 113
Target Start/End: Original strand, 6536977 - 6537023
Alignment:
Q  67 agcttatcgaaataagccgaaaacaacttatggacatgtcataagtt 113  Q
    ||||||| ||||||||| |||||||||||||| ||||||||||||||    
T  6536977 agcttatggaaataagctgaaaacaacttatgaacatgtcataagtt 6537023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 113
Target Start/End: Complemental strand, 20377952 - 20377914
Alignment:
Q  75 gaaataagccgaaaacaacttatggacatgtcataagtt 113  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  20377952 gaaataagccgaaaacaacttatagacatgtcataagtt 20377914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 109
Target Start/End: Complemental strand, 27909678 - 27909636
Alignment:
Q  67 agcttatcgaaataagccgaaaacaacttatggacatgtcata 109  Q
    ||||||| ||||||||| |||||||||||||||||||||||||    
T  27909678 agcttatggaaataagctgaaaacaacttatggacatgtcata 27909636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 124
Target Start/End: Original strand, 33887831 - 33887917
Alignment:
Q  38 ataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccataaa 124  Q
    |||||||||||||||||||| ||  | || |||||| ||||||||  ||||||||||| || |||||||||||| ||| | ||||||    
T  33887831 ataaactgttttcataagctatcctgaaatgcttatggaaataagttgaaaacaacttgtgaacatgtcataagctattttcataaa 33887917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 121
Target Start/End: Complemental strand, 733220 - 733163
Alignment:
Q  64 gaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccat 121  Q
    |||| ||||| |||||| || ||||||||||| ||||||||||||||||||| |||||    
T  733220 gaaaacttatagaaatatgctgaaaacaacttgtggacatgtcataagttatttccat 733163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 113
Target Start/End: Original strand, 2112207 - 2112276
Alignment:
Q  44 tgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagtt 113  Q
    ||||||||||| || |||  ||  |||||| ||||||| |||||||||||||||| ||||||||||||||    
T  2112207 tgttttcataaactatcttagagtgcttatagaaataaaccgaaaacaacttatgaacatgtcataagtt 2112276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 113
Target Start/End: Original strand, 10031739 - 10031808
Alignment:
Q  44 tgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagtt 113  Q
    |||||| ||||||||||| ||| ||||||  ||||||||  |||||||||||||||| ||||| ||||||    
T  10031739 tgtttttataagctgtcttggagagcttaaggaaataagatgaaaacaacttatggatatgtcgtaagtt 10031808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 4420652 - 4420716
Alignment:
Q  46 ttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataa 110  Q
    ||||| |||||| ||| ||| ||||||| ||||||||| ||||||| |||||| |||||||||||    
T  4420652 ttttcctaagctatcttggagagcttatggaaataagctgaaaacagcttatgaacatgtcataa 4420716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 121
Target Start/End: Original strand, 6647387 - 6647471
Alignment:
Q  37 tataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccat 121  Q
    ||||| ||||||||||||||| |||  || |||||||  |||||||  ||||||| |||||| |||||||||||| ||| |||||    
T  6647387 tataatctgttttcataagctatcttagagagcttatgaaaataagttgaaaacatcttatgaacatgtcataagctatttccat 6647471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 7785784 - 7785740
Alignment:
Q  67 agcttatcgaaataagccgaaaacaacttatggacatgtcataag 111  Q
    ||||||| ||||||||| ||||||||||||| |||||||||||||    
T  7785784 agcttatggaaataagctgaaaacaacttatagacatgtcataag 7785740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 111
Target Start/End: Original strand, 283090 - 283169
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataag 111  Q
    |||||||||| |||||| |||| ||| |||  | |||||||| ||||||||| ||||| |  ||||||||||||||||||    
T  283090 taagctataatctgtttgcataggctatcttcggaagcttatagaaataagctgaaaatagtttatggacatgtcataag 283169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 129
Target Start/End: Original strand, 2455819 - 2455902
Alignment:
Q  46 ttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccataaactctt 129  Q
    |||||||||||| ||| ||| ||||||| ||||||||  ||||| |  |||||| ||||||||||||| | ||||||| |||||    
T  2455819 ttttcataagctatcttggagagcttatggaaataagttgaaaatagtttatgggcatgtcataagttgtttccataagctctt 2455902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 129
Target Start/End: Original strand, 2514711 - 2514794
Alignment:
Q  46 ttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccataaactctt 129  Q
    |||||||||||||||  ||| | ||| | ||| |||| |||||||| |||||| | |||||||||||||| |||||| ||||||    
T  2514711 ttttcataagctgtcctggagatcttttggaagtaagacgaaaacagcttatgaatatgtcataagttatttccatacactctt 2514794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 128
