View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19453_high_14 (Length: 389)

Name: NF19453_high_14
Description: NF19453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19453_high_14
NF19453_high_14
[»] chr3 (36 HSPs)
chr3 (1-371)||(28686956-28687328)
chr3 (65-370)||(28700947-28701252)
chr3 (59-247)||(25253646-25253834)
chr3 (82-247)||(9505129-9505294)
chr3 (96-252)||(5418659-5418815)
chr3 (76-223)||(52934773-52934920)
chr3 (79-245)||(1674593-1674759)
chr3 (76-192)||(41609849-41609965)
chr3 (79-163)||(52199353-52199437)
chr3 (65-247)||(28242533-28242715)
chr3 (112-246)||(52199426-52199560)
chr3 (258-371)||(28711488-28711600)
chr3 (95-192)||(32689149-32689246)
chr3 (95-247)||(19560782-19560934)
chr3 (80-193)||(39942862-39942975)
chr3 (258-334)||(28718673-28718749)
chr3 (128-247)||(12710715-12710834)
chr3 (88-247)||(54393451-54393610)
chr3 (117-247)||(39135356-39135486)
chr3 (59-164)||(53529681-53529786)
chr3 (88-192)||(33438794-33438898)
chr3 (80-163)||(50965368-50965452)
chr3 (80-163)||(51068503-51068587)
chr3 (97-247)||(23206316-23206465)
chr3 (115-237)||(39469549-39469671)
chr3 (128-247)||(26049548-26049667)
chr3 (80-247)||(44574491-44574658)
chr3 (75-162)||(46293306-46293393)
chr3 (128-246)||(20550211-20550329)
chr3 (1-43)||(28700809-28700851)
chr3 (108-165)||(18074569-18074626)
chr3 (136-245)||(30743593-30743702)
chr3 (115-247)||(40943561-40943693)
chr3 (128-238)||(30662148-30662258)
chr3 (97-161)||(29536579-29536643)
chr3 (102-150)||(45995287-45995335)
[»] chr4 (50 HSPs)
chr4 (76-246)||(11055235-11055405)
chr4 (79-247)||(22184467-22184635)
chr4 (79-192)||(52813565-52813678)
chr4 (82-192)||(50605975-50606085)
chr4 (83-247)||(48151134-48151298)
chr4 (82-192)||(19852945-19853055)
chr4 (82-192)||(21441548-21441658)
chr4 (82-192)||(53369839-53369949)
chr4 (59-247)||(26632880-26633068)
chr4 (59-194)||(48339160-48339295)
chr4 (102-192)||(12789615-12789705)
chr4 (82-192)||(49820949-49821059)
chr4 (109-246)||(9469771-9469908)
chr4 (83-192)||(24007966-24008075)
chr4 (83-247)||(22721296-22721459)
chr4 (76-192)||(44791306-44791422)
chr4 (88-162)||(36156387-36156461)
chr4 (82-160)||(53369655-53369733)
chr4 (125-246)||(46944553-46944674)
chr4 (82-247)||(48977543-48977708)
chr4 (102-162)||(6866196-6866256)
chr4 (65-157)||(16742423-16742515)
chr4 (82-246)||(27891354-27891517)
chr4 (95-247)||(52706197-52706349)
chr4 (114-157)||(9959342-9959385)
chr4 (128-247)||(12673036-12673155)
chr4 (82-189)||(45674802-45674909)
chr4 (129-247)||(51995092-51995210)
chr4 (108-246)||(56224138-56224276)
chr4 (128-189)||(5769181-5769242)
chr4 (97-162)||(34718121-34718186)
chr4 (109-246)||(36543775-36543912)
chr4 (115-247)||(40797830-40797962)
chr4 (79-155)||(43387232-43387308)
chr4 (76-192)||(52733764-52733879)
chr4 (95-246)||(7505509-7505660)
chr4 (108-246)||(49083243-49083381)
chr4 (88-157)||(38493075-38493144)
chr4 (111-192)||(44378246-44378327)
chr4 (88-249)||(50146924-50147085)
chr4 (115-187)||(25134574-25134646)
chr4 (76-131)||(38791693-38791748)
chr4 (123-246)||(48731182-48731305)
chr4 (95-189)||(43812123-43812217)
chr4 (115-192)||(80497-80574)
chr4 (128-189)||(5762611-5762672)
chr4 (78-163)||(15697175-15697260)
chr4 (88-165)||(24550050-24550127)
chr4 (129-161)||(13455715-13455747)
chr4 (108-192)||(19455221-19455305)
[»] chr8 (11 HSPs)
chr8 (82-247)||(3307901-3308066)
chr8 (88-247)||(34655008-34655167)
chr8 (82-192)||(11161539-11161649)
chr8 (88-221)||(43967483-43967616)
chr8 (86-162)||(10749312-10749388)
chr8 (82-192)||(453450-453560)
chr8 (95-247)||(9412532-9412684)
chr8 (59-162)||(34516082-34516185)
chr8 (88-157)||(33280075-33280144)
chr8 (105-189)||(27189148-27189232)
chr8 (95-162)||(23181135-23181202)
[»] chr7 (46 HSPs)
chr7 (79-247)||(33935477-33935645)
chr7 (79-246)||(44421910-44422078)
chr7 (59-238)||(23227016-23227195)
chr7 (59-238)||(23236169-23236348)
chr7 (67-247)||(222234-222414)
chr7 (76-252)||(5776133-5776309)
chr7 (82-244)||(10618893-10619055)
chr7 (79-247)||(22075032-22075200)
chr7 (95-247)||(45055713-45055865)
chr7 (96-192)||(37334264-37334360)
chr7 (76-192)||(42072049-42072165)
chr7 (102-192)||(5794999-5795089)
chr7 (88-246)||(11595805-11595963)
chr7 (109-246)||(7447875-7448012)
chr7 (95-184)||(15434228-15434317)
chr7 (82-163)||(33171626-33171707)
chr7 (95-192)||(36926984-36927081)
chr7 (59-192)||(45176194-45176327)
chr7 (95-192)||(48505851-48505948)
chr7 (81-161)||(2466611-2466691)
chr7 (123-247)||(33124708-33124832)
chr7 (49-192)||(48634385-48634529)
chr7 (115-246)||(26719820-26719951)
chr7 (102-192)||(3930779-3930869)
chr7 (82-192)||(26216244-26216354)
chr7 (88-229)||(40480076-40480218)
chr7 (83-157)||(41449724-41449798)
chr7 (59-160)||(3942125-3942226)
chr7 (95-192)||(28949821-28949918)
chr7 (95-252)||(43052857-43053014)
chr7 (79-246)||(20400965-20401132)
chr7 (59-162)||(27231632-27231735)
chr7 (59-161)||(37401660-37401762)
chr7 (82-247)||(665855-666020)
chr7 (112-245)||(21760593-21760726)
chr7 (115-247)||(18250001-18250133)
chr7 (59-162)||(17608661-17608764)
chr7 (108-166)||(29527384-29527442)
chr7 (113-163)||(37101190-37101240)
chr7 (115-192)||(36472444-36472521)
chr7 (128-247)||(18740226-18740345)
chr7 (128-247)||(46573620-46573739)
chr7 (128-246)||(17025370-17025488)
chr7 (117-229)||(10096478-10096590)
chr7 (128-164)||(49001077-49001113)
chr7 (128-192)||(49034287-49034351)
[»] chr2 (27 HSPs)
chr2 (76-247)||(27634632-27634803)
chr2 (76-247)||(44740491-44740661)
chr2 (76-247)||(3409196-3409367)
chr2 (76-192)||(36538617-36538733)
chr2 (88-247)||(2646982-2647141)
chr2 (88-247)||(34116181-34116340)
chr2 (82-192)||(34064672-34064782)
chr2 (83-246)||(40458889-40459052)
chr2 (128-255)||(41332244-41332371)
chr2 (82-192)||(26436321-26436431)
chr2 (82-192)||(33831462-33831572)
chr2 (59-161)||(39690114-39690216)
chr2 (88-249)||(18667724-18667885)
chr2 (60-157)||(40680166-40680263)
chr2 (51-153)||(44935705-44935805)
chr2 (88-162)||(11027881-11027955)
chr2 (82-192)||(41959110-41959220)
chr2 (82-163)||(2578046-2578127)
chr2 (117-238)||(24844683-24844804)
chr2 (64-192)||(9963708-9963836)
chr2 (128-192)||(33164043-33164107)
chr2 (76-151)||(2908700-2908775)
chr2 (128-246)||(17368999-17369116)
chr2 (86-247)||(30713127-30713288)
chr2 (88-162)||(27902532-27902605)
chr2 (115-192)||(11007035-11007112)
chr2 (129-246)||(27464581-27464698)
[»] chr1 (41 HSPs)
chr1 (59-161)||(3577614-3577716)
chr1 (65-249)||(23915603-23915787)
chr1 (76-247)||(15306454-15306625)
chr1 (82-247)||(24469825-24469990)
chr1 (82-246)||(47602871-47603035)
chr1 (82-192)||(37441249-37441359)
chr1 (88-246)||(45581017-45581175)
chr1 (65-246)||(31869544-31869725)
chr1 (76-247)||(32179819-32179990)
chr1 (88-247)||(35810691-35810850)
chr1 (88-227)||(43087494-43087633)
chr1 (88-246)||(19508501-19508659)
chr1 (59-162)||(7596337-7596440)
chr1 (128-247)||(28006363-28006482)
chr1 (76-247)||(36419062-36419233)
chr1 (128-247)||(44596530-44596649)
chr1 (88-161)||(23916783-23916856)
chr1 (102-247)||(25124893-25125038)
chr1 (111-247)||(7702831-7702967)
chr1 (115-247)||(29677527-29677659)
chr1 (81-192)||(39802830-39802941)
chr1 (59-162)||(46265037-46265140)
chr1 (128-245)||(5204479-5204596)
chr1 (59-162)||(15662893-15662996)
chr1 (95-162)||(40002874-40002941)
chr1 (76-247)||(42916122-42916293)
chr1 (111-164)||(8828317-8828370)
chr1 (59-191)||(14101806-14101939)
chr1 (108-165)||(33233640-33233697)
chr1 (114-219)||(51432239-51432344)
chr1 (114-246)||(31816567-31816699)
chr1 (115-247)||(40159638-40159770)
chr1 (115-246)||(7995971-7996102)
chr1 (108-194)||(7016136-7016222)
chr1 (128-246)||(15257180-15257298)
chr1 (88-162)||(20349119-20349193)
chr1 (88-162)||(42937047-42937121)
chr1 (146-246)||(12224584-12224684)
chr1 (83-227)||(13645208-13645352)
chr1 (128-164)||(30251437-30251473)
chr1 (110-162)||(50447336-50447388)
[»] chr6 (18 HSPs)
chr6 (82-247)||(4441309-4441474)
chr6 (65-162)||(1501798-1501895)
chr6 (59-247)||(12428831-12429008)
chr6 (88-247)||(33110431-33110590)
chr6 (95-192)||(10346701-10346798)
chr6 (59-192)||(10961859-10961992)
chr6 (65-158)||(11460103-11460196)
chr6 (83-247)||(3081726-3081890)
chr6 (79-163)||(6999231-6999315)
chr6 (128-252)||(17441171-17441295)
chr6 (88-247)||(5640260-5640419)
chr6 (128-227)||(22295929-22296028)
chr6 (83-245)||(7437272-7437434)
chr6 (88-162)||(9950853-9950927)
chr6 (115-247)||(13312022-13312156)
chr6 (82-156)||(8200609-8200683)
chr6 (108-161)||(32163534-32163587)
chr6 (110-162)||(18095514-18095566)
[»] chr5 (25 HSPs)
chr5 (88-252)||(1840690-1840854)
chr5 (88-247)||(26218020-26218179)
chr5 (109-247)||(3801372-3801510)
chr5 (88-246)||(41783298-41783456)
chr5 (88-229)||(14500732-14500873)
chr5 (97-192)||(27906080-27906175)
chr5 (86-228)||(11136034-11136175)
chr5 (109-247)||(38522869-38523007)
chr5 (109-246)||(31021857-31021994)
chr5 (82-237)||(19282132-19282287)
chr5 (83-246)||(31620836-31620999)
chr5 (102-192)||(18880179-18880269)
chr5 (83-247)||(10493953-10494117)
chr5 (80-247)||(15933125-15933295)
chr5 (88-162)||(20188946-20189020)
chr5 (111-160)||(29328040-29328089)
chr5 (82-150)||(3457793-3457861)
chr5 (88-182)||(2675989-2676083)
chr5 (76-162)||(20190677-20190763)
chr5 (83-247)||(27450589-27450753)
chr5 (109-161)||(32157031-32157083)
chr5 (111-246)||(27196073-27196208)
chr5 (103-150)||(39414169-39414216)
chr5 (83-192)||(39407374-39407483)
chr5 (128-192)||(1225364-1225428)
[»] scaffold0204 (1 HSPs)
scaffold0204 (59-194)||(26682-26817)
[»] scaffold0316 (1 HSPs)
scaffold0316 (82-191)||(19263-19372)
[»] scaffold0025 (1 HSPs)
scaffold0025 (102-246)||(11377-11521)
[»] scaffold0171 (1 HSPs)
scaffold0171 (111-246)||(21084-21218)
[»] scaffold0022 (1 HSPs)
scaffold0022 (73-247)||(124489-124663)
[»] scaffold0224 (1 HSPs)
scaffold0224 (76-247)||(7316-7487)
[»] scaffold0444 (1 HSPs)
scaffold0444 (111-192)||(830-911)
[»] scaffold0260 (1 HSPs)
scaffold0260 (88-162)||(11442-11516)


Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 28686956 - 28687328
Alignment:
Q  1 gcaaacaacccaaaacaaaaatacaagtacaccaaaactagtgtgtccatacac--acacatatacatatattgtcaagtcaactcataaaccaaccgag 98  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||  ||||||||||||||||| ||||||||||||||||||||||||||    
T  28686956 gcaaacaacccaaaacaaaaatacaagtacaccaaaactagggtgtccaaacacacacacatatacatatattatcaagtcaactcataaaccaaccgag 28687055  T
Q  99 tcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagcaa 198  Q
    ||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||| || | |||||| ||||||||||| |||||||||||||||    
T  28687056 tcaaactacatatagcttaagttgagctcgtttatttaacgaacttaattttcagctcaaatttagcccgtctggttcatgaaccaagttcaacaagcaa 28687155  T
Q  199 attattgagtcgagttccgaactatattcgatttggttcgcttcattgctaaccttatttccaatattaagagagagaaggacaatttaaataattttat 298  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28687156 attattgagtcgagttccgaaccatattcgatttggttcgcttcattgctaaccttatttccaatattaagagagagaaggacaatttaaataattttat 28687255  T
Q  299 tttttgctttatttcatttgattatgatcatcttagtgttcacatctataattacaaggtatgtgaaaatatt 371  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  28687256 tttttgccttatttcatttgattatgatcatcttagtgtacacatctataattacaaggtatgtggaaatatt 28687328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 65 - 370
Target Start/End: Original strand, 28700947 - 28701252
Alignment:
Q  65 atatattgtcaagtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaa 164  Q
    ||||||| || ||||||||||| || |||||||||| ||||| ||||| |||||||| | || |||| ||||||||| ||||||||||| |||| |||||    
T  28700947 atatattatcgagtcaactcatgaatcaaccgagtcgaactagatataactcaagttcaactcatttttttaacgaatttaattttcagttcaacttcaa 28701046  T
Q  165 cccgtccggttcatgaactaagttcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattgctaaccttatttccaata 264  Q
    |   |  |||||||||| ||| || |||||||||||| |||| |||||||||  | ||||||||||||| |||| |||||| ||| || |||||||||||    
T  28701047 cttatttggttcatgaattaaatttaacaagcaaattgttgaatcgagttccagattatattcgatttgattcgattcatttctagccctatttccaata 28701146  T
Q  265 ttaagagagagaaggacaatttaaataattttattttttgctttatttcatttgattatgatcatcttagtgttcacatctataattacaaggtatgtga 364  Q
    |||||||||| |  ||||| ||||||||||||||||||| | |||||| |||||||||||||||||||||||  ||  || | ||| ||||||| |||||    
T  28701147 ttaagagagaaattgacaagttaaataattttatttttttccttattttatttgattatgatcatcttagtggacaagtccacaatgacaaggtttgtga 28701246  T
Q  365 aaatat 370  Q
    ||||||    
T  28701247 aaatat 28701252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 59 - 247
Target Start/End: Original strand, 25253646 - 25253834
Alignment:
Q  59 atatacatatattgtcaagtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaa 158  Q
    ||||| ||||||| || || |||||||| |||||| |||||| |  ||||||||||| |||||  ||| ||||||||||||||||||||||| |||||||    
T  25253646 atatatatatattatcgagccaactcatgaaccaatcgagtcgagttacatatagcttaagttcggctcatttatttaacgaacttaatttttagctcaa 25253745  T
Q  159 gttcaacccgtccggttcatgaactaagttcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattgc 247  Q
    ||||| | | |  ||||||||||| ||||||||||||   ||| | |||||||||||| |||||||||||| |||||||| ||||||||    
T  25253746 gttcagctcatttggttcatgaaccaagttcaacaagtttattgtcgagtcgagttccaaactatattcgagttggttcggttcattgc 25253834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 82 - 247
Target Start/End: Complemental strand, 9505294 - 9505129
Alignment:
Q  82 ctcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaa 181  Q
    ||||| ||||||||||  | ||||| ||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||| | |  ||||||||||    
T  9505294 ctcatgaaccaaccgaaccgaactatatatatctcaagttcagctcatttatttaacgaacttaattttcagctcaagttcaactcatttggttcatgaa 9505195  T
Q  182 ctaagttcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattgc 247  Q
    | ||||||||| ||  |||| | || ||||||||||||||||  |||| |||||||| ||||||||    
T  9505194 ccaagttcaacgagttaattgtcgaatcgagttccgaactattgtcgagttggttcggttcattgc 9505129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 96 - 252
Target Start/End: Original strand, 5418659 - 5418815
Alignment:
Q  96 gagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaag 195  Q
    ||||| ||||| ||||| |||||||| | || ||||| |||||||||||||| || ||||||||||| || |||  |||||||||||||||||||||||     
T  5418659 gagtcgaactatatataactcaagttcaactcatttagttaacgaacttaatctttagctcaagttcgactcgtttggttcatgaactaagttcaacaaa 5418758  T
Q  196 caaattattgagtcgagttccgaactatattcgatttggttcgcttcattgctaacc 252  Q
    | ||||| | |||||||||||||||| ||||||| |||  ||| |||||||| ||||    
T  5418759 ctaattacttagtcgagttccgaactttattcgagttgtatcgattcattgccaacc 5418815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 76 - 223
Target Start/End: Original strand, 52934773 - 52934920
Alignment:
Q  76 agtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggtt 175  Q
    ||||| ||||| |||||| |||||| ||||| |||||| |||||||  ||| |||||||||||||||||||||||| ||||||||||| | | |  ||||    
T  52934773 agtcagctcatgaaccaatcgagtcgaactatatatagatcaagttcggctcatttatttaacgaacttaattttctgctcaagttcagctcatttggtt 52934872  T
Q  176 catgaactaagttcaacaagcaaattattgagtcgagttccgaactat 223  Q
    ||||||| ||||||||  ||  |||||| || ||||||||||||||||    
T  52934873 catgaaccaagttcaatgagttaattatcgaatcgagttccgaactat 52934920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 79 - 245
Target Start/End: Original strand, 1674593 - 1674759
Alignment:
Q  79 caactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcat 178  Q
    |||| |||||| ||| |||||| ||||| ||| | |||||||| ||||||||||||||||  ||  ||||||||||| ||||||||| | |  |||||||    
T  1674593 caacccataaatcaatcgagtcgaactatatacaactcaagttcagcttatttatttaacatacaaaattttcagcttaagttcaactcatttggttcat 1674692  T
Q  179 gaactaagttcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcatt 245  Q
    |||| ||||||||||||  |||| |||| |||| ||| |||||||  |||| |||||||| ||||||    
T  1674693 gaaccaagttcaacaagataattgttgaatcgaattctgaactattgtcgagttggttcggttcatt 1674759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 76 - 192
Target Start/End: Original strand, 41609849 - 41609965
Alignment:
Q  76 agtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggtt 175  Q
    ||||| ||||| |||| | |||||| ||||| || ||||||||||| |||| ||||| ||||||||||||||||||||||||||| || | |||  ||||    
T  41609849 agtcatctcatgaacccaacgagtcgaactatatgtagctcaagttcagctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggtt 41609948  T
Q  176 catgaactaagttcaac 192  Q
    ||||||| |||||||||    
T  41609949 catgaaccaagttcaac 41609965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 79 - 163
Target Start/End: Original strand, 52199353 - 52199437
Alignment:
Q  79 caactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttca 163  Q
    |||||||| ||||||| ||||| ||||| ||| |||||||||| |||| |||| |||||||||||||||||||||||||||||||    
T  52199353 caactcatgaaccaactgagtcgaactatataaagctcaagttcagctcatttgtttaacgaacttaattttcagctcaagttca 52199437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 65 - 247
Target Start/End: Original strand, 28242533 - 28242715
Alignment:
Q  65 atatattgtcaagtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaa 164  Q
    ||||||| || || || ||||| ||||||||||||| ||||| ||| |||||||||| || | |||||||||||||| |||||||||||||||| ||||     
T  28242533 atatattatcgagccagctcatgaaccaaccgagtcgaactatatacagctcaagttcagatcatttatttaacgaatttaattttcagctcaaattcag 28242632  T
Q  165 cccgtccggttcatgaactaagttcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattgc 247  Q
    | | |  ||||||||||| || |||||| ||  |||| | || || ||||||||| |||  |||| ||| |||| ||||||||    
T  28242633 ctcatttggttcatgaaccaaattcaacgagttaattgtcgaatcaagttccgaattattgtcgagttgattcggttcattgc 28242715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 112 - 246
Target Start/End: Original strand, 52199426 - 52199560
Alignment:
Q  112 agctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagcaaattattgagtcga 211  Q
    |||||||||| |||| |||| ||||||||||||||||||||||||||||||| | |||  ||||||||||| ||||||||| |   |||| | || ||||    
T  52199426 agctcaagttcagctcatttgtttaacgaacttaattttcagctcaagttcagctcgtttggttcatgaaccaagttcaacgaattaattgtcgaatcga 52199525  T
Q  212 gttccgaactatattcgatttggttcgcttcattg 246  Q
    || || ||||||  |||| |||||||| |||||||    
T  52199526 gtcccaaactattgtcgagttggttcgattcattg 52199560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 258 - 371
Target Start/End: Original strand, 28711488 - 28711600
Alignment:
Q  258 tccaatattaagagagagaaggacaatttaaataattttattttttgctttatttcatttgattatgatcatcttagtgttcacatctataattacaagg 357  Q
    |||||||| |||||| |  | ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||  | ||| || |||||||||    
T  28711488 tccaatataaagagaaaagaagacaatttaaataattttattttttactt-atttcatttgattatgatcatcttagagtataaatccatgattacaagg 28711586  T
Q  358 tatgtgaaaatatt 371  Q
    | | ||||||||||    
T  28711587 tctatgaaaatatt 28711600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 95 - 192
Target Start/End: Original strand, 32689149 - 32689246
Alignment:
Q  95 cgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaac 192  Q
    |||||| ||||| || ||||||||||| |||| ||||| ||||||||||||||||||||||||||| || | |||  ||||||||||| |||||||||    
T  32689149 cgagtcgaactatatgtagctcaagttcagctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaaccaagttcaac 32689246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 95 - 247
Target Start/End: Complemental strand, 19560934 - 19560782
Alignment:
Q  95 cgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaa 194  Q
    |||||||||||| ||||| ||||||||  ||| |||||||||||| |||||| | | | |||||||||| |  ||   |||||||||| ||||||||| |    
T  19560934 cgagtcaaactatatataactcaagttcggctcatttatttaacggacttaactcttaactcaagttcagcttgtttcgttcatgaaccaagttcaacga 19560835  T
Q  195 gcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattgc 247  Q
       |||| | ||||||| ||||||||||||||||| |||||||| ||||||||    
T  19560834 attaattgtcgagtcgaattccgaactatattcgagttggttcggttcattgc 19560782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 80 - 193
Target Start/End: Complemental strand, 39942975 - 39942862
Alignment:
Q  80 aactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatg 179  Q
    |||||||||||||| |||||| | | |  |||| |||||||| |||| || ||||||||||||||||||||||||||||||||| | | |   |||||||    
T  39942975 aactcataaaccaaacgagtcgagccatctataactcaagttcagctcatctatttaacgaacttaattttcagctcaagttcagctcattaagttcatg 39942876  T
Q  180 aactaagttcaaca 193  Q
    ||| ||||||||||    
T  39942875 aaccaagttcaaca 39942862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 258 - 334
Target Start/End: Original strand, 28718673 - 28718749
Alignment:
Q  258 tccaatattaagagagagaaggacaatttaaataattttattttttgctttatttcatttgattatgatcatcttag 334  Q
    ||||||||||||||| |  |  |||||||||||||||||||||||||  |||||| |||||||||||||||||||||    
T  28718673 tccaatattaagagaaaagaaaacaatttaaataattttattttttgacttattttatttgattatgatcatcttag 28718749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 128 - 247
Target Start/End: Original strand, 12710715 - 12710834
Alignment:
Q  128 atttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagcaaattattgagtcgagttccgaactatattc 227  Q
    ||||||||||||| ||||||||||| ||||||||| || | |  ||||||||||| ||||||||| ||  |||||| || |||| |  |||||||| |||    
T  12710715 atttatttaacgagcttaattttcaactcaagttcgactcatttggttcatgaaccaagttcaacgagtcaattatcgaatcgaatctcgaactattttc 12710814  T
Q  228 gatttggttcgcttcattgc 247  Q
    || |||||||| ||||||||    
T  12710815 gagttggttcggttcattgc 12710834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 88 - 247
Target Start/End: Complemental strand, 54393610 - 54393451
Alignment:
Q  88 aaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagt 187  Q
    |||||| |||||| |||||||||||| |||||||  ||| | |||||| ||||||||||||||||||||||||||  | | |  |||| |||||| ||||    
T  54393610 aaccaaacgagtcgaactacatatagttcaagttcggctcaattatttgacgaacttaattttcagctcaagttcggctcatttggtttatgaaccaagt 54393511  T
Q  188 tcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattgc 247  Q
    ||||| |   |||| | || |||| || |||||| || |||| |||||||| ||||||||    
T  54393510 tcaacgaatcaattgtcgaatcgaattacgaactttaatcgagttggttcggttcattgc 54393451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 117 - 247
Target Start/End: Original strand, 39135356 - 39135486
Alignment:
Q  117 aagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagcaaattattgagtcgagttcc 216  Q
    ||||| |||| ||||| |||||||||||||||||||||||||||||  | | |  ||||||||||| ||||||||  | | |||| | ||||||| ||      
T  39135356 aagttcagctcatttaattaacgaacttaattttcagctcaagttcggctcatttggttcatgaaccaagttcaatgaaccaattgtcgagtcgaattat 39135455  T
Q  217 gaactatattcgatttggttcgcttcattgc 247  Q
    ||||||||||||| |||||||| || |||||    
T  39135456 gaactatattcgagttggttcggtttattgc 39135486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 59 - 164
Target Start/End: Complemental strand, 53529786 - 53529681
Alignment:
Q  59 atatacatatattgtcaagtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaa 158  Q
    ||||||||||||  || ||||| ||  | |||||| |||||| ||| |||||||| ||||||| |||| | ||| || ||||||||||||||||||||||    
T  53529786 atatacatatataatcgagtcatcttgtgaaccaaacgagtcgaacaacatatagttcaagttcagctcaattagttgacgaacttaattttcagctcaa 53529687  T
Q  159 gttcaa 164  Q
    ||||||    
T  53529686 gttcaa 53529681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 88 - 192
Target Start/End: Complemental strand, 33438898 - 33438794
Alignment:
Q  88 aaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagt 187  Q
    |||||| | |||| |||||||||||| |||| || |||| | ||| || |||||||||||||||||||||||||| || | |  ||||||||||| ||||    
T  33438898 aaccaaacaagtcgaactacatatagttcaactttagctcaattagttgacgaacttaattttcagctcaagttcgactcatttggttcatgaaccaagt 33438799  T
Q  188 tcaac 192  Q
    |||||    
T  33438798 tcaac 33438794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 80 - 163
Target Start/End: Original strand, 50965368 - 50965452
Alignment:
Q  80 aactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaa-ttttcagctcaagttca 163  Q
    ||||||| | |||| |||||| ||| | |||||||||||||| |||| ||||||||||||||||||| |||||||||||| ||||    
T  50965368 aactcatgagccaatcgagtcgaaccatatatagctcaagttcagctcatttatttaacgaacttaatttttcagctcaaattca 50965452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 80 - 163
Target Start/End: Original strand, 51068503 - 51068587
Alignment:
Q  80 aactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaa-ttttcagctcaagttca 163  Q
    ||||||| | |||| |||||| ||| | |||||||||||||| |||| ||||||||||||||||||| |||||||||||| ||||    
T  51068503 aactcatgagccaatcgagtcgaaccatatatagctcaagttcagctcatttatttaacgaacttaatttttcagctcaaattca 51068587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 97 - 247
Target Start/End: Complemental strand, 23206465 - 23206316
Alignment:
Q  97 agtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagc 196  Q
    |||| ||||| || ||||| ||||| |||| ||||| |||| |||||||||||||||||||||| || | |||  ||||||||||| ||||||||||       
T  23206465 agtcgaactatatgtagcttaagttcagctcatttaattaa-gaacttaattttcagctcaagtccagctcgttaggttcatgaacaaagttcaacagat 23206367  T
Q  197 aaattattgagtcgagttccgaactatattcgatttggttcgcttcattgc 247  Q
     || |||  |||||| |  ||||||||| |||| |||||||| ||||||||    
T  23206366 taaatatcaagtcgaatgtcgaactataatcgagttggttcggttcattgc 23206316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 115 - 237
Target Start/End: Complemental strand, 39469671 - 39469549
Alignment:
Q  115 tcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagcaaattattgagtcgagtt 214  Q
    ||||||| |||| ||||| |||||||||||||||||||||||||||||  | | |  | ||||||||| ||||||||    | |||||| || |||| ||    
T  39469671 tcaagtttagctcatttaattaacgaacttaattttcagctcaagttcggctcatttgattcatgaaccaagttcaatggaccaattatcgaatcgaatt 39469572  T
Q  215 ccgaactatattcgatttggttc 237  Q
     |||||||||||||| |||||||    
T  39469571 acgaactatattcgagttggttc 39469549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 128 - 247
Target Start/End: Complemental strand, 26049667 - 26049548
Alignment:
Q  128 atttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagcaaattattgagtcgagttccgaactatattc 227  Q
    ||||||||||||| ||||||||||| ||||||||| || | |  | ||||||||| |||||||||| |  |||||| || |||| |  | |||||| |||    
T  26049667 atttatttaacgagcttaattttcaactcaagttcgactcatttgattcatgaaccaagttcaacaggtcaattatcgaatcgaatctcaaactattttc 26049568  T
Q  228 gatttggttcgcttcattgc 247  Q
    || |||||||| ||||||||    
T  26049567 gagttggttcggttcattgc 26049548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 80 - 247
Target Start/End: Original strand, 44574491 - 44574658
Alignment:
Q  80 aactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatg 179  Q
    ||||||| |||||| |||| | ||||| || |||||||||||  ||| ||||| | ||||||||| ||||| | |||||||||| | | |  |||||| |    
T  44574491 aactcatgaaccaaacgagccgaactatatgtagctcaagttcggctcatttaataaacgaacttgatttttaactcaagttcagctcattaggttcacg 44574590  T
Q  180 aactaagttcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattgc 247  Q
    ||||||||||||| |   ||||   |||||||| | |||||||||||||| |||  ||| ||||||||    
T  44574591 aactaagttcaacgaattaattgccgagtcgagcttcgaactatattcgagttgtctcggttcattgc 44574658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 75 - 162
Target Start/End: Complemental strand, 46293393 - 46293306
Alignment:
Q  75 aagtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttc 162  Q
    |||||| ||||| |||||| ||| || |||||  ||||| | ||||| | || ||||| |||||||||||||||||||||||||||||    
T  46293393 aagtcatctcatgaaccaaacgaatcgaactatttatagtttaagttcaactcatttaattaacgaacttaattttcagctcaagttc 46293306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 246
Target Start/End: Complemental strand, 20550329 - 20550211
Alignment:
Q  128 atttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagcaaattattgagtcgagttccgaactatattc 227  Q
    |||||||||||||| |||||||||| |||| |||| || | |  ||||| ||||| |||||||||||   |||||| || ||||||  |||||||| |||    
T  20550329 atttatttaacgaatttaattttcaactcatgttcgactcatttggttcgtgaaccaagttcaacaaatcaattatcgaatcgagtatcgaactattttc 20550230  T
Q  228 gatttggttcgcttcattg 246  Q
    || |||||| | |||||||    
T  20550229 gagttggtttggttcattg 20550211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 28700809 - 28700851
Alignment:
Q  1 gcaaacaacccaaaacaaaaatacaagtacaccaaaactagtg 43  Q
    |||||||||||||||||||||| ||||||| ||||||||||||    
T  28700809 gcaaacaacccaaaacaaaaatccaagtactccaaaactagtg 28700851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 108 - 165
Target Start/End: Original strand, 18074569 - 18074626
Alignment:
Q  108 atatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaac 165  Q
    ||||||||||| || |||| ||||| |||||||||||||||||||| |||| ||||||    
T  18074569 atatagctcaatttcagctcatttagttaacgaacttaattttcagttcaaattcaac 18074626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 136 - 245
Target Start/End: Original strand, 30743593 - 30743702
Alignment:
Q  136 aacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagcaaattattgagtcgagttccgaactatattcgatttggt 235  Q
    ||||||||||||| ||| ||||| |||| | | |  ||||||||||| ||||||||| ||   ||  | |||||||| |||||||||||||||| |||||    
T  30743593 aacgaacttaattctcaactcaaattcagctcatttggttcatgaaccaagttcaacgagttcatcttcgagtcgagctccgaactatattcgagttggt 30743692  T
Q  236 tcgcttcatt 245  Q
    ||| ||||||    
T  30743693 tcggttcatt 30743702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 247
Target Start/End: Original strand, 40943561 - 40943693
Alignment:
Q  115 tcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagcaaattattgagtcgagtt 214  Q
    ||||||| | || ||||||||||||| ||||||||||| ||||||||| || | |  ||||||||||| |||| |||  | | ||||||  | ||||||     
T  40943561 tcaagttcaactcatttatttaacgagcttaattttcaactcaagttcgactcatttggttcatgaaccaagtccaatgaaccaattatcaaatcgagta 40943660  T
Q  215 ccgaactatattcgatttggttcgcttcattgc 247  Q
     |||||||| ||||| |||||||| || |||||    
T  40943661 tcgaactattttcgagttggttcggtttattgc 40943693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 238
Target Start/End: Complemental strand, 30662258 - 30662148
Alignment:
Q  128 atttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagcaaattattgagtcgagttccgaactatattc 227  Q
    ||||||||||||| ||||||||||| ||||||||| || | |  | ||||||||| ||||||||| ||  |||||| || |||| |  | |||||| |||    
T  30662258 atttatttaacgagcttaattttcaactcaagttcgactcatttgattcatgaaccaagttcaacgagtcaattatcgaatcgaatctcaaactattttc 30662159  T
Q  228 gatttggttcg 238  Q
    || ||||||||    
T  30662158 gagttggttcg 30662148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 29536579 - 29536643
Alignment:
Q  97 agtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagtt 161  Q
    |||||||||| | ||| | |||||| | ||||||||||||||||  |||||||||| ||||||||    
T  29536579 agtcaaactatacatatcacaagttcaacttatttatttaacgagtttaattttcaactcaagtt 29536643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 45995287 - 45995335
Alignment:
Q  102 aactacatatagctcaagttgagcttatttatttaacgaacttaatttt 150  Q
    ||||||||||| |||||||| |||||| ||| || ||||||||||||||    
T  45995287 aactacatataactcaagttcagcttaattagttgacgaacttaatttt 45995335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 50)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 76 - 246
Target Start/End: Complemental strand, 11055405 - 11055235
Alignment:
Q  76 agtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggtt 175  Q
    ||||| ||||| |||||| |||||| ||||| ||| ||||||||||  ||| |||||||||||||||||||||||| ||||||||||| | | |  ||||    
T  11055405 agtcagctcatgaaccaatcgagtcgaactatatacagctcaagttcggctcatttatttaacgaacttaattttccgctcaagttcagctcatttggtt 11055306  T
Q  176 catgaactaagttcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattg 246  Q
    ||||||| ||||||||  ||  |||||| || ||||||||||||||||  |||| |||||||| |||||||    
T  11055305 catgaaccaagttcaatgagttaattatcgaatcgagttccgaactattgtcgagttggttcggttcattg 11055235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 79 - 247
Target Start/End: Original strand, 22184467 - 22184635
Alignment:
Q  79 caactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcat 178  Q
    ||||| || ||||||| ||||| ||||| ||| || ||||||| |||| |||| ||||||||||||||||||||||||||||||| | |||  |||||||    
T  22184467 caacttatgaaccaactgagtcgaactatataaagttcaagttcagctcatttgtttaacgaacttaattttcagctcaagttcagctcgtttggttcat 22184566  T
Q  179 gaactaagttcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattgc 247  Q
    |||| ||||||||| ||  |||| | || |||||| || ||||||  |||| |||||||| ||||||||    
T  22184567 gaaccaagttcaacgagttaattgtcgaatcgagtcccaaactattgtcgagttggttcggttcattgc 22184635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 79 - 192
Target Start/End: Original strand, 52813565 - 52813678
Alignment:
Q  79 caactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcat 178  Q
    |||||||| |||||||||| || ||||| ||| |||||||||| |||| |||| ||||||||||||||||||||||| ||||||| | |||  |||||||    
T  52813565 caactcatgaaccaaccgaatcgaactatataaagctcaagttcagctcatttgtttaacgaacttaattttcagcttaagttcagctcgtttggttcat 52813664  T
Q  179 gaactaagttcaac 192  Q
    |||| |||||||||    
T  52813665 gaaccaagttcaac 52813678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 82 - 192
Target Start/End: Original strand, 50605975 - 50606085
Alignment:
Q  82 ctcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaa 181  Q
    |||||||||| | |||||| ||||| || ||||||||||| |||| ||||| ||||||||||||||||||||||||||| || | |||  ||||||||||    
T  50605975 ctcataaacctaacgagtcgaactatatgtagctcaagttcagctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaa 50606074  T
Q  182 ctaagttcaac 192  Q
    | |||||||||    
T  50606075 ccaagttcaac 50606085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 83 - 247
Target Start/End: Complemental strand, 48151298 - 48151134
Alignment:
Q  83 tcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaac 182  Q
    |||| |||||||||| | |||||| ||| | ||||||||   ||||||||||||||||||||||||||||||||||||||| | | |  ||||  |||||    
T  48151298 tcatgaaccaaccgaattaaactatatacaactcaagttcgacttatttatttaacgaacttaattttcagctcaagttcagctcatttggtttgtgaac 48151199  T
Q  183 taagttcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattgc 247  Q
     ||||||||||||  |||| | || ||||||| ||||||||  |||| ||||||||  |||||||    
T  48151198 caagttcaacaagataattgtcgaatcgagtttcgaactattgtcgagttggttcgaatcattgc 48151134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 82 - 192
Target Start/End: Original strand, 19852945 - 19853055
Alignment:
Q  82 ctcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaa 181  Q
    ||||| |||| | |||||| ||||| || ||||||||||| |||| ||||| ||||||||||||||||||||||||||| || | |||  ||||||||||    
T  19852945 ctcatgaacctaacgagtcgaactatatgtagctcaagttcagctcatttaattaacgaacttaattttcagctcaagtccatctcgttaggttcatgaa 19853044  T
