View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19452_high_1 (Length: 380)
Name: NF19452_high_1
Description: NF19452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19452_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 37 - 363
Target Start/End: Complemental strand, 40958591 - 40958263
Alignment:
| Q |
37 |
actaaagttggcaatgatccatnnnnnnntttgcttggccaaataggatacaaagacaaccagatggacatagccctagaaaatcacaaggaaaaactcc |
136 |
Q |
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| T |
40958591 |
actaaagttggcaatgatccataaaaaaatttgcttggccaaataggatacaaagacaaccagatggacataaccctaggaaatcacaaggaaaaactcc |
40958492 |
T |
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| Q |
137 |
caagccagcaaaagtgccacaagctttttgaaacaggtaactaccaaatccaagttaaagaagaattggatcgagtttgttaattaattaagagatcata |
236 |
Q |
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| T |
40958491 |
caagccagcaaaagtgccacaaactttttgaaacaggtaactaccaaatccaagttaaagaagaattggatcgagtttgttgattaattaagagatcata |
40958392 |
T |
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| Q |
237 |
ttagccaattacactcttggtagaaagggg--gagtttagtataaagattggtgaaattccaagcattatttattgttatcaaccaacaatatcacatag |
334 |
Q |
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||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40958391 |
ttagccaattatactcttggtagaaagggggagagtttagtattaagattggtgaaattccaagcattatttattgttatcaaccaacaatatcacatag |
40958292 |
T |
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| Q |
335 |
gtgaagattggtgtcataaatatgaacat |
363 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
40958291 |
gtgaagattggtgtcataaatatgaacat |
40958263 |
T |
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