Target Start/End: Complemental strand, 10616603 - 10616520
Alignment:
Q  45 gttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccataaactct 128  Q
    ||||| ||||||| | | ||| |||||||  |||||||| ||| |||||||| |||||||||||||||| | ||||||| ||||    
T  10616603 gttttaataagctattttggagagcttataaaaataagctgaacacaacttacggacatgtcataagttgtttccataagctct 10616520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 103
Target Start/End: Original strand, 20351155 - 20351214
Alignment:
Q  44 tgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacat 103  Q
    |||||||||||||| ||||||| |||||||  |||||||| ||||||||| || ||||||    
T  20351155 tgttttcataagctatctcggatagcttataaaaataagctgaaaacaacataaggacat 20351214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 111
Target Start/End: Original strand, 34939755 - 34939818
Alignment:
Q  48 ttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataag 111  Q
    |||||||||| ||  ||| || |||| ||||||||| |||||||| ||||||||||||||||||    
T  34939755 ttcataagctatcctggagagtttatggaaataagctgaaaacaatttatggacatgtcataag 34939818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 113
Target Start/End: Original strand, 30863276 - 30863322
Alignment:
Q  67 agcttatcgaaataagccgaaaacaacttatggacatgtcataagtt 113  Q
    ||||||| ||| ||||| |||||||||||||| ||||||||||||||    
T  30863276 agcttatagaagtaagctgaaaacaacttatgtacatgtcataagtt 30863322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 34939546 - 34939604
Alignment:
Q  70 ttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccataaactct 128  Q
    |||| ||||||||| |||||||||||| |||| ||||||||||| | ||||||| ||||    
T  34939546 ttatggaaataagctgaaaacaacttacggacgtgtcataagttgtttccataagctct 34939604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 128
Target Start/End: Complemental strand, 2034478 - 2034425
Alignment:
Q  75 gaaataagccgaaaacaacttatggacatgtcataagttatgtccataaactct 128  Q
    ||||||||| ||||||| |||||||| |||||||||| | | ||||||||||||    
T  2034478 gaaataagctgaaaacagcttatggaaatgtcataagctgtttccataaactct 2034425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 2167195 - 2167154
Alignment:
Q  70 ttatcgaaataagccgaaaacaacttatggacatgtcataag 111  Q
    |||| ||||||||| ||||||||||||||||||| |||||||    
T  2167195 ttatggaaataagctgaaaacaacttatggacatatcataag 2167154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 2178828 - 2178787
Alignment:
Q  70 ttatcgaaataagccgaaaacaacttatggacatgtcataag 111  Q
    |||| ||||||||| ||||||||||||||||||| |||||||    
T  2178828 ttatggaaataagctgaaaacaacttatggacatatcataag 2178787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 128
Target Start/End: Complemental strand, 2460191 - 2460130
Alignment:
Q  67 agcttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccataaactct 128  Q
    ||||||| ||||||||  ||||||||||||  ||||||||||||||| | ||||||| ||||    
T  2460191 agcttatggaaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctct 2460130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 4006709 - 4006790
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagtt 113  Q
    ||||||||||  |||||||||||||| || | || || ||||  |||||||| ||||| ||||||||||||| || ||||||    
T  4006709 taagctataagttgttttcataagctatccctgagaggttatgaaaataagctgaaaataacttatggacatatcgtaagtt 4006790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 111
Target Start/End: Original strand, 1275144 - 1275224
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccg-aaaacaacttatggacatgtcataag 111  Q
    |||||||||| ||||||||||| | | ||  ||| ||||||| ||||||||| | |||||||| || ||||||||||||||    
T  1275144 taagctataagctgttttcatatgttatcctggagagcttatggaaataagctgaaaaacaacgtaaggacatgtcataag 1275224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 113
Target Start/End: Original strand, 3528811 - 3528879
Alignment:
Q  45 gttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagtt 113  Q
    |||||||| | || ||| ||| |||||||  |||||||  |||||||| ||||||||||||||||||||    
T  3528811 gttttcatgaactatcttggagagcttatgaaaataagatgaaaacaagttatggacatgtcataagtt 3528879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 105
Target Start/End: Complemental strand, 32386176 - 32386108
Alignment:
Q  37 tataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgt 105  Q
    ||||| |||||||||| || | ||  |||||||||||  || ||||| |||||||||||||||||||||    
T  32386176 tataagctgttttcattagttatcctggaaagcttatgaaagtaagctgaaaacaacttatggacatgt 32386108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 129
Target Start/End: Original strand, 32821806 - 32821901
Alignment:
Q  34 agctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccataaactctt 129  Q
    |||||||||||||||||||||||| ||    | ||||||| ||||||| | ||||||| ||||||||||||||||||||| | || ||||||||||    
T  32821806 agctataaactgttttcataagctatcctaaagagcttatagaaataaactgaaaacagcttatggacatgtcataagttgtttctataaactctt 32821901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 113
Target Start/End: Complemental strand, 34652097 - 34652030
Alignment:
Q  46 ttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagtt 113  Q
    |||||||||||| ||| ||| ||||||| ||||||||  ||||||| |||||||||||||||||||||    
T  34652097 ttttcataagctatcttggagagcttatggaaataagttgaaaacagcttatggacatgtcataagtt 34652030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 120
Target Start/End: Original strand, 36852472 - 36852555
Alignment:
Q  37 tataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtcca 120  Q
    ||||||||||||||||||||| ||| ||| ||||||| ||||||| | ||||| |  |||| ||||||||||||||||| ||||    
T  36852472 tataaactgttttcataagctatcttggagagcttatggaaataatctgaaaatagtttatagacatgtcataagttatatcca 36852555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 129
Target Start/End: Complemental strand, 9878714 - 9878660
Alignment:
Q  75 gaaataagccgaaaacaacttatggacatgtcataagttatgtccataaactctt 129  Q
    |||||||| |||||||||||||||||||||||||||||| | ||||||| |||||    
T  9878714 gaaataagtcgaaaacaacttatggacatgtcataagttgtttccataagctctt 9878660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 113
Target Start/End: Original strand, 7282999 - 7283072
Alignment:
Q  40 aaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagtt 113  Q
    |||||||||||||||||| | | ||| ||||||| || |||||  ||||||||||||||||||| |||||||||    
T  7282999 aaactgttttcataagctatgtgggagagcttatggatataagatgaaaacaacttatggacatatcataagtt 7283072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 43065513 - 43065444
Alignment:
Q  44 tgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagtt 113  Q
    |||||||||||| | ||  ||| ||||||| ||||||||| |||||||| ||||||||||||||||||||    
T  43065513 tgttttcataagttatcgtggagagcttattgaaataagctgaaaacaatttatggacatgtcataagtt 43065444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 41 - 113
Target Start/End: Complemental strand, 1939398 - 1939326
Alignment:
Q  41 aactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagtt 113  Q
    ||||||||||||||||| |   ||| ||||||| ||||||||  ||||||| |||||||||||||||||||||    
T  1939398 aactgttttcataagctatactggagagcttatggaaataagttgaaaacagcttatggacatgtcataagtt 1939326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 33 - 113
Target Start/End: Original strand, 9556235 - 9556315
Alignment:
Q  33 aagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagtt 113  Q
    ||||||||||||||||||||||||| ||   ||||||||||  |||||||  |||| | ||||||||||||||||| ||||    
T  9556235 aagctataaactgttttcataagctatcctagaaagcttatgaaaataagttgaaatctacttatggacatgtcattagtt 9556315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 29316846 - 29316771
Alignment:
Q  36 ctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataag 111  Q
    |||||| |||||||||| |||| ||| ||| | ||||| ||||||||| ||||| |||||||| ||||||||||||    
T  29316846 ctataagctgttttcatcagctatcttggagaacttatggaaataagctgaaaagaacttatgaacatgtcataag 29316771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 129
Target Start/End: Complemental strand, 14299671 - 14299609
Alignment:
Q  67 agcttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccataaactctt 129  Q
    ||||||| ||||||||| ||||||||  |||||| |||||||||||| | |||||||||||||    
T  14299671 agcttatagaaataagctgaaaacaatgtatggatatgtcataagttgtttccataaactctt 14299609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 113
Target Start/End: Complemental strand, 30538204 - 30538167
Alignment:
Q  76 aaataagccgaaaacaacttatggacatgtcataagtt 113  Q
    |||||||| |||||||||||||||||||||||||||||    
T  30538204 aaataagctgaaaacaacttatggacatgtcataagtt 30538167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 113
Target Start/End: Complemental strand, 41809288 - 41809239
Alignment:
Q  64 gaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagtt 113  Q
    |||||||||| |||||||||  ||||||||||||| ||||||||||||||    
T  41809288 gaaagcttatggaaataagctaaaaacaacttatgaacatgtcataagtt 41809239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 43911062 - 43910993
Alignment:
Q  44 tgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagtt 113  Q
    |||||||| ||||| ||| ||||||||| |   ||||||| |||||||||||||| ||||||||||||||    