Q  182 ctaagttcaac 192  Q
    | |||||||||    
T  19853045 ccaagttcaac 19853055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 82 - 192
Target Start/End: Original strand, 21441548 - 21441658
Alignment:
Q  82 ctcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaa 181  Q
    ||||| |||| | |||||| ||||| || ||||||||||| |||| ||||| ||||||||||||||||||||||||||| || | |||  ||||||||||    
T  21441548 ctcatgaacctaacgagtcgaactatatgtagctcaagttcagctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaa 21441647  T
Q  182 ctaagttcaac 192  Q
    | |||||||||    
T  21441648 ccaagttcaac 21441658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 82 - 192
Target Start/End: Original strand, 53369839 - 53369949
Alignment:
Q  82 ctcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaa 181  Q
    ||||| |||| | |||||| ||||| || ||||||||||| |||| ||||| ||||||||||||||||||||||||||| || | |||  ||||||||||    
T  53369839 ctcatgaacctaacgagtcgaactatatgtagctcaagttcagctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaa 53369938  T
Q  182 ctaagttcaac 192  Q
    | |||||||||    
T  53369939 ccaagttcaac 53369949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 59 - 247
Target Start/End: Original strand, 26632880 - 26633068
Alignment:
Q  59 atatacatatattgtcaagtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaa 158  Q
    ||||| ||||||| || || |||||||| |||||||  ||||  |||| || ||  |||||||  ||| |||||||||||||||||||||||||||||||    
T  26632880 atatatatatattatcgagccaactcatgaaccaactaagtcggactatatgtaattcaagttcggctcatttatttaacgaacttaattttcagctcaa 26632979  T
Q  159 gttcaacccgtccggttcatgaactaagttcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattgc 247  Q
    ||||| | | |  |||| |||| | ||||||||| ||  |||| | || ||||||| ||||||||  |||| |||||||| ||||||||    
T  26632980 gttcagctcatttggttaatgagccaagttcaacgagttaattgtcgaatcgagttacgaactattatcgagttggttcggttcattgc 26633068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 194
Target Start/End: Complemental strand, 48339295 - 48339160
Alignment:
Q  59 atatacatatattgtcaagtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaa 158  Q
    ||||| ||||||| || ||| | ||| | |||||| |||||| |||||||||||||| ||||| |||| | ||| || ||||||||||||||||||||||    
T  48339295 atatatatatattatcgagttatctcgtgaaccaaacgagtcgaactacatatagcttaagttcagctcaattagttgacgaacttaattttcagctcaa 48339196  T
Q  159 gttcaacccgtccggttcatgaactaagttcaacaa 194  Q
    |||| || | |  | ||||||||| |||||||||||    
T  48339195 gttcgactcatttgattcatgaaccaagttcaacaa 48339160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 192
Target Start/End: Complemental strand, 12789705 - 12789615
Alignment:
Q  102 aactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaac 192  Q
    ||||| || ||||||||||| |||| ||||| |||||||||||||||||||||||||||||| | |||  ||||||| ||| |||||||||    
T  12789705 aactatatgtagctcaagttcagctcatttaattaacgaacttaattttcagctcaagttcagctcgttaggttcataaaccaagttcaac 12789615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 82 - 192
Target Start/End: Original strand, 49820949 - 49821059
Alignment:
Q  82 ctcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaa 181  Q
    ||||| |||| | |||||| ||||| || ||||||||||| |||| ||||| |||||||||||||||||||||| |||| || | |||  ||||||||||    
T  49820949 ctcatgaacctaacgagtcgaactatatgtagctcaagttcagctcatttaattaacgaacttaattttcagcttaagtccagctcgttaggttcatgaa 49821048  T
Q  182 ctaagttcaac 192  Q
    | |||||||||    
T  49821049 ccaagttcaac 49821059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 109 - 246
Target Start/End: Original strand, 9469771 - 9469908
Alignment:
Q  109 tatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagcaaattattgagt 208  Q
    ||||| ||||||| |||| ||||| | ||||||||||||||||||||||||||   | | |  ||||||||||| |||||||| |  | |||| | ||||    
T  9469771 tatagttcaagttcagctcatttaatcaacgaacttaattttcagctcaagtttggctcatttggttcatgaaccaagttcaatagaccaattgtcgagt 9469870  T
Q  209 cgagttccgaactatattcgatttggttcgcttcattg 246  Q
    ||| || |||||||||||||| |||||||| |||||||    
T  9469871 cgaattacgaactatattcgagttggttcggttcattg 9469908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 83 - 192
Target Start/End: Complemental strand, 24008075 - 24007966
Alignment:
Q  83 tcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaac 182  Q
    |||| |||||| |||||| ||| | || ||||||||||| | || ||||||||||||||||||||||| | |||||||| ||| |||  |||||||||||    
T  24008075 tcatgaaccaaacgagtcgaaccatatttagctcaagttcaactcatttatttaacgaacttaattttaaactcaagtttaactcgttaggttcatgaac 24007976  T
Q  183 taagttcaac 192  Q
     |||||||||    
T  24007975 caagttcaac 24007966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 83 - 247
Target Start/End: Original strand, 22721296 - 22721459
Alignment:
Q  83 tcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaac 182  Q
    |||| |||||| |||||| ||||| ||||| |||||||| | || ||||||||||||||||||||||| |||| |||||   | |||  |||||||||||    
T  22721296 tcatgaaccaaacgagtcgaactatatataactcaagttcaactcatttatttaacgaacttaatttt-agcttaagtttgcctcgtttggttcatgaac 22721394  T
Q  183 taagttcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattgc 247  Q
     ||||||||  | | |||||  || |||||||||||||| ||||||| |||  ||| ||||||||    
T  22721395 caagttcaatgaactaattaccgaatcgagttccgaactttattcgagttgtctcgattcattgc 22721459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 76 - 192
Target Start/End: Complemental strand, 44791422 - 44791306
Alignment:
Q  76 agtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggtt 175  Q
    ||||| ||||| |||| | |||||| ||||| || |||||||| || |||| ||||| |||||||||||||||||||| |||||| || | |||  ||||    
T  44791422 agtcatctcatgaacctaacgagtcgaactatatgtagctcaaattcagctcatttaattaacgaacttaattttcagttcaagtgcagctcgttaggtt 44791323  T
Q  176 catgaactaagttcaac 192  Q
    ||||||| |||||||||    
T  44791322 catgaaccaagttcaac 44791306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 162
Target Start/End: Complemental strand, 36156461 - 36156387
Alignment:
Q  88 aaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttc 162  Q
    |||||| |||||| |||||||||||| ||||||| |||| | ||| || ||||||||||||||||||||||||||    
T  36156461 aaccaaacgagtcgaactacatatagttcaagttcagctcaattagttgacgaacttaattttcagctcaagttc 36156387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 160
Target Start/End: Original strand, 53369655 - 53369733
Alignment:
Q  82 ctcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagt 160  Q
    ||||| |||| | |||||| ||||| || ||||||||||| |||| ||||| |||||||||||||||||||||||||||    
T  53369655 ctcatgaacctaacgagtcgaactatatgtagctcaagttcagctcatttaattaacgaacttaattttcagctcaagt 53369733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 125 - 246
Target Start/End: Complemental strand, 46944674 - 46944553
Alignment:
Q  125 cttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagcaaattattgagtcgagttccgaactata 224  Q
    |||||||||||||||| ||||| ||||| ||||||||| || | |  ||||||||||| ||||||||| ||| |||||| || |||| |  ||||||||     
T  46944674 cttatttatttaacgagcttaaatttcaactcaagttcgactcatttggttcatgaaccaagttcaacgagccaattatcgaatcgaatctcgaactatt 46944575  T
Q  225 ttcgatttggttcgcttcattg 246  Q
    || || |||||||| |||||||    
T  46944574 tttgagttggttcggttcattg 46944553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 82 - 247
Target Start/End: Original strand, 48977543 - 48977708
Alignment:
Q  82 ctcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaa 181  Q
    ||||| |||| | |||||| ||||| || ||||||||||| |||| ||||| |||||||| ||||||||||||||| || || | | |  ||||||||||    
T  48977543 ctcatgaaccgaacgagtcgaactatatgtagctcaagttcagctcatttaattaacgaatttaattttcagctcatgtccagctcattaggttcatgaa 48977642  T
Q  182 ctaagttcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattgc 247  Q
    | ||||||||| |   || ||| ||||||| |  |||| |||| |||| |||||||| ||||||||    
T  48977643 cgaagttcaacgaattaaatatcgagtcgaatgtcgaattataatcgagttggttcggttcattgc 48977708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 6866256 - 6866196
Alignment:
Q  102 aactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttc 162  Q
    |||||||||||||||||||| |||| | ||| || ||||||||||||||||||||||||||    
T  6866256 aactacatatagctcaagttcagctcaattagttgacgaacttaattttcagctcaagttc 6866196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 65 - 157
Target Start/End: Complemental strand, 16742515 - 16742423
Alignment:
Q  65 atatattgtcaagtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctca 157  Q
    ||||||| || ||||| ||||| |||||| ||| || ||||| ||| | |||||||| |||| ||||||||||||||||||||||||| ||||    
T  16742515 atatattatcgagtcagctcatgaaccaatcgaatcgaactatatacaactcaagttcagctcatttatttaacgaacttaattttcaactca 16742423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 82 - 246
Target Start/End: Original strand, 27891354 - 27891517
Alignment:
Q  82 ctcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaa 181  Q
    ||||| ||||||||||||| ||||| ||| |  |||| || |||| ||||||||||| || || |||||||||||||||||| | | |   |||||||||    
T  27891354 ctcatgaaccaaccgagtcgaactatataaaattcaaattcagctcatttatttaacaaatttgattttcagctcaagttcagctcat-ttgttcatgaa 27891452  T
Q  182 ctaagttcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattg 246  Q
    | ||||||||| ||  |||| | || ||||||||||||||||  |||| ||| |||| |||||||    
T  27891453 ccaagttcaacgagttaattgtcgaatcgagttccgaactattgtcgagttgattcgattcattg 27891517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 95 - 247
Target Start/End: Original strand, 52706197 - 52706349
Alignment:
Q  95 cgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaa 194  Q
    |||||| ||||| ||||| |||||||| | || ||||| |||||||||||||| || |||||||||||  | |||  ||||||||||| ||||| ||| |    
T  52706197 cgagtcgaactatatataactcaagttcaactcatttagttaacgaacttaatctttagctcaagttcggctcgtttggttcatgaaccaagtttaacga 52706296  T
Q  195 gcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattgc 247  Q
     | |||||  ||||| ||||||||| | ||||||| |||  ||| ||||||||    
T  52706297 actaattaccgagtcaagttccgaattttattcgagttgtatcggttcattgc 52706349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 157
Target Start/End: Original strand, 9959342 - 9959385
Alignment:
Q  114 ctcaagttgagcttatttatttaacgaacttaattttcagctca 157  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  9959342 ctcaagttcagcttatttatttaacgaacttaattttcagctca 9959385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 247
Target Start/End: Complemental strand, 12673155 - 12673036
Alignment:
Q  128 atttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagcaaattattgagtcgagttccgaactatattc 227  Q
    |||||||||| || ||||||||||| ||||||||| || | |  ||||||||||| ||||||||| ||  |||||| || |||| |  |||||||| |||    
T  12673155 atttatttaatgagcttaattttcaactcaagttcgactcatttggttcatgaaccaagttcaacgagtcaattatcgaatcgaatctcgaactattttc 12673056  T
Q  228 gatttggttcgcttcattgc 247  Q
    || |||||||| ||||||||    
T  12673055 gagttggttcggttcattgc 12673036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 189
Target Start/End: Original strand, 45674802 - 45674909
Alignment:
Q  82 ctcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaa 181  Q
    ||||| |||| | |||||| ||||| || ||||||||||| | || ||||| |||||||| |||||||||||||||||| || | |||  ||||||||||    
T  45674802 ctcatgaacctaacgagtcgaactatatgtagctcaagttcaactcatttaattaacgaatttaattttcagctcaagtccagctcgttaggttcatgaa 45674901  T
Q  182 ctaagttc 189  Q
    | ||||||    
T  45674902 ccaagttc 45674909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 129 - 247
Target Start/End: Original strand, 51995092 - 51995210
Alignment:
Q  129 tttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagcaaattattgagtcgagttccgaactatattcg 228  Q
    |||||||||| ||||||||||| |||||||||||  | | |  ||||||||||| ||||||||| |   |||||| || ||||||  |||||||| ||||    
T  51995092 tttatttaacaaacttaattttgagctcaagttcggctcatttggttcatgaaccaagttcaacgaattaattatcgaatcgagtctcgaactattttcg 51995191  T
Q  229 atttggttcgcttcattgc 247  Q
    | |||||||| ||||||||    
T  51995192 agttggttcggttcattgc 51995210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 108 - 246
Target Start/End: Original strand, 56224138 - 56224276
Alignment:
Q  108 atatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagcaaattattgag 207  Q
    |||||| ||||||| | |||||||| |||||||| ||||||||||||||||||||  | | |  |||| || ||| ||||||||| |   |||| |||||    
T  56224138 atatagttcaagttcaacttatttaattaacgaatttaattttcagctcaagttcggctcatttggtttattaaccaagttcaacgaattaattgttgag 56224237  T
Q  208 tcgagttccgaactatattcgatttggttcgcttcattg 246  Q
    || |||| |||||||| || || |||||||| |||||||    
T  56224238 tcaagtttcgaactatgtttgagttggttcggttcattg 56224276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 189
Target Start/End: Complemental strand, 5769242 - 5769181
Alignment:
Q  128 atttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttc 189  Q
    |||||||||||||| |||||||||||||||| |||||||| |  ||||||||||| ||||||    
T  5769242 atttatttaacgaatttaattttcagctcaaattcaacccatttggttcatgaaccaagttc 5769181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 162
Target Start/End: Original strand, 34718121 - 34718186
Alignment:
Q  97 agtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttc 162  Q
    |||| ||||| ||| ||||||| || ||||||||||||||||||| ||||||||||||| ||||||    
T  34718121 agtcgaactatatacagctcaatttaagcttatttatttaacgaaattaattttcagctgaagttc 34718186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 246
Target Start/End: Original strand, 36543775 - 36543912
Alignment:
Q  109 tatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagcaaattattgagt 208  Q
    ||||| ||||||| |||| ||||| ||||||||||||||||||||||||||||   |   |  ||||||||||| ||||||||    | |||| | ||||    
T  36543775 tatagttcaagttcagctcatttaattaacgaacttaattttcagctcaagtttggcttatttggttcatgaaccaagttcaatggaccaattgtcgagt 36543874  T
Q  209 cgagttccgaactatattcgatttggttcgcttcattg 246  Q
    ||| || |||||||||||||| |||||||  |||||||    
T  36543875 cgaattacgaactatattcgagttggttcagttcattg 36543912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 115 - 247
Target Start/End: Original strand, 40797830 - 40797962
Alignment:
Q  115 tcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagcaaattattgagtcgagtt 214  Q
    ||||||| | || ||||||||||||| ||||||||||| ||||||||| || | |  ||||||||||| ||||||||  | | |||||| || || |||     
T  40797830 tcaagttcaactcatttatttaacgagcttaattttcaactcaagttcgactcatttggttcatgaaccaagttcaatgaaccaattatcgaatcaagta 40797929  T
Q  215 ccgaactatattcgatttggttcgcttcattgc 247  Q
     |||||||| || || |||||||| ||||||||    
T  40797930 tcgaactatttttgagttggttcggttcattgc 40797962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 79 - 155
Target Start/End: Original strand, 43387232 - 43387308
Alignment:
Q  79 caactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagct 155  Q
    |||||||| ||||||||||||| ||||| ||| || ||||||| |||| |||| ||||||| | |||||||||||||    
T  43387232 caactcatgaaccaaccgagtcgaactatataaagttcaagttcagctcatttgtttaacggatttaattttcagct 43387308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 76 - 192
Target Start/End: Complemental strand, 52733879 - 52733764
Alignment:
Q  76 agtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggtt 175  Q
    ||||||| ||| || ||||  |||||||||| ||| |  | ||||| | |||||||||||||||||||||||||||||||||| |||||| | |  ||||    
T  52733879 agtcaacccatgaaacaacgcagtcaaactatatacaatttaagttcaacttatttatttaacgaacttaattttcagctcaa-ttcaactcatttggtt 52733781  T
Q  176 catgaactaagttcaac 192  Q
    |||||| ||| ||||||    
T  52733780 catgaattaaattcaac 52733764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 95 - 246
Target Start/End: Original strand, 7505509 - 7505660
Alignment:
Q  95 cgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaa 194  Q
    ||||||| |||| ||||| |||||||| | || ||||| |||||||| |||||||| |||||||||||  | | |  ||||||||||  ||||||||| |    
T  7505509 cgagtcagactatatataactcaagttcaactcatttagttaacgaatttaatttttagctcaagttcggctcatttggttcatgaatcaagttcaacga 7505608  T
Q  195 gcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattg 246  Q
     | |||||  ||||| ||||| ||||| ||||||| |||  ||| |||||||    
T  7505609 actaattaccgagtcaagttctgaactttattcgagttgtatcggttcattg 7505660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 246
Target Start/End: Complemental strand, 49083381 - 49083243
Alignment:
Q  108 atatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagcaaattattgag 207  Q
    ||||| |||||||  |||| ||||| |||||||| ||||||||||| ||||||||||| | |  |||| |||||| ||||||||||  | |||||| |||    
T  49083381 atataactcaagtacagctcatttaattaacgaatttaattttcagatcaagttcaactcattaggtttatgaaccaagttcaacagactaattatcgag 49083282  T
Q  208 tcgagttccgaactatattcgatttggttcgcttcattg 246  Q
    || | || | ||||||  || | |||||||| |||||||    
T  49083281 tccaatttcaaactattctcaagttggttcgattcattg 49083243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 88 - 157
Target Start/End: Complemental strand, 38493144 - 38493075
Alignment:
Q  88 aaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctca 157  Q
    |||||| ||||||||| || ||||| |||||||| | || ||||| ||||| ||||||||||||||||||    
T  38493144 aaccaaacgagtcaaattatatataactcaagttcaactcatttaattaacaaacttaattttcagctca 38493075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 111 - 192
Target Start/End: Original strand, 44378246 - 44378327
Alignment:
