View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19453_high_10 (Length: 409)
Name: NF19453_high_10
Description: NF19453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19453_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 16 - 390
Target Start/End: Original strand, 18658645 - 18659017
Alignment:
| Q |
16 |
atgcaaaaccataataatatgactagaaaggaattcgacnnnnnnnnnnnnnnngtacttagatatttttcaggttcatttgaataacaatgtgtcattt |
115 |
Q |
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| T |
18658645 |
atgcaaaaccataataatatgactagaaaggaattcgacaaaaaaaaaaaaa--gtacttagatatttttcaggttcatttgaataacaatgtgtcattt |
18658742 |
T |
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| Q |
116 |
tttgtattgaaggtaaaccatgggaatttggtgaagttggaaggattttgcatagaaccagaagaatcaaattgctatctagtctatgaatatgttgaaa |
215 |
Q |
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| T |
18658743 |
tttgtattgaaggtaaaccatgggaatttggtgaagttggaaggattttgcatagaaccagaagaatcaaattgctatctagtctatgaatatgttgaaa |
18658842 |
T |
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| Q |
216 |
atggatctctttactcatggttacatgaagacaaaaacgaaaagttaaattgggtaacaaggctaagaatagccgttgacattgccaatggtttattgta |
315 |
Q |
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| T |
18658843 |
atggatctctttactcatggttacatgaagacaaaaacgaaaagttaaattgggtaacaaggctaagaatagccgttgacattgccaatggtttattgta |
18658942 |
T |
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| Q |
316 |
cattcatgaacacacaagaccaaaggttgtacacaaagacattaaaagtagcaacattctcttggactcaaacat |
390 |
Q |
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| T |
18658943 |
cattcatgaacacacaagaccaaaggttgtacacaaagacattaaaagtagcaacattctcttggactcaaacat |
18659017 |
T |
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