T  43911062 tgttttcaaaagctatcttggaaagcttgtgataataagctgaaaacaacttatgaacatgtcataagtt 43910993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 110
Target Start/End: Original strand, 16867736 - 16867812
Alignment:
Q  34 agctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataa 110  Q
    ||||||||  |||||||| ||||| ||| ||| ||||||| ||||||||  |||||||||||||| | |||||||||    
T  16867736 agctataaggtgttttcacaagctatcttggagagcttatggaaataagttgaaaacaacttatgaatatgtcataa 16867812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 25796240 - 25796192
Alignment:
Q  67 agcttatcgaaataagccgaaaacaacttatggacatgtcataagttat 115  Q
    ||||||| ||||||||| |||||||||||||||| |||| |||||||||    
T  25796240 agcttattgaaataagctgaaaacaacttatggatatgtaataagttat 25796192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 28677699 - 28677655
Alignment:
Q  67 agcttatcgaaataagccgaaaacaacttatggacatgtcataag 111  Q
    ||||||| |||||||||||||||||||||||| | ||||||||||    
T  28677699 agcttatggaaataagccgaaaacaacttatgaaaatgtcataag 28677655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 108
Target Start/End: Complemental strand, 35379079 - 35379015
Alignment:
Q  44 tgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcat 108  Q
    |||||||||||||| ||| ||| |||||||  |||||||| |||||||||||||| ||| |||||    
T  35379079 tgttttcataagctatcttggagagcttatgaaaataagctgaaaacaacttatgaacaagtcat 35379015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 111
Target Start/End: Original strand, 8017429 - 8017508
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataag 111  Q
    |||||| ||||||||||||||||||| ||| ||| | |||||  ||||| || |||||||| ||||| |||| |||||||    
T  8017429 taagctgtaaactgttttcataagctatcttggagaacttatgaaaatacgcagaaaacaaattatgaacatatcataag 8017508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 113
Target Start/End: Complemental strand, 14451103 - 14451044
Alignment:
Q  54 agctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagtt 113  Q
    |||||||| ||| ||||| | ||||||||| ||||||| ||||||| |||||||||||||    
T  14451103 agctgtcttggatagcttgtggaaataagctgaaaacagcttatggtcatgtcataagtt 14451044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 38077142 - 38077067
Alignment:
Q  38 ataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagtt 113  Q
    ||||||||||||| |||||| || |||| ||||||| |||||| || ||||||  |||||||| ||||| ||||||    
T  38077142 ataaactgttttcttaagctatcacggagagcttatagaaataggctgaaaacctcttatggaaatgtcgtaagtt 38077067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 115
Target Start/End: Original strand, 10285892 - 10285938
Alignment:
Q  69 cttatcgaaataagccgaaaacaacttatggacatgtcataagttat 115  Q
    ||||| ||||||||  ||||||| |||||||||||||||||||||||    
T  10285892 cttatggaaataagttgaaaacagcttatggacatgtcataagttat 10285938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 33526004 - 33525946
Alignment:
Q  70 ttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccataaactct 128  Q
    |||| ||||||||| |||| |||||||||||||||| ||||||| | ||||| ||||||    
T  33526004 ttatagaaataagctgaaaccaacttatggacatgttataagttgtttccatgaactct 33525946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 1160711 - 1160654
Alignment:
Q  67 agcttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccataaa 124  Q
    ||||||| ||||||| |  |||||||||||||||||||||||| ||| | ||||||||    
T  1160711 agcttatggaaataaactaaaaacaacttatggacatgtcataggttgtttccataaa 1160654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 43141866 - 43141947
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagtt 113  Q
    ||||||||||  |||||||||||||| ||  | | || |||| |||||||   ||||||||||||||| |||||||||||||    
T  43141866 taagctataagatgttttcataagctatcctgaagagtttatggaaataaaatgaaaacaacttatgggcatgtcataagtt 43141947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 113
Target Start/End: Complemental strand, 44606141 - 44606104
Alignment:
Q  76 aaataagccgaaaacaacttatggacatgtcataagtt 113  Q
    |||| ||| |||||||||||||||||||||||||||||    
T  44606141 aaatcagctgaaaacaacttatggacatgtcataagtt 44606104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 1893355 - 1893275
Alignment:
Q  33 aagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagtt 113  Q
    ||||||||| ||||||||  ||||| ||| ||| | ||| |  |||||||| ||||| |||||||| ||||||||||||||    
T  1893355 aagctataagctgttttcggaagctatcttggagaacttgtgaaaataagctgaaaataacttatgtacatgtcataagtt 1893275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 128
Target Start/End: Original strand, 15120190 - 15120274
Alignment:
Q  44 tgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccataaactct 128  Q