Q  111 tagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaac 192  Q
    ||||||||||| | || ||||||||||||| ||||||||||| | ||| |||||| | |  ||||||||||| |||||||||    
T  44378246 tagctcaagttcaactcatttatttaacgagcttaattttcaacccaaattcaactcatttggttcatgaaccaagttcaac 44378327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 88 - 249
Target Start/End: Complemental strand, 50147085 - 50146924
Alignment:
Q  88 aaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagt 187  Q
    |||||| |||| | ||||||||||| || ||||| |||| | ||| || |||||||||||||||||||||||| |    | |  ||||||||||| ||||    
T  50147085 aaccaaacgagccgaactacatataacttaagttcagctcaattagttcacgaacttaattttcagctcaagtccggttcatttggttcatgaaccaagt 50146986  T
Q  188 tcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattgcta 249  Q
    ||||| |   |||| | || |||| || |||||| || |||| |||||||| ||||||||||    
T  50146985 tcaacgaatcaattgtcgaatcgaattacgaactttaatcgaattggttcggttcattgcta 50146924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 187
Target Start/End: Original strand, 25134574 - 25134646
Alignment:
Q  115 tcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagt 187  Q
    ||||||| | || ||||||||||||||||||||||||| ||||||||| || | |  ||||||||||| ||||    
T  25134574 tcaagttcaactcatttatttaacgaacttaattttcaactcaagttcgactcatttggttcatgaaccaagt 25134646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 38791693 - 38791748
Alignment:
Q  76 agtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttattt 131  Q
    ||||| ||||| ||||||||||||||||||| ||| |||||||||| |||| ||||    
T  38791693 agtcagctcatgaaccaaccgagtcaaactatatacagctcaagttcagctcattt 38791748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 123 - 246
Target Start/End: Complemental strand, 48731305 - 48731182
Alignment:
Q  123 agcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagcaaattattgagtcgagttccgaacta 222  Q
    |||| ||||| ||||||||||||||||| ||||||||||||     |  ||||||||||| || |||||    | |||| | ||||||| || |||||||    
T  48731305 agctcatttaattaacgaacttaatttttagctcaagttcagtttatttggttcatgaaccaaattcaatggaccaattgtcgagtcgaatttcgaacta 48731206  T
Q  223 tattcgatttggttcgcttcattg 246  Q
    ||||||| |||||||| |||||||    
T  48731205 tattcgagttggttcggttcattg 48731182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 189
Target Start/End: Complemental strand, 43812217 - 43812123
Alignment:
Q  95 cgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttc 189  Q
    |||||| |||||||| ||| ||||||| |||| | ||| || ||||||||||||||||| | ||||||  ||| |  ||||||||||| ||||||    
T  43812217 cgagtcgaactacatctagttcaagttcagctcaattagtttacgaacttaattttcagtttaagttcggcccatttggttcatgaaccaagttc 43812123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 192
Target Start/End: Original strand, 80497 - 80574
Alignment:
Q  115 tcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaac 192  Q
    |||||||  ||| |||||||| |||| ||||||||||| ||||||||| || | |  ||||||||||| |||||||||    
T  80497 tcaagttcggctcatttatttgacgagcttaattttcaactcaagttcgactcatttggttcatgaaccaagttcaac 80574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 189
Target Start/End: Complemental strand, 5762672 - 5762611
Alignment:
Q  128 atttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttc 189  Q
    |||||||||||||| ||||||||||||||||  ||||| | |  ||||||||||| ||||||    
T  5762672 atttatttaacgaatttaattttcagctcaaactcaactcatttggttcatgaaccaagttc 5762611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 163
Target Start/End: Complemental strand, 15697260 - 15697175
Alignment:
Q  78 tcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttca 163  Q
    ||||||||| |||||| ||||||  ||||  | ||| ||| ||| |||| ||| | ||||||||||||||||| ||||||||||||    
T  15697260 tcaactcatgaaccaaacgagtcggactatgtttagttcatgttcagctcattaagttaacgaacttaatttttagctcaagttca 15697175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 165
Target Start/End: Original strand, 24550050 - 24550127
Alignment:
Q  88 aaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaac 165  Q
    |||||| |||||| | ||| | ||| |||||||| | || ||||| ||||| ||||||||||| ||||||||||||||    
T  24550050 aaccaaacgagtcgagctatacataactcaagttcaactcatttagttaacaaacttaatttttagctcaagttcaac 24550127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 161
Target Start/End: Original strand, 13455715 - 13455747
Alignment:
Q  129 tttatttaacgaacttaattttcagctcaagtt 161  Q
    |||||||||||||||||||||| ||||||||||    
T  13455715 tttatttaacgaacttaattttgagctcaagtt 13455747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 192
Target Start/End: Complemental strand, 19455305 - 19455221
Alignment:
Q  108 atatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaac 192  Q
    |||||||||||||| | || |||||  |||| ||||||||||||| |||||||||| | | |  | ||||||||| |||||||||    
T  19455305 atatagctcaagttcaactcatttagataacaaacttaattttcaactcaagttcagctcatttgattcatgaaccaagttcaac 19455221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 82 - 247
Target Start/End: Original strand, 3307901 - 3308066
Alignment:
Q  82 ctcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaa 181  Q
    |||||||||||| |||||| ||||| ||| ||||||||||  ||| |||||||||||||||||||||||| ||||||||||  | | |  ||||||||||    
T  3307901 ctcataaaccaatcgagtcgaactatatacagctcaagttcggctcatttatttaacgaacttaattttctgctcaagttcggctcatttggttcatgaa 3308000  T
Q  182 ctaagttcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattgc 247  Q
    |||||||| || ||  |||| | || ||||||||||||||||  |||| |||||||| ||||||||    
T  3308001 ctaagttctacgagttaattgtcgaatcgagttccgaactattgtcgagttggttcggttcattgc 3308066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 88 - 247
Target Start/End: Original strand, 34655008 - 34655167
Alignment:
Q  88 aaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagt 187  Q
    |||||| |||||| ||||| ||||| |||||||| | || ||||| ||||| |||||||| || ||||||||||| || |||  ||||||||||||||||    
T  34655008 aaccaaacgagtcgaactatatataactcaagtttaactcatttagttaacaaacttaatctttagctcaagttcgactcgtttggttcatgaactaagt 34655107  T
Q  188 tcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattgc 247  Q
    ||||||| | |||||  ||||||||||||||||| ||||||| |||  ||| ||||||||    
T  34655108 tcaacaaactaattaccgagtcgagttccgaactttattcgagttgtatcggttcattgc 34655167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 82 - 192
Target Start/End: Original strand, 11161539 - 11161649
Alignment:
Q  82 ctcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaa 181  Q
    ||||| |||| | |||||| ||||| || ||||||||||| |||| ||||| ||||||||||||||||||||||||||| || | |||  ||||||||||    
T  11161539 ctcatgaacctaacgagtcgaactatatgtagctcaagttcagctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaa 11161638  T
Q  182 ctaagttcaac 192  Q
    | |||||||||    
T  11161639 ccaagttcaac 11161649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 88 - 221
Target Start/End: Original strand, 43967483 - 43967616
Alignment:
Q  88 aaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagt 187  Q
    |||||| |||||| ||||| ||||| |||||||| | || ||||| |||||||||||||| || |||||||||||  | |||  ||||||||||| || |    
T  43967483 aaccaaacgagtcgaactatatataactcaagttcaactcatttagttaacgaacttaatctttagctcaagttcggctcgtttggttcatgaaccaaat 43967582  T
Q  188 tcaacaagcaaattattgagtcgagttccgaact 221  Q
    ||||| | | ||||| ||||||||||||||||||    
T  43967583 tcaacgaactaattactgagtcgagttccgaact 43967616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 86 - 162
Target Start/End: Complemental strand, 10749388 - 10749312
Alignment:
Q  86 taaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttc 162  Q
    |||| ||| |||||| |||||||||||||||||||| |||| | ||| || ||||||||||||||||||||||||||    
T  10749388 taaatcaaacgagtcgaactacatatagctcaagttcagctcaattagttgacgaacttaattttcagctcaagttc 10749312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 192
Target Start/End: Original strand, 453450 - 453560
Alignment:
Q  82 ctcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaa 181  Q
    ||||| |||| | |||||| ||||| || ||||||||||| | || ||||| ||||||||||||||||||| ||||||| || | |||  ||||||||||    
T  453450 ctcatgaacctaacgagtcgaactatatgtagctcaagttcaactcatttaattaacgaacttaattttcaactcaagtccagctcgttaggttcatgaa 453549  T
Q  182 ctaagttcaac 192  Q
    | |||||||||    
T  453550 ccaagttcaac 453560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 95 - 247
Target Start/End: Complemental strand, 9412684 - 9412532
Alignment:
Q  95 cgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaa 194  Q
    |||||| || || ||||| ||||| || |||| |||||| ||||||| |||||| ||| |||||||||| | | |  ||||||||||| ||||||||| |    
T  9412684 cgagtcgaattatatataactcaaattcagctcatttatgtaacgaatttaattctcaactcaagttcagctcatttggttcatgaaccaagttcaacga 9412585  T
Q  195 gcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattgc 247  Q
    |   ||| | |||||||| ||| ||||||| |||| |||||||| ||||||||    
T  9412584 gttcattgtcgagtcgagctccaaactataatcgagttggttcggttcattgc 9412532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 162
Target Start/End: Original strand, 34516082 - 34516185
Alignment:
Q  59 atatacatatattgtcaagtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaa 158  Q
    ||||| ||||||  || ||||| ||| | |||||| |||||| |||||||||||| ||||||| |||| | ||| |  ||||||||||||||||||||||    
T  34516082 atatatatatataatcgagtcatctcgtgaaccaaacgagtcgaactacatatagttcaagttcagctcaattaatcgacgaacttaattttcagctcaa 34516181  T
Q  159 gttc 162  Q
    ||||    
T  34516182 gttc 34516185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 88 - 157
Target Start/End: Complemental strand, 33280144 - 33280075
Alignment:
Q  88 aaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctca 157  Q
    |||||| |||||| |||||||||||| ||||||| |||| | ||| || |||||||||||||| ||||||    
T  33280144 aaccaaacgagtctaactacatatagttcaagttcagctcaattagttgacgaacttaattttaagctca 33280075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 189
Target Start/End: Complemental strand, 27189232 - 27189148
Alignment:
Q  105 tacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttc 189  Q
    |||||||| |||||||| | || | ||| || |||||||||||||||||||||||||| || | |  ||||||||||| ||||||    
T  27189232 tacatataactcaagttcaactcaattagttgacgaacttaattttcagctcaagttcgactcatttggttcatgaaccaagttc 27189148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 23181135 - 23181202
Alignment:
Q  95 cgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttc 162  Q
    |||||| |||||||| ||| ||||||| |||| | ||| || ||||||||||||||||| ||||||||    
T  23181135 cgagtcgaactacatctagttcaagttcagctcaattagtttacgaacttaattttcagttcaagttc 23181202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 46)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 79 - 247
Target Start/End: Original strand, 33935477 - 33935645
Alignment:
Q  79 caactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcat 178  Q
    ||||||||  || ||||||||| ||||| ||| |||||||||| | || |||| ||||||||||||||||||||||||||||||| | |||  |||||||    
T  33935477 caactcatggactaaccgagtcgaactatataaagctcaagttcatctcatttgtttaacgaacttaattttcagctcaagttcagctcgtttggttcat 33935576  T
Q  179 gaactaagttcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattgc 247  Q
    |||| ||||||||| ||  |||||| || |||||| || ||||||  |||| |||||||| ||||||||    
T  33935577 gaaccaagttcaacgagttaattatcgaatcgagtcccaaactattgtcgagttggttcgattcattgc 33935645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 79 - 246
Target Start/End: Complemental strand, 44422078 - 44421910
Alignment:
Q  79 caactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaactt-aattttcagctcaagttcaacccgtccggttca 177  Q
    |||||||| ||||||||||||| ||||| ||| |||||||||| |||| |||| |||||||||||| ||||||||||||||||||| | |||  ||||||    
T  44422078 caactcatgaaccaaccgagtcgaactatataaagctcaagttcagctcatttgtttaacgaacttaaattttcagctcaagttcagctcgtttggttca 44421979  T
Q  178 tgaactaagttcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattg 246  Q
    ||||| ||||||||| ||  |||| | || |||||| || ||||||  |||| |||||||| |||||||    
T  44421978 tgaaccaagttcaacgagttaattgtcgaatcgagtcccaaactattgtcgagttggttcggttcattg 44421910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 59 - 238
Target Start/End: Complemental strand, 23227195 - 23227016
Alignment:
Q  59 atatacatatattgtcaagtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaa 158  Q
    ||||| ||||||| || |||||  |||| ||||||||||||||| ||| ||| | ||||||||  ||| |||||||||||||||||||||||||||||||    
T  23227195 atatatatatattatcgagtcagttcatgaaccaaccgagtcaagctatatacaactcaagttcggctcatttatttaacgaacttaattttcagctcaa 23227096  T
Q  159 gttcaacccgtccggttcatgaactaagttcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcg 238  Q
    ||||| | | |  | |||||| || ||||||||||||  |||| | || ||||||| ||||||||  |||| ||||||||    
T  23227095 gttcagctcatttgattcatgtaccaagttcaacaagataattgtcgaatcgagtttcgaactattgtcgagttggttcg 23227016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 59 - 238
Target Start/End: Complemental strand, 23236348 - 23236169
Alignment:
Q  59 atatacatatattgtcaagtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaa 158  Q
    ||||| ||||||| || |||||  |||| ||||||||||||||| ||| ||| | ||||||||  ||| |||||||||||||||||||||||||||||||    
T  23236348 atatatatatattatcgagtcagttcatgaaccaaccgagtcaagctatatacaactcaagttcggctcatttatttaacgaacttaattttcagctcaa 23236249  T
Q  159 gttcaacccgtccggttcatgaactaagttcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcg 238  Q
    ||||| | | |  | |||||| || ||||||||||||  |||| | || ||||||| ||||||||  |||| ||||||||    
T  23236248 gttcagctcatttgattcatgtaccaagttcaacaagataattgtcgaatcgagtttcgaactattgtcgagttggttcg 23236169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 67 - 247
Target Start/End: Complemental strand, 222414 - 222234
Alignment:
Q  67 atattgtcaagtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacc 166  Q
    ||||| || ||| ||||||| ||||||||||||| ||||| ||| |||||||||| |||| |||| ||||||||| ||||||||||| ||||||||| |     
T  222414 atattatcgagttaactcatgaaccaaccgagtcgaactatataaagctcaagttcagctcatttgtttaacgaatttaattttcagttcaagttcagct 222315  T
Q  167 cgtccggttcatgaactaagttcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattgc 247  Q
    |||  ||||||||||| || |||||| ||  |||| | || || ||| || ||||||  |||| |||||||| ||||||||    
T  222314 cgtttggttcatgaaccaaattcaacgagttaattgtcgaatcaagtcccaaactattgtcgagttggttcggttcattgc 222234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 76 - 252
Target Start/End: Complemental strand, 5776309 - 5776133
Alignment:
Q  76 agtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggtt 175  Q
    ||||| ||||| |||| | |||||| ||||| || ||||||||||| |||| ||||| ||||||||||||||||||||||||||| || | |||  ||||    
T  5776309 agtcatctcatgaaccgaacgagtcgaactatatgtagctcaagttcagctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggtt 5776210  T
Q  176 catgaactaagttcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattgctaacc 252  Q
    ||||||| |||||||||     || ||| ||||||| |  ||||||||| |||| |||||||| |||||||| ||||    
T  5776209 catgaaccaagttcaacggattaaatatcgagtcgaatgtcgaactataatcgagttggttcggttcattgccaacc 5776133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 82 - 244
Target Start/End: Original strand, 10618893 - 10619055
Alignment:
Q  82 ctcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaa 181  Q
    ||||| || |||| ||||| ||||| ||| |||||||||| |||| |||||||||||||||||||||||||||||||||||| | | |   |||||||||    
T  10618893 ctcatgaagcaacagagtcgaactatatacagctcaagttcagctcatttatttaacgaacttaattttcagctcaagttcagctcatttagttcatgaa 10618992  T
Q  182 ctaagttcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcat 244  Q
    | ||||||||| ||  |||| | || ||||||||| ||||||  |||| ||| |||| |||||    
T  10618993 ccaagttcaacgagttaattgtcgaatcgagttccaaactattgtcgagttgattcggttcat 10619055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 79 - 247
Target Start/End: Original strand, 22075032 - 22075200
Alignment:
Q  79 caactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcat 178  Q
    ||||| || |||||| |||||| ||||| ||| || ||||||| |||| |||||||||||||||||||||||||||||||||||| | | |  ||||| |    
T  22075032 caactaatgaaccaatcgagtcgaactatatacagatcaagttcagctcatttatttaacgaacttaattttcagctcaagttcagctcatttggttcgt 22075131  T
Q  179 gaactaagttcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattgc 247  Q
    |||| | ||||||| ||  |||| | || ||||||||  ||||||  |||| |||||||| ||||||||    
T  22075132 gaaccacgttcaacgagttaattgtcgaatcgagttctaaactattatcgagttggttcggttcattgc 22075200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 95 - 247
Target Start/End: Original strand, 45055713 - 45055865
Alignment:
Q  95 cgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaa 194  Q
    |||||| ||||| ||||| |||||||| | || ||||| |||||||||||||| || |||||||||||  | |||  ||||||||||| ||||||||| |    
T  45055713 cgagtcgaactatatataactcaagttcaactcatttagttaacgaacttaatctttagctcaagttcggctcgtttggttcatgaaccaagttcaacga 45055812  T
Q  195 gcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattgc 247  Q
     | |||||  ||||||||||||||||| ||||||| |||  ||| ||||||||    
T  45055813 actaattaccgagtcgagttccgaactttattcgagttgtatcggttcattgc 45055865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 96 - 192
Target Start/End: Original strand, 37334264 - 37334360
Alignment:
Q  96 gagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaac 192  Q
    ||||| ||||| || ||||||||||| |||| ||||| ||||||||||||||||||||||||||| || | |||  ||||||||||| |||||||||    
