View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19451_low_7 (Length: 222)

Name: NF19451_low_7
Description: NF19451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19451_low_7
NF19451_low_7
[»] chr4 (5 HSPs)
chr4 (17-220)||(16591763-16591966)
chr4 (17-222)||(16602333-16602538)
chr4 (154-222)||(16592020-16592088)
chr4 (133-222)||(35335687-35335776)
chr4 (65-134)||(35327315-35327384)
[»] chr1 (1 HSPs)
chr1 (133-182)||(24541019-24541068)


Alignment Details
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 16591763 - 16591966
Alignment:
Q  17 tctttcaatgtatttggtcaagaacttgaatcccttcacgaaccaacgccacttcatccaccggctaatgcccctctccaccatcgtcacaaccacaatc 116  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  16591763 tctttcaatgtatttggtgaagaacttgaatcccttcacgaaccaacaccacttcatccatcggctaacgcccctctccaccatcgtcacaaccacaatc 16591862  T
Q  117 tctcaccgaccactgctcacactcctttacacccttctcacccggttaaacctccaacccatcaccactatcatcatcctccggctcatgcccctgttca 216  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||| | || || ||||| |||||||||||| ||||    
T  16591863 tctcaccgaccactgctcacactcctttacacccttctcaccctgctaaacctccaacccgtcaccaccaccaacaccctcctgctcatgcccctcttca 16591962  T
Q  217 acct 220  Q
    ||||    
T  16591963 acct 16591966  T

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Target: chr4; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 16602333 - 16602538
Alignment:
Q  17 tctttcaatgtatttggtcaagaacttgaatcccttcacgaaccaacgccacttcatccaccggctaatgcccctctccaccatcgtcacaaccacaatc 116  Q
    |||||||||||||||| | ||||||||||||| ||||| |||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  16602333 tctttcaatgtatttgctgaagaacttgaatctcttcatgaaccaacaccacttcatctaccggctaacgcccctctccaccatcgtcacaaccacaatc 16602432  T
Q  117 tctcaccgaccactgctcacactcctttacacccttctcacccggttaaacctccaacccatcaccactatcatcatcctccggctcatgcccctgttca 216  Q
    ||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||| | || |||| || ||||| |||||||||||||||||    
T  16602433 tctcaccgaccactgctcacactcctttacacccttctcaccatgctaaacctccaacccatccctaccatcaacaccctcctgctcatgcccctgttca 16602532  T
Q  217 acctcc 222  Q
    ||||||    
T  16602533 acctcc 16602538  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 154 - 222
Target Start/End: Original strand, 16592020 - 16592088
Alignment:
Q  154 tcacccggttaaacctccaacccatcaccactatcatcatcctccggctcatgcccctgttcaacctcc 222  Q
    |||||| |||||||||||||||||||||||| |||| || ||||| |||||||||||||||||||||||    
T  16592020 tcaccctgttaaacctccaacccatcaccaccatcaacaccctcctgctcatgcccctgttcaacctcc 16592088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 222
Target Start/End: Complemental strand, 35335776 - 35335687
Alignment:
Q  133 tcacactcctttacacccttctcacccggttaaacctccaacccatcaccactatcatcatcctccggctcatgcccctgttcaacctcc 222  Q
    |||| |||||||||||||| |||| |    |||||| |||||||||| |||  |||| |||||||| ||||| |||||||||||||||||    
T  35335776 tcacgctcctttacaccctcctcatcatactaaacccccaacccatcgccatcatcaacatcctcctgctcacgcccctgttcaacctcc 35335687  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 65 - 134
Target Start/End: Complemental strand, 35327384 - 35327315
Alignment:
Q  65 ccacttcatccaccggctaatgcccctctccaccatcgtcacaaccacaatctctcaccgaccactgctc 134  Q
    |||||||| ||||||||||| ||||||| ||||||||  ||| |||||| || |||||| ||| ||||||    
T  35327384 ccacttcacccaccggctaacgcccctcaccaccatcaccaccaccacattcactcaccaacccctgctc 35327315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 182
Target Start/End: Complemental strand, 24541068 - 24541019
Alignment:
Q  133 tcacactcctttacacccttctcacccggttaaacctccaacccatcacc 182  Q
    ||||||||||||||| ||| ||||||| |  |||||||||||||||||||    
T  24541068 tcacactcctttacatcctcctcaccctgccaaacctccaacccatcacc 24541019  T

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