    ||||||| |||||| ||  ||| |||||||| ||||||||  |||||| || ||| |||||||||||||| | ||||||| ||||    
T  15120190 tgttttcgtaagctatcatggagagcttatcaaaataagcttaaaacagctaatgaacatgtcataagttgtttccataagctct 15120274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 110
Target Start/End: Complemental strand, 28039393 - 28039329
Alignment:
Q  46 ttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataa 110  Q
    |||||||||||| ||| |||||  |||| ||||||||| ||||||| |||||| ||| |||||||    
T  28039393 ttttcataagctttcttggaaaagttatggaaataagctgaaaacagcttatgaacaagtcataa 28039329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 29633103 - 29633151
Alignment:
Q  67 agcttatcgaaataagccgaaaacaacttatggacatgtcataagttat 115  Q
    |||||||| ||||| || ||||||| |||||||| ||||||||||||||    
T  29633103 agcttatcaaaatatgctgaaaacagcttatggagatgtcataagttat 29633151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 42)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 111
Target Start/End: Complemental strand, 28689529 - 28689448
Alignment:
Q  32 taagctataaactgttttcata--agctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataag 111  Q
    ||||||||||  ||||||||||  |||| ||| |||||||||||  |||||||| |||||||||||||||||||||||||||    
T  28689529 taagctataagttgttttcatataagctatcttggaaagcttatgaaaataagctgaaaacaacttatggacatgtcataag 28689448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 17420198 - 17420279
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagtt 113  Q
    ||||||||||||||||||| |||||| |||| |||| || || ||||||||  |||||||| |||||||||||| |||||||    
T  17420198 taagctataaactgttttcgtaagctatctcagaaaactaatggaaataagttgaaaacaatttatggacatgtaataagtt 17420279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 19412640 - 19412576
Alignment:
Q  64 gaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccataaactct 128  Q
    |||||||||| |||||||||| ||| || ||||||||||||||||||||| | ||||||||||||    
T  19412640 gaaagcttatggaaataagccaaaatcagcttatggacatgtcataagttgtttccataaactct 19412576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 128
Target Start/End: Original strand, 27140478 - 27140569
Alignment:
Q  37 tataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccataaactct 128  Q
    ||||| ||||||| ||||||| ||  ||| |||||||  |||||||| ||||||||||||||||||||||||||| | | ||| ||||||||    
T  27140478 tataagctgtttttataagctatcatggagagcttatgcaaataagctgaaaacaacttatggacatgtcataagctgtttccttaaactct 27140569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 110
Target Start/End: Original strand, 35017582 - 35017649
Alignment:
Q  43 ctgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataa 110  Q
    ||||||||||||||||||  ||| ||||||| ||||||||  ||||| ||||||||||||||||||||    
T  35017582 ctgttttcataagctgtcctggagagcttatggaaataagttgaaaataacttatggacatgtcataa 35017649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 32 - 128
Target Start/End: Complemental strand, 38867906 - 38867810
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccataaactct 128  Q
    |||||| ||||||||||||||||| | ||| | | | |||||  ||||||||  ||||||||| |||||||| ||||||||||| ||||||| ||||    
T  38867906 taagctttaaactgttttcataagttatcttgaagaacttatgaaaataagctaaaaacaactgatggacatatcataagttatttccataagctct 38867810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 103
Target Start/End: Original strand, 6659509 - 6659580
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacat 103  Q
    ||||||||||  ||||||||||||||  |   || ||||||||||||||||| |||||||||||||||||||    
T  6659509 taagctataagatgttttcataagctaaccaagagagcttatcgaaataagctgaaaacaacttatggacat 6659580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 111
Target Start/End: Complemental strand, 12564562 - 12564495
Alignment:
Q  44 tgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataag 111  Q
    |||||||||||||| ||| ||| | ||||| ||||||||| ||||||||||||| ||| |||||||||    
T  12564562 tgttttcataagctatcttggagaacttatggaaataagctgaaaacaacttattgacttgtcataag 12564495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 111
Target Start/End: Original strand, 34290231 - 34290310
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataag 111  Q
    |||||||||| ||||||||||||||| ||| | | | |||||  |||||||| |||||||||||||| | ||||||||||    
T  34290231 taagctataagctgttttcataagctatcttgaagaacttatgaaaataagctgaaaacaacttatgaatatgtcataag 34290310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 104
Target Start/End: Complemental strand, 39348041 - 39347970
Alignment:
Q  33 aagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatg 104  Q