T  37334264 gagtcgaactatatgtagctcaagttcagctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaaccaagttcaac 37334360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 76 - 192
Target Start/End: Original strand, 42072049 - 42072165
Alignment:
Q  76 agtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggtt 175  Q
    ||||| ||||| |||| | |||||| ||||| || ||||||||||| |||| ||||| ||||||||||||||||||||||||||| || | |||  ||||    
T  42072049 agtcatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggtt 42072148  T
Q  176 catgaactaagttcaac 192  Q
    ||||||  |||||||||    
T  42072149 catgaatcaagttcaac 42072165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 102 - 192
Target Start/End: Complemental strand, 5795089 - 5794999
Alignment:
Q  102 aactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaac 192  Q
    ||||| || ||||||||||| |||| ||||| ||||||||||||||||||||||||||| || | |||  ||||||||||| |||||||||    
T  5795089 aactatatgtagctcaagttcagctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaaccaagttcaac 5794999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 88 - 246
Target Start/End: Complemental strand, 11595963 - 11595805
Alignment:
Q  88 aaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagt 187  Q
    |||||| | |||| ||||| ||||| |||||| | | || ||||| |||||||||||||| || |||||||||||  | |||  ||||||||||| ||||    
T  11595963 aaccaaacaagtcgaactatatataactcaaggtcaactcatttagttaacgaacttaatctttagctcaagttcggctcgtttggttcatgaaccaagt 11595864  T
Q  188 tcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattg 246  Q
    ||||| | | |||||  ||||||||||||||||| ||||||| |||  ||| |||||||    
T  11595863 tcaacgaactaattaccgagtcgagttccgaactttattcgagttgtatcggttcattg 11595805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 109 - 246
Target Start/End: Original strand, 7447875 - 7448012
Alignment:
Q  109 tatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagcaaattattgagt 208  Q
    ||||| ||||||| | || ||||| |||||||||||||||||||||||||||||  | | |  ||||||||||| ||||||||  | | |||| | ||||    
T  7447875 tatagttcaagttcaactcatttaattaacgaacttaattttcagctcaagttcggctcatttggttcatgaaccaagttcaatgaaccaattgtcgagt 7447974  T
Q  209 cgagttccgaactatattcgatttggttcgcttcattg 246  Q
    ||| ||  ||||||||||||| |||||||| |||||||    
T  7447975 cgaattatgaactatattcgagttggttcggttcattg 7448012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 95 - 184
Target Start/End: Original strand, 15434228 - 15434317
Alignment:
Q  95 cgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaacta 184  Q
    |||||| ||||| || ||||||||||| |||| ||||| ||||||||||||||||||||||||||| || | |||  |||||||||||||    
T  15434228 cgagtcgaactagatgtagctcaagttcagctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaacta 15434317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 82 - 163
Target Start/End: Complemental strand, 33171707 - 33171626
Alignment:
Q  82 ctcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttca 163  Q
    ||||| ||||||||||||||||||| ||| | ||||||||  ||| |||||||||| |||||||||||| ||||||||||||    
T  33171707 ctcatgaaccaaccgagtcaaactatatacaactcaagttcggctcatttatttaatgaacttaatttttagctcaagttca 33171626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 95 - 192
Target Start/End: Original strand, 36926984 - 36927081
Alignment:
Q  95 cgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaac 192  Q
    |||||| ||||| || ||||||||||| | || ||||| ||||||||||||||||| ||||||||| |||| |||  ||||||||||| |||||||||    
T  36926984 cgagtcgaactatatgtagctcaagttcaactcatttaattaacgaacttaatttttagctcaagtccaactcgttaggttcatgaaccaagttcaac 36927081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 59 - 192
Target Start/End: Original strand, 45176194 - 45176327
Alignment:
Q  59 atatacatatattgtcaagtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaa 158  Q
    ||||| ||||||  || ||||| ||||| |||| | |||||| || || || ||||||||||| | || ||||| |||||||||||||||||||||| ||    
T  45176194 atatatatatataatcgagtcatctcatgaacctaacgagtcgaattatatgtagctcaagttcaactcatttaattaacgaacttaattttcagctaaa 45176293  T
Q  159 gttcaacccgtccggttcatgaactaagttcaac 192  Q
    ||||| | |||  ||||||||||| |||||||||    
T  45176294 gttcagctcgtttggttcatgaaccaagttcaac 45176327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 95 - 192
Target Start/End: Complemental strand, 48505948 - 48505851
Alignment:
Q  95 cgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaac 192  Q
    |||||| ||||| || ||||||||||| |||| ||||| ||||||||||||||||||||||||||| || | | |  ||||||||||| |||||||||    
T  48505948 cgagtcgaactatatgtagctcaagttcagctcatttaattaacgaacttaattttcagctcaagtccagctcattaggttcatgaaccaagttcaac 48505851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 81 - 161
Target Start/End: Complemental strand, 2466691 - 2466611
Alignment:
Q  81 actcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagtt 161  Q
    |||||| |||||| |||||| || ||||||||| | ||||| |||| |||||||||||||||| |||||||||||||||||    
T  2466691 actcatgaaccaatcgagtcgaattacatatagtttaagtttagctcatttatttaacgaactaaattttcagctcaagtt 2466611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 123 - 247
Target Start/End: Original strand, 33124708 - 33124832
Alignment:
Q  123 agcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagcaaattattgagtcgagttccgaacta 222  Q
    |||| |||||||||||||||||||||||||||||||||||||  | |  ||||||| ||| ||||||||| ||  |||| | || ||||||| | |||||    
T  33124708 agctcatttatttaacgaacttaattttcagctcaagttcaattcatttggttcataaaccaagttcaacgagttaattgtcgaatcgagtttcaaacta 33124807  T
Q  223 tattcgatttggttcgcttcattgc 247  Q
    |  |||| |||||||| ||||||||    
T  33124808 ttgtcgagttggttcggttcattgc 33124832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 49 - 192
Target Start/End: Original strand, 48634385 - 48634529
Alignment:
Q  49 atacacacacatatacatatat-tgtcaagtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaat 147  Q
    |||| ||||||||||||||||| | || ||  ||||||| || |||||||||| ||||| ||  | ||||| |  | || ||||||||||||||||||||    
T  48634385 atacgcacacatatacatatatgtatcgagctaactcatgaatcaaccgagtcgaactatattcaactcaattctaactcatttatttaacgaacttaat 48634484  T
Q  148 tttcagctcaagttcaacccgtccggttcatgaactaagttcaac 192  Q
    ||| |||||||||||||| | |  ||||||||||| |||||||||    
T  48634485 ttttagctcaagttcaactcatttggttcatgaaccaagttcaac 48634529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 115 - 246
Target Start/End: Original strand, 26719820 - 26719951
Alignment:
Q  115 tcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagcaaattattgagtcgagtt 214  Q
    ||||||| | || ||||||||||||||||||||||||| ||||||||| || | |  ||||||||||| |||| |||  | | |||||| || ||||||     
T  26719820 tcaagttcaactcatttatttaacgaacttaattttcaactcaagttcgactcatttggttcatgaaccaagtccaatgaaccaattatcgaatcgagta 26719919  T
Q  215 ccgaactatattcgatttggttcgcttcattg 246  Q
     |||||||| ||||| |||||||| |||||||    
T  26719920 tcgaactattttcgagttggttcgattcattg 26719951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 192
Target Start/End: Complemental strand, 3930869 - 3930779
Alignment:
Q  102 aactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaac 192  Q
    ||||| || ||||||||||| |||| ||||| ||||||||||||||||||||||||||| || | |||  |||||||| || |||||||||    
T  3930869 aactatatgtagctcaagttcagctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatggaccaagttcaac 3930779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 192
Target Start/End: Original strand, 26216244 - 26216354
Alignment:
Q  82 ctcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaa 181  Q
    ||||| |||| | |||||| ||||| || ||||||||||| ||||  |||| ||||||||||||||||||||||||||| || | |||  ||||||| ||    
T  26216244 ctcatgaacctaacgagtcgaactatatgtagctcaagttcagctcctttaattaacgaacttaattttcagctcaagtccagctcgttaggttcataaa 26216343  T
Q  182 ctaagttcaac 192  Q
    | |||||||||    
T  26216344 ccaagttcaac 26216354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 229
Target Start/End: Complemental strand, 40480218 - 40480076
Alignment:
Q  88 aaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccg-tccggttcatgaactaag 186  Q
    |||||| |||||| ||||| ||||| |||||||| | || ||||| |||||||||||||| || |||||||||||  | || |  ||||||||||| |||    
T  40480218 aaccaaacgagtcgaactatatataactcaagttcaactcatttagttaacgaacttaatctttagctcaagttcggctcgttttggttcatgaaccaag 40480119  T
Q  187 ttcaacaagcaaattattgagtcgagttccgaactatattcga 229  Q
    |||||| | | |||||  || |||||||||||||| |||||||    
T  40480118 ttcaacgaactaattaccgactcgagttccgaactttattcga 40480076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 83 - 157
Target Start/End: Original strand, 41449724 - 41449798
Alignment:
Q  83 tcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctca 157  Q
    |||| ||||||||||||||||| | ||| | |||||||| |||| |||||||||||||| |||||||||||||||    
T  41449724 tcatgaaccaaccgagtcaaacgatatacaactcaagttcagctaatttatttaacgaatttaattttcagctca 41449798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 59 - 160
Target Start/End: Original strand, 3942125 - 3942226
Alignment:
Q  59 atatacatatattgtcaagtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaa 158  Q
    ||||| ||||||  || ||||| ||| | |||||| |||| | |||||||||||||||||||| |||| | ||| || ||||||||||||||||||||||    
T  3942125 atatatatatataatcgagtcatctcgtgaaccaaacgagccgaactacatatagctcaagttcagctcaattaattcacgaacttaattttcagctcaa 3942224  T
Q  159 gt 160  Q
    ||    
T  3942225 gt 3942226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 95 - 192
Target Start/End: Complemental strand, 28949918 - 28949821
Alignment:
Q  95 cgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaac 192  Q
    |||||| ||||| || ||||||||||| |||| ||||| ||||||||||||||||| ||||||| | || | |||  ||||||||||| |||||||||    
T  28949918 cgagtcgaactatatgtagctcaagttcagctcatttaattaacgaacttaatttttagctcaattccagctcgttaggttcatgaaccaagttcaac 28949821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 95 - 252
Target Start/End: Original strand, 43052857 - 43053014
Alignment:
Q  95 cgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaa 194  Q
    |||||| ||||| || ||||||||||| |||| || || |||||||||||||||||| |||||||| || | | |  ||||||||||| |||||||||      
T  43052857 cgagtcgaactatatgtagctcaagttcagctcatctaattaacgaacttaattttcggctcaagtccagctcattaggttcatgaaccaagttcaacgg 43052956  T
Q  195 gcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattgctaacc 252  Q
       || ||| ||||||| |  ||||||||| |||| |||||||| |||||||| ||||    
T  43052957 attaaatatcgagtcgaatgtcgaactataatcgagttggttcggttcattgccaacc 43053014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 246
Target Start/End: Original strand, 20400965 - 20401132
Alignment:
Q  79 caactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcat 178  Q
    |||||||| |||||| |||||| ||||| || || |||||||| |||| ||||| |||| ||||||||| || ||||||||||||   |    |||||||    
T  20400965 caactcattaaccaaacgagtcgaactatatgtaactcaagttcagctcatttaattaaagaacttaatatttagctcaagttcagttcagtaggttcat 20401064  T
Q  179 gaactaagttcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattg 246  Q
    |||| || |||||    | |||||  ||||||| || |||||||||||||| |||||||| |||||||    
T  20401065 gaaccaaattcaatggactaattaccgagtcgaatttcgaactatattcgagttggttcggttcattg 20401132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 162
Target Start/End: Complemental strand, 27231735 - 27231632
Alignment:
Q  59 atatacatatattgtcaagtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaa 158  Q
    ||||| ||||||  || ||||| ||||| |||||| ||||||||||||||||||||| |||||  | | | ||| || ||||||||||||||||| ||||    
T  27231735 atatatatatataatcgagtcatctcatgaaccaaacgagtcaaactacatatagcttaagttcggttcaattagttgacgaacttaattttcagttcaa 27231636  T
Q  159 gttc 162  Q
    ||||    
T  27231635 gttc 27231632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 59 - 161
Target Start/End: Complemental strand, 37401762 - 37401660
Alignment:
Q  59 atatacatatattgtcaagtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaa 158  Q
    ||||| ||||||| || ||||| ||| | || ||| |||||| ||||||||||||||||| || |||| | ||| || |||||||||||||||| |||||    
T  37401762 atatatatatattatcgagtcatctcgtgaatcaaacgagtccaactacatatagctcaacttcagctcaattagttgacgaacttaattttcaactcaa 37401663  T
Q  159 gtt 161  Q
    |||    
T  37401662 gtt 37401660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 247
Target Start/End: Complemental strand, 666020 - 665855
Alignment:
Q  82 ctcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaa 181  Q
    ||||| |||| | |||||| | ||| || |||||||| || |||| ||||| ||||||||||||||||||||||||||| || | |||  ||||||||||    
T  666020 ctcatgaacctaacgagtcgagctatatgtagctcaaattcagctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaa 665921  T
Q  182 ctaagttcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattgc 247  Q
    | || || |||     || ||| ||||||| |  ||||||||| |||| |||||||| ||||||||    
T  665920 ccaaatttaacggattaaatatcgagtcgaatgtcgaactataatcgagttggttcggttcattgc 665855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 245
Target Start/End: Complemental strand, 21760726 - 21760593
Alignment:
Q  112 agctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagcaaattattgagtcga 211  Q
    |||||||||| | || |||||||||||||  ||| |||||| ||||||||| || | |  ||||| ||||| ||||||||| |   |||||| || ||||    
T  21760726 agctcaagttcaactcatttatttaacgagtttagttttcaactcaagttcgactcatttggttcgtgaacaaagttcaacgaatcaattatcgaatcga 21760627  T
Q  212 gttccgaactatattcgatttggttcgcttcatt 245  Q
    ||| |||||||| ||||| |||||||| ||||||    
T  21760626 gtttcgaactattttcgagttggttcggttcatt 21760593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 115 - 247
Target Start/End: Complemental strand, 18250133 - 18250001
Alignment:
Q  115 tcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagcaaattattgagtcgagtt 214  Q
    ||||||| | || ||||||||||||| | ||||||||| ||||||||| || | |  ||||||||||| ||||||||| |   |||||| || ||||||     
T  18250133 tcaagttcaactcatttatttaacgagcataattttcaactcaagttcgactcatttggttcatgaaccaagttcaacgaatcaattatcgaatcgagtc 18250034  T
Q  215 ccgaactatattcgatttggttcgcttcattgc 247  Q
      ||||||| ||||| |||||||| ||||||||    
T  18250033 ttgaactattttcgagttggttcggttcattgc 18250001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 59 - 162
Target Start/End: Original strand, 17608661 - 17608764
Alignment:
Q  59 atatacatatattgtcaagtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaa 158  Q
    ||||| ||||||  |||||||| ||| | |||||||| |||  |||||||||||| ||||||| | || | ||| || ||||||||||||||||| ||||    
T  17608661 atatatatatataatcaagtcatctcgtgaaccaaccaagttgaactacatatagatcaagttcaactcaattagttgacgaacttaattttcagatcaa 17608760  T
Q  159 gttc 162  Q
    ||||    
T  17608761 gttc 17608764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 108 - 166
Target Start/End: Original strand, 29527384 - 29527442
Alignment:
Q  108 atatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacc 166  Q
    |||||| ||||||| |||| ||||| |||||||||||||||| ||||| ||||||||||    
T  29527384 atatagttcaagtttagctcatttaattaacgaacttaatttacagctgaagttcaacc 29527442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 163
Target Start/End: Complemental strand, 37101240 - 37101190
Alignment:
Q  113 gctcaagttgagcttatttatttaacgaacttaattttcagctcaagttca 163  Q
    ||||||||| | |||||||||||||| ||||||||||||| ||||||||||    
T  37101240 gctcaagttaaacttatttatttaacaaacttaattttcaactcaagttca 37101190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 115 - 192
Target Start/End: Original strand, 36472444 - 36472521
Alignment:
Q  115 tcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaac 192  Q
    ||||||| | |||||||||||||||| ||||||||||| |||||||||  | | |  ||||||||||| |||||||||    
T  36472444 tcaagttcaacttatttatttaacgagcttaattttcaactcaagttcggctcatttggttcatgaaccaagttcaac 36472521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 128 - 247
Target Start/End: Complemental strand, 18740345 - 18740226
Alignment:
Q  128 atttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagcaaattattgagtcgagttccgaactatattc 227  Q
    ||||||||||||| ||||||||||| ||||||||| || | |  ||||||||||| ||||| ||  ||  ||||||  | |||| |  |||||||| |||    
T  18740345 atttatttaacgagcttaattttcaactcaagttcgactcatttggttcatgaaccaagtttaatgagtcaattatcaaatcgaatctcgaactattttc 18740246  T
Q  228 gatttggttcgcttcattgc 247  Q
    || |||||||| ||||||||    
T  18740245 gagttggttcggttcattgc 18740226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 128 - 247
Target Start/End: Complemental strand, 46573739 - 46573620
Alignment:
Q  128 atttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagcaaattattgagtcgagttccgaactatattc 227  Q
    ||||||||||||| ||||||||||| || |||||| || | |  ||||||||||| ||||||||| ||  |||||| || |||| |  |||| ||| ||     
T  46573739 atttatttaacgagcttaattttcaacttaagttcgactcatttggttcatgaaccaagttcaacgagtcaattatcgaatcgaatctcgaattattttt 46573640  T
Q  228 gatttggttcgcttcattgc 247  Q
    || |||||||| ||||||||    
T  46573639 gagttggttcggttcattgc 46573620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 246
Target Start/End: Complemental strand, 17025488 - 17025370
Alignment:
Q  128 atttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagcaaattattgagtcgagttccgaactatattc 227  Q
    ||||||||||||| ||||||||||| ||||||||| || | |  ||||| ||||| ||||||||| ||  |||||| || ||||     ||||||| |||    
