View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19451_low_5 (Length: 256)
Name: NF19451_low_5
Description: NF19451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19451_low_5 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 3216590 - 3216845
Alignment:
| Q |
1 |
gcactaaatgcaccaagtgcaattacatcttcaaagaaagggttggtgggtccgttaagggagattgaaagtacatcaacaccgtcttcaactgcagcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3216590 |
gcactaaatgcaccaagtgcaattacatcttcaaagaaagggttggtgggtccgttaagggagattgaaagtacatcaacaccgtcttcaactgcagcat |
3216689 |
T |
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| Q |
101 |
ccattcctgctaatgttgcactctcaggacaaccactgctgctgcatactttgtagattgccaagtgtgcatctggtgccatgcctgttgccgtaccttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3216690 |
ccattcctgctaatgttgcactctcaggacaaccactgctgctgcatactttgtagattgccaagtgtgcatctggtgccatgcctgttgccgtaccttt |
3216789 |
T |
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| Q |
201 |
agcgttgccgaagacattggccccctgtacaagccttccagcagccgtgctggccg |
256 |
Q |
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| T |
3216790 |
agcgttgccgaagacattggccccctgtacaagccttccagcagccgtgctggccg |
3216845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 3208651 - 3208904
Alignment:
| Q |
1 |
gcactaaatgcaccaagtgcaattacatcttcaaagaaagggttggtgggtccgttaagggagattgaaagtacatcaacaccgtcttcaactgcagcat |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| || |||||| ||||||| ||||||||||||||| | || ||||||||||||| |
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| T |
3208651 |
gcactaaatgcaccaagtgcaattccatcttcaaagaaaggagaggagggtcctccgagggagagagaaagtacatcaacatcatcatcaactgcagcat |
3208750 |
T |
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| Q |
101 |
ccattcctgctaatgttgcactctcaggacaaccactgctgctgcatactttgtagattgccaagtgtgcatctggtgccatgcctgttgccgtaccttt |
200 |
Q |
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| T |
3208751 |
ccattccagctaatattgaactttcagtacaaccgtagatgttgcatactttgtaaattgccaagtgtgcatatggtgccatgccaattgcagtaccatt |
3208850 |
T |
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| Q |
201 |
agcgttgccgaagacattggccccctgtacaagccttccagcagccgtgctggc |
254 |
Q |
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| T |
3208851 |
agcattaccaaagacattagcaccttgcacgggccttccagcggccgtgctggc |
3208904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 3202677 - 3202932
Alignment:
| Q |
1 |
gcactaaatgcaccaagtgcaattacatcttcaaagaaagggttggtgggtccgttaagggagattgaaagtacatcaacaccgtcttcaactgcagcat |
100 |
Q |
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|||||||||||||||||||||||| || ||||||||||| | | |||| |||||||| ||||| ||||||||||| || ||||| ||| ||| |
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| T |
3202677 |
gcactaaatgcaccaagtgcaattccactttcaaagaaagaagtagagggttgtccaagggagagagaaagaacatcaacaccatcatcaacagcaacat |
3202776 |
T |
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| Q |
101 |
ccattcctgctaatgttgcactctcaggacaaccactgctgctgcatactttgtagattgccaagtgtgcatctggtgccatgcctgttgccgtaccttt |
200 |
Q |
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||||||| |||||| | |||| |||| ||||||| | || |||||||||||| |||||||||||||||| |||||||||||| |||| ||||| || |
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| T |
3202777 |
ccattccagctaatatgacactttcagcacaaccaaagacgccgcatactttgtaaattgccaagtgtgcatatggtgccatgccaattgcagtaccatt |
3202876 |
T |
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| Q |
201 |
agcgttgccgaagacattggccccctgtacaagccttccagcagccgtgctggccg |
256 |
Q |
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|| || || |||||||| || || | || |||||||||| ||||||||||||| |
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| T |
3202877 |
ggcattaccaaagacattagcacctttcacgggccttccagcggccgtgctggccg |
3202932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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