    |||||||||  ||||||||||| || ||  | ||||||||| ||||||||| ||||||||||||||||||||    
T  39348041 aagctataagttgttttcataaactatcctgcaaagcttatggaaataagctgaaaacaacttatggacatg 39347970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 110
Target Start/End: Original strand, 4549225 - 4549303
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataa 110  Q
    |||||||||| ||| ||||| || || ||  ||| ||||||| ||||||||| ||||||||||||| ||||||||||||    
T  4549225 taagctataagctgctttcacaaactatccaggatagcttatggaaataagctgaaaacaacttatagacatgtcataa 4549303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 113
Target Start/End: Original strand, 4868399 - 4868476
Alignment:
Q  36 ctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagtt 113  Q
    ||||||||||||||| ||| || | | | |||||||||  |||||||  ||||||||||||| |||||||||||||||    
T  4868399 ctataaactgttttcgtaaactattttgaaaagcttatgtaaataagttgaaaacaacttattgacatgtcataagtt 4868476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 105
Target Start/End: Original strand, 6279394 - 6279467
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgt 105  Q
    |||||| |||||| |||||||||||| ||   || ||||||| |||||| || |||||||||||||||||||||    
T  6279394 taagctttaaactattttcataagctatcctagagagcttatggaaatacgctgaaaacaacttatggacatgt 6279467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 109
Target Start/End: Complemental strand, 14630041 - 14629964
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcata 109  Q
    |||||||||| || |||||||||||| ||| ||| |  |||| ||||||||| |||||||||||||| |||| |||||    
T  14630041 taagctataagctattttcataagctatcttggagactttatggaaataagctgaaaacaacttatgaacatatcata 14629964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 110
Target Start/End: Complemental strand, 29007758 - 29007713
Alignment:
Q  65 aaagcttatcgaaataagccgaaaacaacttatggacatgtcataa 110  Q
    ||||||||||||||||||| |||||||||||||| |||| ||||||    
T  29007758 aaagcttatcgaaataagctgaaaacaacttatgaacatatcataa 29007713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 113
Target Start/End: Original strand, 30371143 - 30371224
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagtt 113  Q
    ||||||||||  ||||||||||||   | | ||| ||| ||| ||||||||| |||||||||||||||||||||||| ||||    
T  30371143 taagctataagttgttttcataagacattttggagagcgtattgaaataagctgaaaacaacttatggacatgtcattagtt 30371224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 111
Target Start/End: Complemental strand, 12477319 - 12477283
Alignment:
Q  75 gaaataagccgaaaacaacttatggacatgtcataag 111  Q
    ||||||||| |||||||||||||||||||||||||||    
T  12477319 gaaataagctgaaaacaacttatggacatgtcataag 12477283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 111
Target Start/End: Original strand, 4622088 - 4622167
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataag 111  Q
    |||||||||| |||||| |||| ||| ||| ||| ||||| |  ||||||||  |||||| |||||||||||||||||||    
T  4622088 taagctataagctgtttccatatgctatcttggagagcttgtgaaaataagctaaaaacagcttatggacatgtcataag 4622167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 113
Target Start/End: Complemental strand, 4699676 - 4699609
Alignment:
Q  46 ttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagtt 113  Q
    ||||||||| || || |||| ||||||| |||||||||  |||||| |||||| ||||||||||||||    
T  4699676 ttttcataaactatcccggagagcttatagaaataagctaaaaacagcttatgaacatgtcataagtt 4699609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 111
Target Start/End: Complemental strand, 7137069 - 7136994
Alignment:
Q  36 ctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataag 111  Q
    |||||| ||||||||||||||| ||| ||| | |||||  |||||||| ||||| |||||||| | ||||||||||    
T  7137069 ctataagctgttttcataagctatcttggagaacttatgaaaataagctgaaaataacttatgaatatgtcataag 7136994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 110
Target Start/End: Complemental strand, 7761651 - 7761608
Alignment:
Q  67 agcttatcgaaataagccgaaaacaacttatggacatgtcataa 110  Q
    |||||||| |||||||| ||||| ||||||||||||||||||||    
T  7761651 agcttatcaaaataagctgaaaaaaacttatggacatgtcataa 7761608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 113
Target Start/End: Original strand, 15579515 - 15579558
Alignment:
Q  70 ttatcgaaataagccgaaaacaacttatggacatgtcataagtt 113  Q
    |||| ||||||||| || ||||||||||||||||||||||||||    
T  15579515 ttatggaaataagctgagaacaacttatggacatgtcataagtt 15579558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 44 - 111
Target Start/End: Complemental strand, 27963433 - 27963366
Alignment:
Q  44 tgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataag 111  Q