T  17025488 atttatttaacgagcttaattttcaactcaagttcgactcatttggttcgtgaaccaagttcaacgagtcaattatcgaatcgaaccttgaactattttc 17025389  T
Q  228 gatttggttcgcttcattg 246  Q
    || |||||||| |||||||    
T  17025388 gagttggttcggttcattg 17025370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 229
Target Start/End: Original strand, 10096478 - 10096590
Alignment:
Q  117 aagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagcaaattattgagtcgagttcc 216  Q
    ||||| |||| ||||| ||| ||||||||||||   | ||||||||||| | |  ||||||||||| |||||| |  | |||||| | |||||||||| |    
T  10096478 aagttcagctcatttagttagcgaacttaatttctcgttcaagttcaactcatttggttcatgaaccaagttcgatgaacaaattgtcgagtcgagtttc 10096577  T
Q  217 gaactatattcga 229  Q
    ||||||| |||||    
T  10096578 gaactatgttcga 10096590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 49001113 - 49001077
Alignment:
Q  128 atttatttaacgaacttaattttcagctcaagttcaa 164  Q
    ||||| |||||||||||||||||||| ||||||||||    
T  49001113 atttagttaacgaacttaattttcagttcaagttcaa 49001077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 49034351 - 49034287
Alignment:
Q  128 atttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaac 192  Q
    |||||||| |||| ||||||||||| ||||||||| || | |  ||||||||||| |||||||||    
T  49034351 atttatttgacgagcttaattttcaactcaagttcgactcatttggttcatgaaccaagttcaac 49034287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 7e-28; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 76 - 247
Target Start/End: Original strand, 27634632 - 27634803
Alignment:
Q  76 agtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggtt 175  Q
    ||||| ||||| |||| | |||||||||||| || ||||||||||| |||| ||||| ||||||||||||||||||||||||||| || | |||  ||||    
T  27634632 agtcatctcatgaacctaacgagtcaaactatatgtagctcaagttcagctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggtt 27634731  T
Q  176 catgaactaagttcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattgc 247  Q
    |||||||||||||||||     || ||| ||||||| |  ||||||||| |||| |||||||| ||||||||    
T  27634732 catgaactaagttcaacggattaaatatcgagtcgaatgtcgaactataatcgagttggttcggttcattgc 27634803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 76 - 247
Target Start/End: Complemental strand, 44740661 - 44740491
Alignment:
Q  76 agtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggtt 175  Q
    ||||||||||| ||||| ||||||| ||||| ||| |||||||||| |||| |||| |||||||||||||||||| |||||||||||| | |||  ||||    
T  44740661 agtcaactcatgaacca-ccgagtcgaactatataaagctcaagttcagctcatttgtttaacgaacttaatttttagctcaagttcagctcgtttggtt 44740563  T
Q  176 catgaactaagttcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattgc 247  Q
    ||||||| ||||||||| ||  |||| | || |||||| || ||||||  |||| |||||||| ||||||||    
T  44740562 catgaaccaagttcaacgagttaattgtcgaatcgagtcccaaactattgtcgagttggttcggttcattgc 44740491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 76 - 247
Target Start/End: Complemental strand, 3409367 - 3409196
Alignment:
Q  76 agtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggtt 175  Q
    ||||| ||||| || ||| |||||| ||||| ||| ||||||| || |||| ||||||||||||||||||||||||||||||||||||   | |  ||||    
T  3409367 agtcagctcatgaatcaatcgagtcgaactatatacagctcaaattcagctcatttatttaacgaacttaattttcagctcaagttcagttcatttggtt 3409268  T
Q  176 catgaactaagttcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattgc 247  Q
    ||||||| ||||||||| ||  |||| | || ||||||| ||||||||  |||| |||||||| ||||||||    
T  3409267 catgaaccaagttcaacgagttaattgtcgaatcgagtttcgaactattgtcgagttggttcggttcattgc 3409196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 76 - 192
Target Start/End: Original strand, 36538617 - 36538733
Alignment:
Q  76 agtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggtt 175  Q
    ||||| ||||| |||| | |||||| ||||| || ||||||||||| |||| ||||| ||||||||||||||||||||||||||| |||| |||  ||||    
T  36538617 agtcatctcatgaacctaacgagtcgaactatatgtagctcaagtttagctcatttaattaacgaacttaattttcagctcaagtccaactcgttaggtt 36538716  T
Q  176 catgaactaagttcaac 192  Q
    ||||||| |||||||||    
T  36538717 catgaaccaagttcaac 36538733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 88 - 247
Target Start/End: Complemental strand, 2647141 - 2646982
Alignment:
Q  88 aaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagt 187  Q
    |||||| |||||| ||||| ||||| |||||||| | |||||||| ||||||||||||||||| |||||||||||  | |||  ||||||||||| ||||    
T  2647141 aaccaaacgagtcgaactatatataactcaagttcaacttatttagttaacgaacttaatttttagctcaagttcggctcgtttggttcatgaaccaagt 2647042  T
Q  188 tcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattgc 247  Q
    ||||| | | |||||  ||||||||||| ||||| |||| || |||  ||| ||||||||    
T  2647041 tcaacgaactaattaccgagtcgagttctgaactttatttgagttgtatcggttcattgc 2646982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 88 - 247
Target Start/End: Complemental strand, 34116340 - 34116181
Alignment:
Q  88 aaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagt 187  Q
    |||||| |||||| |||||||||||||||||||| |||| | ||||||| ||||||||||||| |||||||||||  | | |  ||||||||||||||||    
T  34116340 aaccaaacgagtcgaactacatatagctcaagttcagctcaattatttagcgaacttaattttaagctcaagttcggctcatttggttcatgaactaagt 34116241  T
Q  188 tcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattgc 247  Q
    || ||||   ||||||| | |||| || |||||| || |||| ||||||||  |||||||    
T  34116240 tcgacaaatcaattattaaatcgaattacgaactctaatcgagttggttcggctcattgc 34116181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 82 - 192
Target Start/End: Original strand, 34064672 - 34064782
Alignment:
Q  82 ctcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaa 181  Q
    ||||| |||| | |||||| ||||| || ||||||||||| |||| ||||| ||||||||||||||||||||||||||| || | |||  ||||||||||    
T  34064672 ctcatgaacctaacgagtcgaactatatgtagctcaagttcagctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaa 34064771  T
Q  182 ctaagttcaac 192  Q
    |||||||||||    
T  34064772 ctaagttcaac 34064782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 83 - 246
Target Start/End: Original strand, 40458889 - 40459052
Alignment:
Q  83 tcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaac 182  Q
    |||| |||||| |||||| ||||| |  ||| ||||||| |||| ||||||||||||| ||||||||||| ||||||||| || | |  ||||| |||||    
T  40458889 tcatgaaccaaacgagtcgaactatacttagttcaagttcagctcatttatttaacgagcttaattttcaactcaagttcgactcatttggttcgtgaac 40458988  T
Q  183 taagttcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattg 246  Q
     ||||||||||| | ||||||||| ||||||  | |||||| ||| | |||||||| |||||||    
T  40458989 caagttcaacaaaccaattattgaatcgagtatcaaactattttcaagttggttcggttcattg 40459052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 128 - 255
Target Start/End: Original strand, 41332244 - 41332371
Alignment:
Q  128 atttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagcaaattattgagtcgagttccgaactatattc 227  Q
    ||||||||||| ||||||||||||||||||| |||||| |    |||| |||||| ||||||||||||  |||| | || ||||||| ||||||||||||    
T  41332244 atttatttaacaaacttaattttcagctcaaattcaactcaattggtttatgaaccaagttcaacaagttaattgtcgaatcgagtttcgaactatattc 41332343  T
Q  228 gatttggttcgcttcattgctaacctta 255  Q
    || |||||| | |||||||| |||||||    
T  41332344 gagttggtttggttcattgccaacctta 41332371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 82 - 192
Target Start/End: Original strand, 26436321 - 26436431
Alignment:
Q  82 ctcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaa 181  Q
    ||||| |||| | |||||| ||||| || ||||||||||| |||| ||||| |||||||||||||||||||||||| ||||| | |||  ||||||||||    
T  26436321 ctcatgaacctaacgagtcgaactatatgtagctcaagttcagctcatttaattaacgaacttaattttcagctcacgttcagctcgttaggttcatgaa 26436420  T
Q  182 ctaagttcaac 192  Q
    | |||||||||    
T  26436421 ccaagttcaac 26436431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 82 - 192
Target Start/End: Original strand, 33831462 - 33831572
Alignment:
Q  82 ctcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaa 181  Q
    ||||| |||| | |||||| ||||| || ||||||||||| |||| ||||| ||||||||||||||||||||||||||| || | |||  ||||||||||    
T  33831462 ctcatgaacctaacgagtcgaactatatgtagctcaagttcagctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaa 33831561  T
Q  182 ctaagttcaac 192  Q
    | || ||||||    
T  33831562 ccaaattcaac 33831572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 59 - 161
Target Start/End: Original strand, 39690114 - 39690216
Alignment:
Q  59 atatacatatattgtcaagtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaa 158  Q
    ||||| ||||||  || ||||| ||||| |||||| |||||| |||||||||||||||||||| | || | ||| || ||||||||||||||||||||||    
T  39690114 atatatatatataatcgagtcatctcatgaaccaaacgagtcgaactacatatagctcaagttcaactcaattagttgacgaacttaattttcagctcaa 39690213  T
Q  159 gtt 161  Q
    |||    
T  39690214 gtt 39690216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 88 - 249
Target Start/End: Original strand, 18667724 - 18667885
Alignment:
Q  88 aaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagt 187  Q
    |||||| |||||| ||||| ||||| |||||||| | ||||||||||||||||| ||||  || ||||||| ||   | |||  ||||||||||| ||||    
T  18667724 aaccaaacgagtcgaactatatataactcaagttcaacttatttatttaacgaaattaagctttagctcaaattatgctcgtttggttcatgaaccaagt 18667823  T
Q  188 tcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattgcta 249  Q
    |||| ||   |||||  ||||||||||||||||| |||| || |||  ||| ||||||||||    
T  18667824 tcaataaaataattaccgagtcgagttccgaactttatttgagttgtatcggttcattgcta 18667885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 60 - 157
Target Start/End: Original strand, 40680166 - 40680263
Alignment:
Q  60 tatacatatattgtcaagtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctca 157  Q
    |||| ||||||| || ||||| || || |||||| |||||| ||||| ||||| ||||| || |||| ||||||||||||||| ||||||||||||||    
T  40680166 tatatatatattatcgagtcagcttatgaaccaatcgagtcgaactatatataactcaaattcagctcatttatttaacgaacataattttcagctca 40680263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 153
Target Start/End: Original strand, 44935705 - 44935805
Alignment:
Q  51 acacacacatatacatatattgtcaagtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaatttt 150  Q
    ||||||||||||||||||| |  |||||||||| || |||||| |||||||||||| |||||  | ||||| |||| ||||| ||||||||| | |||||    
T  44935705 acacacacatatacatataat--caagtcaacttatgaaccaaacgagtcaaactatatataatttaagttcagctcatttagttaacgaacatgatttt 44935802  T
Q  151 cag 153  Q
    |||    
T  44935803 cag 44935805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 88 - 162
Target Start/End: Original strand, 11027881 - 11027955
Alignment:
Q  88 aaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttc 162  Q
    |||||| |||||| |||||||||||||||||||| |||| | ||| || |||||||||||||| || ||||||||    
T  11027881 aaccaaacgagtcgaactacatatagctcaagttcagctcaattagttgacgaacttaatttttagttcaagttc 11027955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 82 - 192
Target Start/End: Original strand, 41959110 - 41959220
Alignment:
Q  82 ctcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaa 181  Q
    ||||| |||| | |||||| ||||| || ||||| | ||| |||| ||||| ||||||||||||||||||||||||||| || | |||  ||||||||||    
T  41959110 ctcattaacctaacgagtcgaactatatgtagcttatgttcagctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaa 41959209  T
Q  182 ctaagttcaac 192  Q
      |||||||||    
T  41959210 tcaagttcaac 41959220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 163
Target Start/End: Original strand, 2578046 - 2578127
Alignment:
Q  82 ctcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttca 163  Q
    ||||| || |||||||||| | | | |||||||| ||||| | || |||||||||||||| |||||||||||||||||||||    
T  2578046 ctcatgaatcaaccgagtcgatcgatatatagcttaagtttaactcatttatttaacgaatttaattttcagctcaagttca 2578127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 238
Target Start/End: Complemental strand, 24844804 - 24844683
Alignment:
Q  117 aagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagcaaattattgagtcgagttcc 216  Q
    ||||| |||| ||||||||| |||| ||||||||||||||||||||| | | |  ||||||||||| ||||||||| ||  ||||   || ||||||| |    
T  24844804 aagttcagctcatttatttatcgaatttaattttcagctcaagttcagctcatttggttcatgaaccaagttcaacgagataattgccgaatcgagtttc 24844705  T
Q  217 gaactatattcgatttggttcg 238  Q
    |||||||  |||| ||||||||    
T  24844704 gaactattatcgagttggttcg 24844683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 64 - 192
Target Start/End: Original strand, 9963708 - 9963836
Alignment:
Q  64 catatattgtcaagtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttca 163  Q
    |||||||| || ||| | ||||| |||||| ||||||| |||| ||| | |||||||| |||| |||||| |||||||||||||||| | || |||||||    
T  9963708 catatattatcgagttagctcatgaaccaatcgagtcagactatatacaactcaagttcagctcatttatctaacgaacttaatttttaacttaagttca 9963807  T
Q  164 acccgtccggttcatgaactaagttcaac 192  Q
     | | |  |||||||||||  ||||||||    
T  9963808 gctcatttggttcatgaacccagttcaac 9963836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 33164107 - 33164043
Alignment:
Q  128 atttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaac 192  Q
    ||||| ||||||||||||||||||||||||||| || | |||  ||||||||||| |||||||||    
T  33164107 atttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaaccaagttcaac 33164043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 151
Target Start/End: Complemental strand, 2908775 - 2908700
Alignment:
Q  76 agtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttc 151  Q
    ||||||||||| ||||||| ||||| || ||||||||| ||||||| | || |||||||||| |||||| ||||||    
T  2908775 agtcaactcatcaaccaactgagtcgaattacatatagttcaagttcaactcatttatttaaggaacttgattttc 2908700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 246
Target Start/End: Complemental strand, 17369116 - 17368999
Alignment:
Q  128 atttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagcaaattattgagtcgagttccgaactatattc 227  Q
    ||||| ||||| || |||||||||| ||||||||| || | |  ||||||| |||||| |||||| ||  |||| | |||| ||||||||||||||||||    
T  17369116 atttacttaacaaatttaattttcaactcaagttcgactcatt-ggttcataaactaaattcaacgagttaattgtcgagttgagttccgaactatattc 17369018  T
Q  228 gatttggttcgcttcattg 246  Q
    || |||| ||| |||||||    
T  17369017 gagttggctcggttcattg 17368999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 86 - 247
Target Start/End: Original strand, 30713127 - 30713288
Alignment:
Q  86 taaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaa 185  Q
    |||||||| |||||| |||| ||||||||||||||| | || | ||| || |||||||||| |||||||||| ||||  | | |  ||||||||||| ||    
T  30713127 taaaccaaacgagtcgaactgcatatagctcaagttcaactcaattagttgacgaacttaaatttcagctcatgttcggctcatttggttcatgaaccaa 30713226  T
Q  186 gttcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattgc 247  Q
    |||| || |   |||||| || |||| || |||||  || |||| |||||||| ||||||||    
T  30713227 gttcgacgaatcaattatcgaatcgaattacgaacactaatcgagttggttcggttcattgc 30713288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 162
Target Start/End: Complemental strand, 27902605 - 27902532
Alignment:
Q  88 aaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttc 162  Q
    |||||| |||||| |||||||||||||||||||| | || | ||| || ||| | ||||||||||||||||||||    
T  27902605 aaccaaacgagtcgaactacatatagctcaagttcaactcaattagttgacg-atttaattttcagctcaagttc 27902532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 192
Target Start/End: Complemental strand, 11007112 - 11007035
Alignment:
Q  115 tcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaac 192  Q
    ||||||| | || ||||||||||||| ||||||||||| ||||||||| || | |  ||||| ||||| |||||||||    
T  11007112 tcaagttcaactcatttatttaacgagcttaattttcaactcaagttcgactcatttggttcgtgaaccaagttcaac 11007035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 246
Target Start/End: Complemental strand, 27464698 - 27464581
Alignment:
Q  129 tttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagcaaattattgagtcgagttccgaactatattcg 228  Q
    ||||||||  ||||||||||||||  |||||||| || | |  ||||||||||| || ||||||||   |||||| || || |||  |||||||| ||||    
T  27464698 tttatttagggaacttaattttcaattcaagttcgactcatttggttcatgaaccaaattcaacaaatcaattatcgaatcaagtctcgaactattttcg 27464599  T
Q  229 atttggttcgcttcattg 246  Q
    | |||||||| |||||||    
T  27464598 agttggttcggttcattg 27464581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 41)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 59 - 161
Target Start/End: Original strand, 3577614 - 3577716
Alignment:
Q  59 atatacatatattgtcaagtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaa 158  Q
    ||||| ||||||| || |||| |||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||| | | ||||||||||||    
T  3577614 atatatatatattatcgagtctactcataaaccaaccgagtcgaactacatatagctcaagttcagctcatttatttaacgaattaatttttcagctcaa 3577713  T
Q  159 gtt 161  Q
    |||    
T  3577714 gtt 3577716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 65 - 249
Target Start/End: Complemental strand, 23915787 - 23915603
Alignment:
Q  65 atatattgtcaagtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaa 164  Q
    ||||||| || || |||||||| |||||| |||||| ||||| ||| | |||||||| | || |||||||||| ||||||||||||||||| |||||||     
T  23915787 atatattatcgagccaactcattaaccaatcgagtcgaactatatacaactcaagttcaactcatttatttaatgaacttaattttcagctaaagttcag 23915688  T
Q  165 cccgtccggttcatgaactaagttcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattgcta 249  Q
    | | |  ||||||||||| ||||||||| ||  |||| |||| ||||||| |||||| |  |||| |||||||| ||||||||||    
T  23915687 ctcatttggttcatgaaccaagttcaacgagataattgttgaatcgagtttcgaacttttgtcgagttggttcgattcattgcta 23915603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 76 - 247
Target Start/End: Original strand, 15306454 - 15306625
Alignment:
Q  76 agtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggtt 175  Q
    ||||| ||||| |||||| |||||| ||||| ||| ||||||||||  ||| |||||||||| ||||||||||||| ||||||||||| | | |  ||||    
T  15306454 agtcagctcatgaaccaatcgagtcgaactatatacagctcaagttcggctcatttatttaatgaacttaattttccgctcaagttcagctcatttggtt 15306553  T
Q  176 catgaactaagttcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattgc 247  Q
    ||||||| ||||||||  |   |||||| || ||||||||||||||||  || | |||||||| ||||||||    
T  15306554 catgaaccaagttcaatgaattaattatcgaatcgagttccgaactattgtcaagttggttcggttcattgc 15306625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 82 - 247
Target Start/End: Complemental strand, 24469990 - 24469825
Alignment:
Q  82 ctcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaa 181  Q
    ||||| |||| | |||||| ||||| || ||||||||||| |||| ||||| ||||||||||||||||||||||||||| || | |||  ||||||||||    
T  24469990 ctcatgaacctaacgagtcgaactatatgtagctcaagttcagctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaa 24469891  T
Q  182 ctaagttcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattgc 247  Q
    | |||||||||     || ||| ||||||| |  ||||||||| |||| |||||||| ||||||||    
T  24469890 ccaagttcaacggattaaatatcgagtcgaatgtcgaactataatcgagttggttcggttcattgc 24469825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 82 - 246
Target Start/End: Complemental strand, 47603035 - 47602871
Alignment:
Q  82 ctcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaa 181  Q
    ||||| |||| | |||||| ||||| || ||||||||||| |||| ||||| ||||||||||||||||||||||||||| || | |||  ||||||||||    
T  47603035 ctcatgaacctaacgagtcgaactatatgtagctcaagttcagctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaa 47602936  T
Q  182 ctaagttcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattg 246  Q
    | |||||||||     || ||| ||||||| |  ||||||||| |||| |||||||| |||||||    
T  47602935 ccaagttcaacggattaaatatcgagtcgaatgtcgaactataatcgagttggttcggttcattg 47602871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 82 - 192
Target Start/End: Complemental strand, 37441359 - 37441249
Alignment:
Q  82 ctcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaa 181  Q
    ||||| |||| | |||||| ||||| || ||||||||||| |||| ||||| ||||||||||||||||||||||||||| || | |||  ||||||||||    
T  37441359 ctcattaacctaacgagtcgaactatatgtagctcaagttcagctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaa 37441260  T
Q  182 ctaagttcaac 192  Q
    | |||||||||    
T  37441259 ccaagttcaac 37441249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 88 - 246
Target Start/End: Complemental strand, 45581175 - 45581017
Alignment:
Q  88 aaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagt 187  Q
    |||||| |||||| ||| | |||||||| | ||| | || ||||| |||| ||||||||||||| ||||||||||||| | |  ||||||||||| ||||    
T  45581175 aaccaaacgagtcgaaccatatatagctaatgttcatctcatttagttaatgaacttaattttccgctcaagttcaactcatttggttcatgaaccaagt 45581076  T
Q  188 tcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattg 246  Q
    ||||| ||  |||||| || ||||||| |||||||| ||| | |||||||| |||||||    
T  45581075 tcaacgagataattatcgaatcgagtttcgaactattttcaagttggttcggttcattg 45581017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 65 - 246
Target Start/End: Original strand, 31869544 - 31869725
Alignment:
Q  65 atatattgtcaagtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaa 164  Q
    ||||||| || || || ||||| ||||||||||||| || || ||| ||||||||||  ||| |||||||||||||||||||||||||||| ||||||      
T  31869544 atatattatcgagccagctcatgaaccaaccgagtcgaattatatacagctcaagttcggctcatttatttaacgaacttaattttcagcttaagttcgg 31869643  T
Q  165 cccgtccggttcatgaactaagttcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattg 246  Q
    | | |  ||||||||||| ||||||||| |   |||| | || || |||||||||||||  |||| || ||||| |||||||    
T  31869644 ctcatttggttcatgaaccaagttcaacgatttaattgtcgaatcaagttccgaactattgtcgaattagttcggttcattg 31869725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 76 - 247
Target Start/End: Original strand, 32179819 - 32179990
Alignment:
Q  76 agtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggtt 175  Q
    ||||| ||||| |||| | |||||| ||||| || ||||||||||| |||| ||||| ||||||||||||||||||||||||||| || | | |  ||||    
T  32179819 agtcatctcatgaaccgaacgagtcgaactatatgtagctcaagttcagctcatttaattaacgaacttaattttcagctcaagtccagctcattaggtt 32179918  T
Q  176 catgaactaagttcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattgc 247  Q
     |||||| |||||||||     || ||| ||||||| |  ||||||||| |||| |||||||| ||||||||    
T  32179919 tatgaaccaagttcaacggattaaatatcgagtcgaatgtcgaactataatcgagttggttcggttcattgc 32179990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 88 - 247
Target Start/End: Original strand, 35810691 - 35810850
Alignment:
Q  88 aaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagt 187  Q
    |||||| |||||| |||||||||||| |||||||  ||| | |||||| ||||||||||||||||||||||||||  | | |  ||||||||||| ||||    
T  35810691 aaccaaacgagtcgaactacatatagttcaagttcggctcaattatttgacgaacttaattttcagctcaagttcggctcatttggttcatgaaccaagt 35810790  T
Q  188 tcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattgc 247  Q
    ||||| |   |||| | || |||| || |||||| || |||| |||||||| ||||||||    
T  35810791 tcaacgaatcaattgtcgaatcgaattacgaactttaatcgagttggttcggttcattgc 35810850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 88 - 227
Target Start/End: Complemental strand, 43087633 - 43087494
Alignment:
Q  88 aaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagt 187  Q
    |||||| ||| || ||||| ||||| |||||||| | || ||||| |||||||||||||| || || ||||||||  | |||  ||||||||||| ||||    
T  43087633 aaccaaacgaatcgaactatatataactcaagttcaactcatttaattaacgaacttaatctttagttcaagttcggctcgtttggttcatgaaccaagt 43087534  T
Q  188 tcaacaagcaaattattgagtcgagttccgaactatattc 227  Q
    ||||||| | |||||  ||||||||||||||||| |||||    
T  43087533 tcaacaaactaattaccgagtcgagttccgaactttattc 43087494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 88 - 246
Target Start/End: Original strand, 19508501 - 19508659
Alignment:
Q  88 aaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagt 187  Q
    |||||| | |||| ||||| ||||| |||||| | | || ||||| |||||||||||||| || |||||||||||  | |||  ||||||||||| ||||    
T  19508501 aaccaaacaagtcgaactatatataactcaaggtcaactcatttagttaacgaacttaatctttagctcaagttcggctcgtttggttcatgaaccaagt 19508600  T
Q  188 tcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattg 246  Q
    ||||| | | |||||  ||||||||||||||||| ||||||| |||  ||| |||||||    
T  19508601 tcaacgaactaattaccgagtcgagttccgaactttattcgagttgtatcggttcattg 19508659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 59 - 162
Target Start/End: Original strand, 7596337 - 7596440
Alignment:
Q  59 atatacatatattgtcaagtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaa 158  Q
    ||||| ||||||  || ||||| ||||| || ||| |||||| |||||||||||| ||||||| |||| | ||| ||| |||||||||||||||||||||    
T  7596337 atatatatatataatcgagtcatctcatgaatcaaacgagtcgaactacatatagttcaagttcagctcaattagttagcgaacttaattttcagctcaa 7596436  T
Q  159 gttc 162  Q
    ||||    
T  7596437 gttc 7596440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 128 - 247
Target Start/End: Original strand, 28006363 - 28006482
Alignment:
Q  128 atttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagcaaattattgagtcgagttccgaactatattc 227  Q
    ||||||||||||| ||||||||||| ||||||||| || | |  ||||||||||| ||||||||| ||  |||||| || |||| |  |||||||| |||    
T  28006363 atttatttaacgagcttaattttcaactcaagttcgactcatttggttcatgaaccaagttcaacgagtcaattatcgaatcgaatctcgaactattttc 28006462  T
Q  228 gatttggttcgcttcattgc 247  Q
    || |||||||| ||||||||    
T  28006463 gagttggttcggttcattgc 28006482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 76 - 247
Target Start/End: Original strand, 36419062 - 36419233
Alignment:
Q  76 agtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggtt 175  Q
    ||||| ||||| |||| | |||||| ||||| || ||||||||||| |||| ||||| |||||||||||||||||| |||||||| || | | |  ||||    
T  36419062 agtcatctcatgaacctaacgagtcgaactatatgtagctcaagttcagctcatttaattaacgaacttaattttcggctcaagtccagctcattaggtt 36419161  T
Q  176 catgaactaagttcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattgc 247  Q
    ||||||| |||||| ||     || ||| ||||||| |  ||||||||| |||| |||||||| ||||||||    
T  36419162 catgaaccaagttcgacggattaaatatcgagtcgaatgtcgaactataatcgagttggttcggttcattgc 36419233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 128 - 247
Target Start/End: Original strand, 44596530 - 44596649
Alignment:
Q  128 atttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagcaaattattgagtcgagttccgaactatattc 227  Q
    |||||||||||||||||||||||||| ||||||||| | | |  ||||||||||| || |||||| ||  |||| | || ||||||||| ||||||  ||    
T  44596530 atttatttaacgaacttaattttcagttcaagttcagctcatttggttcatgaaccaaattcaacgagttaattgtcgaatcgagttccaaactattgtc 44596629  T
Q  228 gatttggttcgcttcattgc 247  Q
    || |||||||| ||||||||    
T  44596630 gagttggttcggttcattgc 44596649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 88 - 161
Target Start/End: Original strand, 23916783 - 23916856
Alignment:
Q  88 aaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagtt 161  Q
    |||||| |||||| |||||||||| ||||||||| |||| | ||| || |||||||||||||||||||||||||    
T  23916783 aaccaaacgagtcgaactacatattgctcaagttcagctcaattagttgacgaacttaattttcagctcaagtt 23916856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 102 - 247
Target Start/End: Complemental strand, 25125038 - 25124893
Alignment:
Q  102 aactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagcaaatt 201  Q
    |||||||||||||||||||| |||| | ||| || ||||| ||||||||||||||||||||  | | |  ||||||||||| ||||||||| |   ||||    
T  25125038 aactacatatagctcaagttcagctcaattagttcacgaaattaattttcagctcaagttcggctcatttggttcatgaaccaagttcaacgaatcaatt 25124939  T
Q  202 attgagtcgagttccgaactatattcgatttggttcgcttcattgc 247  Q
    ||  | |||| || |||||| || |||| |||||||| ||||||||    
T  25124938 atcaaatcgaattacgaactttaatcgagttggttcggttcattgc 25124893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 111 - 247
Target Start/End: Original strand, 7702831 - 7702967
Alignment:
Q  111 tagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagcaaattattgagtcg 210  Q
    ||||| ||||| |||| ||||| ||||||||||||||||||||||||||| || | |||  | ||||||||| |||||||||     || ||| ||||||    
T  7702831 tagcttaagttcagctcatttaattaacgaacttaattttcagctcaagtccagctcgttagcttcatgaaccaagttcaacggattaaatatcgagtcg 7702930  T
Q  211 agttccgaactatattcgatttggttcgcttcattgc 247  Q
    | |  ||||||||| |||| |||||||| ||||||||    
T  7702931 aatgtcgaactataatcgagttggttcggttcattgc 7702967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 115 - 247
Target Start/End: Complemental strand, 29677659 - 29677527
Alignment:
Q  115 tcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagcaaattattgagtcgagtt 214  Q
    ||||||| |||| |||||||||| || ||||||||||| ||||||||| || | |  ||||| ||||| ||||||||| | | ||||||  | ||||||     
T  29677659 tcaagttcagctcatttatttaaagagcttaattttcaactcaagttcgactcatttggttcgtgaaccaagttcaacgaaccaattatcaaatcgagta 29677560  T
Q  215 ccgaactatattcgatttggttcgcttcattgc 247  Q
     |||||||| ||||| |||||||| ||||||||    
T  29677559 tcgaactattttcgagttggttcggttcattgc 29677527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 81 - 192
Target Start/End: Complemental strand, 39802941 - 39802830
Alignment:
Q  81 actcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatga 180  Q
    |||||| |||||| ||| || | ||| | ||||||||||||  ||| ||||||||||||||||||||||||| ||||||||| || | |  |||||||||    
T  39802941 actcatgaaccaaacgaatcgagctatacatagctcaagttcggctcatttatttaacgaacttaattttcaactcaagttcgactcatttggttcatga 39802842  T
Q  181 actaagttcaac 192  Q
    || | |||||||    
T  39802841 accatgttcaac 39802830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 162
Target Start/End: Complemental strand, 46265140 - 46265037
Alignment:
Q  59 atatacatatattgtcaagtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaa 158  Q
    ||||| ||||||  || ||||| ||||| |||||| |||||| | ||| |||||| ||||||| |||| | ||| ||| |||||||||||||||||||||    
T  46265140 atatatatatataatcgagtcatctcatgaaccaaacgagtcgacctatatatagttcaagttcagctcaattagttagcgaacttaattttcagctcaa 46265041  T
Q  159 gttc 162  Q
    ||||    
T  46265040 gttc 46265037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 245
Target Start/End: Complemental strand, 5204596 - 5204479
Alignment:
Q  128 atttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagcaaattattgagtcgagttccgaactatattc 227  Q
    ||||||||||||||||||||||||| ||||||||| || | |  |||||| |||| ||||||||| ||  |||||| || |||| |  | |||||| |||    
T  5204596 atttatttaacgaacttaattttcaactcaagttcgactcatttggttcacgaaccaagttcaacgagtcaattatcgaatcgaatctcaaactattttc 5204497  T
Q  228 gatttggttcgcttcatt 245  Q
    || |||||||| ||||||    
T  5204496 gagttggttcgattcatt 5204479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 59 - 162
Target Start/End: Original strand, 15662893 - 15662996
Alignment:
Q  59 atatacatatattgtcaagtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaa 158  Q
    ||||| ||||||  || ||||| ||||| ||||||  ||||| |||||||||||||| |||||  | | | ||| || ||||||||||||||||||||||    
T  15662893 atatatatatataatcgagtcatctcatgaaccaaaagagtcgaactacatatagcttaagttcggttcaattagttgacgaacttaattttcagctcaa 15662992  T
Q  159 gttc 162  Q
    ||||    
T  15662993 gttc 15662996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 95 - 162
Target Start/End: Original strand, 40002874 - 40002941
Alignment:
Q  95 cgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttc 162  Q
    |||||| |||||||||||||||||||| | || | ||| || |||||||||||||||| |||||||||    
T  40002874 cgagtcgaactacatatagctcaagttcaactcaattagttgacgaacttaattttcaactcaagttc 40002941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 247
Target Start/End: Complemental strand, 42916293 - 42916122
Alignment:
Q  76 agtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggtt 175  Q
    ||||| ||||| |||||| |||||| | ||| |||| | ||||||| |||| | ||| ||| |||||||||||||||||||||||||  | | |  ||||    
T  42916293 agtcatctcatgaaccaaacgagtcgacctatatatggttcaagttcagctcaattagttagcgaacttaattttcagctcaagttcggctcatttggtt 42916194  T
Q  176 catgaactaagttcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattgc 247  Q
    ||||||| |||||| || |   |||||| || |||| || |||||  || |||| |||||||| ||||||||    
T  42916193 catgaaccaagttcgacgaatcaattatcgaatcgaattacgaacactaatcgaattggttcggttcattgc 42916122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 111 - 164
Target Start/End: Complemental strand, 8828370 - 8828317
Alignment:
Q  111 tagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaa 164  Q
    ||||||||||| | |||||||| |||||  ||||||||||||||||||||||||    
T  8828370 tagctcaagttcaacttatttagttaacagacttaattttcagctcaagttcaa 8828317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 59 - 191
Target Start/End: Original strand, 14101806 - 14101939
Alignment:
Q  59 atatacatatattgtcaagtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaatttt-cagctca 157  Q
    ||||| ||||||| || |||| |||||  ||||||||||||| || || ||| | || |||||  |||  ||||||||||||| |||||||| |||||||    
T  14101806 atatatatatattatcgagtcgactcaggaaccaaccgagtcgaattatatacaactaaagttcggctcgtttatttaacgaatttaatttttcagctca 14101905  T
Q  158 agttcaacccgtccggttcatgaactaagttcaa 191  Q
    | |||| | | |  ||||||||||||||||||||    
T  14101906 aattcagctcatttggttcatgaactaagttcaa 14101939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 108 - 165
Target Start/End: Complemental strand, 33233697 - 33233640
Alignment:
Q  108 atatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaac 165  Q
    |||||||||||||| | ||  |||| ||||||| ||||||||||||||||||||||||    
T  33233697 atatagctcaagttaaactcgtttagttaacgaccttaattttcagctcaagttcaac 33233640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 114 - 219
Target Start/End: Complemental strand, 51432344 - 51432239
Alignment:
Q  114 ctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagcaaattattgagtcgagt 213  Q
    |||||||| |||| |||||||||||||  ||||||||||||| || |||||| | |  ||||||||||| |||| |||| ||  |||| |||| |||||     
T  51432344 ctcaagttcagctaatttatttaacgattttaattttcagcttaatttcaactcatttggttcatgaaccaagtacaacgagttaattgttgaatcgagc 51432245  T
Q  214 tccgaa 219  Q
    ||||||    
T  51432244 tccgaa 51432239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 246
Target Start/End: Original strand, 31816567 - 31816699
Alignment:
Q  114 ctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagcaaattattgagtcgagt 213  Q
    ||||||||  ||| |||||||| |||| ||||||||||  || ||||||||| | |  ||||||||||| ||||||||| |   |||||  || | ||||    
T  31816567 ctcaagttcggctcatttatttgacgagcttaattttcgactgaagttcaactcatttggttcatgaaccaagttcaacgaatcaattaccgaattgagt 31816666  T
Q  214 tccgaactatattcgatttggttcgcttcattg 246  Q
    | |||||||| ||||| |||||||| |||||||    
T  31816667 ttcgaactattttcgagttggttcggttcattg 31816699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 247