    |||||||||||||| |   ||| |||||||  ||||||||  ||||||||||||||||||||||||||    
T  27963433 tgttttcataagctattatggagagcttatataaataagctaaaaacaacttatggacatgtcataag 27963366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 103
Target Start/End: Complemental strand, 28077136 - 28077073
Alignment:
Q  40 aaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacat 103  Q
    |||||||||||||||||| | |  || ||||||| ||||||||| |||||||||||||| ||||    
T  28077136 aaactgttttcataagctattttagagagcttattgaaataagctgaaaacaacttatgaacat 28077073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 50 - 113
Target Start/End: Complemental strand, 46252739 - 46252676
Alignment:
Q  50 cataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagtt 113  Q
    |||||||| ||| ||| |||||||  |||||| | |||||||||||||| ||||||||||||||    
T  46252739 cataagctatcttggagagcttatgaaaataacctgaaaacaacttatgaacatgtcataagtt 46252676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 110
Target Start/End: Complemental strand, 16981999 - 16981933
Alignment:
Q  44 tgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataa 110  Q
    |||| ||||||||| ||  ||| |||||||  ||||||||  |||||||||||||||||||||||||    
T  16981999 tgttatcataagctatcatggagagcttatataaataagctaaaaacaacttatggacatgtcataa 16981933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 33722438 - 33722380
Alignment:
Q  70 ttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccataaactct 128  Q
    |||| ||||||||| ||||||||||||| || |||||||| ||||| || |||||||||    
T  33722438 ttatggaaataagctgaaaacaacttatagatatgtcatatgttatttctataaactct 33722380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 34179948 - 34179882
Alignment:
Q  31 ctaagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttat 97  Q
    |||||||||||||||||||||||| || ||  | |||| |||| |||||| || |||||||||||||    
T  34179948 ctaagctataaactgttttcataaactatcctgaaaagtttatggaaatacgctgaaaacaacttat 34179882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 110
Target Start/End: Complemental strand, 37942016 - 37941982
Alignment:
Q  76 aaataagccgaaaacaacttatggacatgtcataa 110  Q
    ||||||||||| |||||||||||||||||||||||    
T  37942016 aaataagccgagaacaacttatggacatgtcataa 37941982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 113
Target Start/End: Original strand, 49517091 - 49517137
Alignment:
Q  67 agcttatcgaaataagccgaaaacaacttatggacatgtcataagtt 113  Q
    |||||||| |||||| | |||||| ||||||||||||||||||||||    
T  49517091 agcttatcaaaataacctgaaaaccacttatggacatgtcataagtt 49517137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 128
Target Start/End: Original strand, 6262776 - 6262829
Alignment:
Q  75 gaaataagccgaaaacaacttatggacatgtcataagttatgtccataaactct 128  Q
    |||||||||  |||||||||||||||||| ||||||||||| | ||||| ||||    
T  6262776 gaaataagcttaaaacaacttatggacatatcataagttattttcataagctct 6262829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 10199469 - 10199404
Alignment:
Q  46 ttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataag 111  Q
    |||||||||||| | |  || |||||||  |||||||| |||||||||||||| ||||||||||||    
T  10199469 ttttcataagctattttagagagcttatgaaaataagctgaaaacaacttatgaacatgtcataag 10199404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 34278725 - 34278684
Alignment:
Q  75 gaaataagccgaaaacaacttatggacatgtcataagttatg 116  Q
    ||||||||| ||||||||| |||| |||||||||||||||||    
T  34278725 gaaataagctgaaaacaacctatgaacatgtcataagttatg 34278684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 51929768 - 51929715
Alignment:
Q  38 ataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaaca 91  Q
    |||| ||||||||||||||| ||| |||||||||||  ||||||| ||||||||    
T  51929768 ataagctgttttcataagctatcttggaaagcttatgtaaataagacgaaaaca 51929715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 112
Target Start/End: Original strand, 3224462 - 3224498
Alignment:
Q  76 aaataagccgaaaacaacttatggacatgtcataagt 112  Q
    |||||||| || |||||||||||||||||||||||||    
T  3224462 aaataagctgagaacaacttatggacatgtcataagt 3224498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 124
Target Start/End: Original strand, 11211121 - 11211205
Alignment:
Q  40 aaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccataaa 124  Q
    ||||| ||||||||||||||   ||| || |||| ||||||||   |||||||||||||||||||  ||||||||| | ||||||    
T  11211121 aaactattttcataagctgttatggagagtttatggaaataagttaaaaacaacttatggacatgctataagttattttcataaa 11211205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 123
Target Start/End: Original strand, 17628637 - 17628685
Alignment:
Q  75 gaaataagccgaaaacaacttatggacatgtcataagttatgtccataa 123  Q
    |||||| || ||||||| ||||||||||||||||||||| | |||||||    
T  17628637 gaaatatgctgaaaacagcttatggacatgtcataagttgtttccataa 17628685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 23902142 - 23902070
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatg 104  Q
    ||||||||||  |||||||| ||||| |||  || ||||||| ||| ||||| |||||||||||||| |||||    
T  23902142 taagctataagttgttttcaaaagctatcttagagagcttatggaagtaagctgaaaacaacttatgcacatg 23902070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 26184778 - 26184822
Alignment:
Q  67 agcttatcgaaataagccgaaaacaacttatggacatgtcataag 111  Q
    ||||||| ||||||| | ||||||| |||||||||||||||||||    
T  26184778 agcttatggaaataatctgaaaacagcttatggacatgtcataag 26184822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 108
Target Start/End: Complemental strand, 33723453 - 33723381
Alignment:
Q  36 ctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcat 108  Q
    |||| |||||||||||||||||  |  | ||||||||| ||||||||| ||||||| || ||| |||||||||    
T  33723453 ctatgaactgttttcataagctaccctgtaaagcttatggaaataagctgaaaacatctcatgaacatgtcat 33723381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 44032074 - 44031998
Alignment:
Q  32 taagctataaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcat 108  Q
    ||||||||||||| ||||| |||| | ||| | | ||||||| ||||| ||| ||||| | ||||||||||||||||    
T  44032074 taagctataaactattttcttaagttatcttgaagagcttatggaaattagctgaaaatagcttatggacatgtcat 44031998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 111
Target Start/End: Complemental strand, 48748673 - 48748601
Alignment:
Q  39 taaactgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataag 111  Q
    |||| |||||||||||||| ||| ||| || |||| | |||||||  || | |||||||||||||||||||||    
T  48748673 taaattgttttcataagctatcttggacagtttatggtaataagctaaacataacttatggacatgtcataag 48748601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 111
Target Start/End: Original strand, 16117 - 16184
Alignment:
Q  44 tgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataag 111  Q
    ||||||| |||||||||| |||||| |||| ||||||||  |||||||||||||||||||||| ||||    
T  16117 tgttttcctaagctgtcttggaaagattatggaaataagttgaaaacaacttatggacatgtcgtaag 16184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 38642 - 38682
Alignment:
Q  87 aaacaacttatggacatgtcataagttatgtccataaactc 127  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  38642 aaacaacttatggacatgtcataagttatttccataaactc 38682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 12732 - 12688
Alignment:
Q  79 taagccgaaaacaacttatggacatgtcataagttatgtccataa 123  Q
    ||||| ||||||||||||||||||||||||||||| | |||||||    
T  12732 taagctgaaaacaacttatggacatgtcataagttgtttccataa 12688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 128
Target Start/End: Original strand, 27583 - 27667
Alignment:
Q  44 tgttttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcataagttatgtccataaactct 128  Q
    ||||||||||| || ||| || |||| | | ||||||||| ||||||||||||| | ||||||||||| ||| ||||||| ||||    
T  27583 tgttttcataaactatcttggtaagcgtgtggaaataagctgaaaacaacttatagccatgtcataagctatttccataagctct 27667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 113
Target Start/End: Complemental strand, 10654 - 10611
Alignment:
Q  70 ttatcgaaataagccgaaaacaacttatggacatgtcataagtt 113  Q
    |||| ||||||||| |||||||||||||||||||||||| ||||    
T  10654 ttatggaaataagctgaaaacaacttatggacatgtcattagtt 10611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 109
Target Start/End: Complemental strand, 6554 - 6492
Alignment:
Q  47 tttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcata 109  Q
    ||||||||||  || |||| ||||||| ||||||| | ||||||||||||| |||||||||||    
T  6554 tttcataagcaatcccggagagcttatggaaataaactgaaaacaacttatagacatgtcata 6492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 109
Target Start/End: Complemental strand, 13574 - 13512
Alignment:
Q  47 tttcataagctgtctcggaaagcttatcgaaataagccgaaaacaacttatggacatgtcata 109  Q
    ||||||||||  || |||| ||||||| ||||||| | ||||||||||||| |||||||||||    
T  13574 tttcataagcaatcccggagagcttatggaaataaactgaaaacaacttatagacatgtcata 13512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 3506 - 3547
Alignment:
Q  70 ttatcgaaataagccgaaaacaacttatggacatgtcataag 111  Q
    |||| ||||||||| ||||||||||||||||||| |||||||    
T  3506 ttatggaaataagctgaaaacaacttatggacatatcataag 3547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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