Target Start/End: Complemental strand, 40159770 - 40159638
Alignment:
Q  115 tcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagcaaattattgagtcgagtt 214  Q
    ||||||| | || ||||||||||||||||||||||||| ||||||||| || | |  | ||||||||| |||| |||  | | |||||| || |||| |     
T  40159770 tcaagttcaactcatttatttaacgaacttaattttcaactcaagttcgactcatttgattcatgaaccaagtccaatgaaccaattatcgaatcgaata 40159671  T
Q  215 ccgaactatattcgatttggttcgcttcattgc 247  Q
     | |||||| ||||| |||||||| ||||||||    
T  40159670 tcaaactattttcgagttggttcggttcattgc 40159638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 115 - 246
Target Start/End: Original strand, 7995971 - 7996102
Alignment:
Q  115 tcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagcaaattattgagtcgagtt 214  Q
    |||||||||||| ||||||||||||| ||||||||| | || |||||| || | |  |||| |||||| ||||||||| |   |||||| || |||| |     
T  7995971 tcaagttgagctcatttatttaacgagcttaattttaaacttaagttcgactcattaggtttatgaaccaagttcaacgaatcaattatcgaatcgaatc 7996070  T
Q  215 ccgaactatattcgatttggttcgcttcattg 246  Q
     |||||||| ||| | |||||||| |||||||    
T  7996071 tcgaactattttcaagttggttcggttcattg 7996102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 194
Target Start/End: Complemental strand, 7016222 - 7016136
Alignment:
Q  108 atatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaa 194  Q
    |||||||||||| | ||||||||   ||||| |||||| |||| |||||||||||| | | |  ||||||||||| |||||||||||    
T  7016222 atatagctcaagctcagcttattaggttaacaaacttagttttgagctcaagttcagctcatttggttcatgaaccaagttcaacaa 7016136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 246
Target Start/End: Complemental strand, 15257298 - 15257180
Alignment:
Q  128 atttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagcaaattattgagtcgagttccgaactatattc 227  Q
    ||||||||||||| ||||||||||| ||||||||| || | |  ||||||||||| |||| |||  | | |||||| || ||||||  | |||||| ||     
T  15257298 atttatttaacgagcttaattttcaactcaagttcgactcatttggttcatgaaccaagtccaatgaaccaattatcgaatcgagtatcaaactattttt 15257199  T
Q  228 gatttggttcgcttcattg 246  Q
    || |||||||| |||||||    
T  15257198 gagttggttcggttcattg 15257180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 162
Target Start/End: Original strand, 20349119 - 20349193
Alignment:
Q  88 aaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttc 162  Q
    |||||| |||||| || || |||||| |||| || |||| ||||| ||||||||||||||||||| || ||||||    
T  20349119 aaccaaacgagtcgaattatatatagttcaaattcagctcatttaattaacgaacttaattttcatctgaagttc 20349193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 162
Target Start/End: Original strand, 42937047 - 42937121
Alignment:
Q  88 aaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttc 162  Q
    |||||| |||||  ||||| | |||||||||||| |||| | ||| || |||||||||||||| |||||||||||    
T  42937047 aaccaaacgagttgaactatacatagctcaagttcagctcaattagttgacgaacttaattttaagctcaagttc 42937121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 246
Target Start/End: Complemental strand, 12224684 - 12224584
Alignment:
Q  146 attttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcatt 245  Q
    |||||||||||||||||  | | |  ||||||||||| ||||||||| ||  |||| | || |||| |||||||||||  |||| |||||||| ||||||    
T  12224684 attttcagctcaagttcggctcatttggttcatgaaccaagttcaacgagttaattgtcgaatcgaattccgaactattgtcgagttggttcggttcatt 12224585  T
Q  246 g 246  Q
    |    
T  12224584 g 12224584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 227
Target Start/End: Complemental strand, 13645352 - 13645208
Alignment:
Q  83 tcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaac 182  Q
    |||| ||||||  ||||| ||||| ||||| ||||| || | || ||||| |||||||||||||| || |||||||||||  | |||  | |||||||||    
T  13645352 tcatgaaccaaatgagtcgaactatatataactcaaattcaactcatttacttaacgaacttaatctttagctcaagttcggctcgtttgattcatgaac 13645253  T
Q  183 taagttcaacaagcaaattattgagtcgagttccgaactatattc 227  Q
     ||||| ||  | | |||||  |||||||||||| |||| |||||    
T  13645252 caagttaaatgaactaattaccgagtcgagttccaaactttattc 13645208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 30251437 - 30251473
Alignment:
Q  128 atttatttaacgaacttaattttcagctcaagttcaa 164  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  30251437 atttagttaacgaacttaatttttagctcaagttcaa 30251473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 162
Target Start/End: Original strand, 50447336 - 50447388
Alignment:
Q  110 atagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttc 162  Q
    |||| ||||||| | || ||||||||||||||||||||||| || ||||||||    
T  50447336 atagttcaagttcaactcatttatttaacgaacttaattttaagttcaagttc 50447388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 82 - 247
Target Start/End: Complemental strand, 4441474 - 4441309
Alignment:
Q  82 ctcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaa 181  Q
    ||||| |||||||||| || ||||| ||| || ||||||| |||| ||||||||||||||||||||||||| |||||||||| | | |   |||| ||||    
T  4441474 ctcatgaaccaaccgaatcgaactatatacagttcaagttcagctcatttatttaacgaacttaattttcaactcaagttcagctcatttagttcgtgaa 4441375  T
Q  182 ctaagttcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattgc 247  Q
    | ||||||||| ||| |||| | || ||||||| ||||||||  |||| |||||||| ||||||||    
T  4441374 ccaagttcaacgagctaattgtcgaatcgagtttcgaactattgtcgagttggttcggttcattgc 4441309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 65 - 162
Target Start/End: Original strand, 1501798 - 1501895
Alignment:
Q  65 atatattgtcaagtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttc 162  Q
    ||||||| || ||||| ||||| ||||||||||||| ||||| ||| |||| |||||  ||| |||||||||||||||||||||||||||||||||||    
T  1501798 atatattatcgagtcagctcatgaaccaaccgagtcgaactatatacagcttaagtttggctcatttatttaacgaacttaattttcagctcaagttc 1501895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 59 - 247
Target Start/End: Original strand, 12428831 - 12429008
Alignment:
Q  59 atatacatatattgtcaagtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaa 158  Q
    ||||| ||||||| || ||||||||||| |||||| |||||  |  |||||||||||||||||  ||| ||||||||||||||||||||||||||||| |    
T  12428831 atatatatatattatcgagtcaactcatgaaccaatcgagttgagttacatatagctcaagttcggctcatttatttaacgaacttaattttcagctc-a 12428929  T
Q  159 gttcaacccgtccggttcatgaactaagttcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattgc 247  Q
    |||          ||||||| ||| ||||||||||||   ||| | ||||||||||| |||||||||| || |||||||| ||||||||    
T  12428930 gtt----------ggttcataaaccaagttcaacaagttcattgtcgagtcgagttctgaactatatttgagttggttcggttcattgc 12429008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 88 - 247
Target Start/End: Original strand, 33110431 - 33110590
Alignment:
Q  88 aaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagt 187  Q
    |||||| |||||| ||||| ||||| ||||||||   || ||||| |||||||||||||| || |||| ||||||  | |||  ||||||||||| ||||    
T  33110431 aaccaaacgagtcgaactatatataactcaagttcgactcatttagttaacgaacttaatctttagcttaagttcggctcgtttggttcatgaaccaagt 33110530  T
Q  188 tcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattgc 247  Q
    ||||| | | |||||  ||||||||||||||||| ||||||| |||  ||| ||||||||    
T  33110531 tcaacgaactaattaccgagtcgagttccgaactttattcgagttgtatcggttcattgc 33110590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 95 - 192
Target Start/End: Original strand, 10346701 - 10346798
Alignment:
Q  95 cgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaac 192  Q
    |||||| ||||| || || |||||||| |||| ||||| ||||||||||||||||||||||||||| || | |||  ||||||||||| |||||||||    
T  10346701 cgagtcgaactatatgtaactcaagttcagctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaaccaagttcaac 10346798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 59 - 192
Target Start/End: Complemental strand, 10961992 - 10961859
Alignment:
Q  59 atatacatatattgtcaagtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaa 158  Q
    ||||| ||||||  || ||||| ||| | |||||| |||||| |||||||||||| ||||||| |||| | ||| || ||||||||||||||||||||||    
T  10961992 atatatatatataatcgagtcatctcgtgaaccaaacgagtcgaactacatatagttcaagttcagctcaattagttgacgaacttaattttcagctcaa 10961893  T
Q  159 gttcaacccgtccggttcatgaactaagttcaac 192  Q
     ||| || | |  ||||||||||| |||||||||    
T  10961892 attcgactcatttggttcatgaaccaagttcaac 10961859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 65 - 158
Target Start/End: Complemental strand, 11460196 - 11460103
Alignment:
Q  65 atatattgtcaagtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaa 158  Q
    ||||||| || ||||| ||||||||||||||||||| ||||| ||  | |||||||| |||| ||||||||||| ||||||||| |||||||||    
T  11460196 atatattatcgagtcagctcataaaccaaccgagtcgaactatattcaactcaagttcagctcatttatttaacaaacttaattctcagctcaa 11460103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 83 - 247
Target Start/End: Complemental strand, 3081890 - 3081726
Alignment:
Q  83 tcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaac 182  Q
    |||| |||||| |||||| ||||| |  ||| ||||||| |||| ||||| ||||||| ||||||||||| ||||||||| || | |  ||||| |||||    
T  3081890 tcatgaaccaaacgagtcgaactatacttagttcaagttcagctcatttaattaacgagcttaattttcaactcaagttcgactcatttggttcgtgaac 3081791  T
Q  183 taagttcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattgc 247  Q
     ||||||||| | | |||||| || ||||||  |||||||| |||||  ||||||| ||||||||    
T  3081790 caagttcaacgaaccaattatcgaatcgagtatcgaactattttcgagctggttcggttcattgc 3081726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 79 - 163
Target Start/End: Original strand, 6999231 - 6999315
Alignment:
Q  79 caactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttca 163  Q
    |||||||| ||||||||||||| ||||| ||| || ||||||| || | |||| |||||| ||||||||||||||||||||||||    
T  6999231 caactcatgaaccaaccgagtcgaactatataaagttcaagttcagttcatttgtttaacaaacttaattttcagctcaagttca 6999315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 128 - 252
Target Start/End: Original strand, 17441171 - 17441295
Alignment:
Q  128 atttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagcaaattattgagtcgagttccgaactatattc 227  Q
    |||||||| |||| ||||||||||| |||||||||||| | |  ||||||||||||||||||||| |   |||||   | ||||||| |||||||| |||    
T  17441171 atttatttgacgagcttaattttcaactcaagttcaactcatttggttcatgaactaagttcaacgaattaattaccaaatcgagtttcgaactattttc 17441270  T
Q  228 gatttggttcgcttcattgctaacc 252  Q
    |  |||||||| |||||||| ||||    
T  17441271 gggttggttcggttcattgccaacc 17441295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 88 - 247
Target Start/End: Complemental strand, 5640419 - 5640260
Alignment:
Q  88 aaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagt 187  Q
    |||||| |||||| ||||| |||||| ||||||| |||| | ||| || ||||||||||||||||| ||||||||  | | |  ||||||||||| ||||    
T  5640419 aaccaaacgagtcgaactatatatagttcaagttcagctcaattagttgacgaacttaattttcagttcaagttcggctcatttggttcatgaaccaagt 5640320  T
Q  188 tcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattgc 247  Q
    || || |   |||||| || |||| || |||||| || |||| |||||||| ||||||||    
T  5640319 tcgacgaatcaattatcgaatcgaattacgaactctaatcgagttggttcggttcattgc 5640260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 227
Target Start/End: Original strand, 22295929 - 22296028
Alignment:
Q  128 atttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagcaaattattgagtcgagttccgaactatattc 227  Q
    ||||| |||||||||||||| || |||||||||||  | |||  ||||||||||| ||||| || || | ||||| |||||||||||||||||| |||||    
T  22295929 atttacttaacgaacttaatctttagctcaagttcggctcgtttggttcatgaaccaagtttaataaactaattactgagtcgagttccgaactttattc 22296028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 83 - 245
Target Start/End: Original strand, 7437272 - 7437434
Alignment:
Q  83 tcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaac 182  Q
    |||| |||||| |||||| ||||| |  ||| ||||||| |||| ||||||||||||| ||||||||||| || |||||| || | |  ||||| |||||    
T  7437272 tcatgaaccaaacgagtcgaactatacttagttcaagttcagctcatttatttaacgagcttaattttcaactaaagttcgactcatttggttcgtgaac 7437371  T
Q  183 taagttcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcatt 245  Q
     ||||||||| | |  ||||| || ||||||  |||||||| ||||| || ||||| ||||||    
T  7437372 caagttcaacgaacccattatcgaatcgagtatcgaactattttcgagttagttcggttcatt 7437434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 88 - 162
Target Start/End: Complemental strand, 9950927 - 9950853
Alignment:
Q  88 aaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttc 162  Q
    |||||| |||||  |||||||||||||||||||| |||| | ||| || |||||||||||||||| |||||||||    
T  9950927 aaccaaacgagttgaactacatatagctcaagttcagctcaattagttgacgaacttaattttcaactcaagttc 9950853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 247
Target Start/End: Original strand, 13312022 - 13312156
Alignment:
Q  115 tcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagcaaattattgagtcgag-- 212  Q
    ||||||| | || ||||||||||||||||||||||||| ||||||||| || | |  ||||||||||| |||| |||  | | |||||| || |||||      
T  13312022 tcaagttcaactcatttatttaacgaacttaattttcaactcaagttcgactcatttggttcatgaaccaagtccaatgaaccaattatcgaatcgagta 13312121  T
Q  213 ttccgaactatattcgatttggttcgcttcattgc 247  Q
    |  |||||||| ||||| |||||||| ||||||||    
T  13312122 tatcgaactattttcgagttggttcggttcattgc 13312156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 156
Target Start/End: Original strand, 8200609 - 8200683
Alignment:
Q  82 ctcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctc 156  Q
    ||||| |||| | |||||| ||||| || ||||||||||| | || ||||| |||||||||||||||||||||||    
T  8200609 ctcatgaacctaacgagtcgaactatatgtagctcaagttcaactcatttaattaacgaacttaattttcagctc 8200683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 108 - 161
Target Start/End: Original strand, 32163534 - 32163587
Alignment:
Q  108 atatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagtt 161  Q
    |||| ||||||||| |||| ||||| ||||||||||||||||||| ||||||||    
T  32163534 atatggctcaagttaagctcatttagttaacgaacttaattttcaactcaagtt 32163587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 162
Target Start/End: Original strand, 18095514 - 18095566
Alignment:
Q  110 atagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttc 162  Q
    |||||||||||| | || ||||||||||||||||||||||| | |||||||||    
T  18095514 atagctcaagttcatctcatttatttaacgaacttaatttttaactcaagttc 18095566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 88 - 252
Target Start/End: Complemental strand, 1840854 - 1840690
Alignment:
Q  88 aaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagt 187  Q
    ||||||||||| | ||||| ||| | |||||||| |||| |||||||| ||||||||||||||||||||||||||| | | |  ||||||||||| ||||    
T  1840854 aaccaaccgagccgaactatatacatctcaagttcagctcatttatttcacgaacttaattttcagctcaagttcagctcatttggttcatgaaccaagt 1840755  T
Q  188 tcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattgctaacc 252  Q
    ||||| ||  |||| | || | |||||| |||||||  |||| |||||||| |||||||| ||||    
T  1840754 tcaacgagttaattgtcgaattgagttctgaactattgtcgagttggttcggttcattgccaacc 1840690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 88 - 247
Target Start/End: Original strand, 26218020 - 26218179
Alignment:
Q  88 aaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagt 187  Q
    |||||| |||||| ||||| ||||| |||||||| | || ||||| |||||||||||||| || |||||||||||  | |||  ||||||||||| ||||    
T  26218020 aaccaaacgagtcgaactatatataactcaagtttaactcatttagttaacgaacttaatctttagctcaagttcggctcgtttggttcatgaaccaagt 26218119  T
Q  188 tcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattgc 247  Q
    ||||| | | |||||  ||||||||||||||||| |||| || |||  ||| ||||||||    
T  26218120 tcaacgaactaattaccgagtcgagttccgaactttatttgagttgtatcggttcattgc 26218179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 109 - 247
Target Start/End: Complemental strand, 3801510 - 3801372
Alignment:
Q  109 tatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagcaaattattgagt 208  Q
    ||||| ||||||| | || ||||| |||||||||||||||||||||||||||||  | | |  ||||||||||| ||||||||  | | |||| | ||||    
T  3801510 tatagttcaagttcaactcatttaattaacgaacttaattttcagctcaagttcggctcatttggttcatgaaccaagttcaatgaaccaattgtcgagt 3801411  T
Q  209 cgagttccgaactatattcgatttggttcgcttcattgc 247  Q
    ||| || |||||||||||||| |||||||| ||||||||    
T  3801410 cgaattacgaactatattcgagttggttcggttcattgc 3801372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 88 - 246
Target Start/End: Original strand, 41783298 - 41783456
Alignment:
Q  88 aaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagt 187  Q
    |||||| || ||| ||||||||||| |||||||| | || ||||| |||||||||||||| || |||||||||||  | | |  ||||||||||| ||||    
T  41783298 aaccaaacgggtcgaactacatataactcaagttcaactcatttagttaacgaacttaatctttagctcaagttcggctcatttggttcatgaaccaagt 41783397  T
Q  188 tcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattg 246  Q
    ||||| | | |||||  ||||||||||||||||| ||||||| |||  ||| |||||||    
T  41783398 tcaacgaactaattaccgagtcgagttccgaactttattcgagttgtatcggttcattg 41783456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 88 - 229
Target Start/End: Complemental strand, 14500873 - 14500732
Alignment:
Q  88 aaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagt 187  Q
    |||||| |||||| | ||| ||||| |||||||| | || ||| | |||||||||||||| || |||||||||||  | |||  ||||||||||| ||||    
T  14500873 aaccaaacgagtcgagctatatataactcaagttcaactcattcagttaacgaacttaatctttagctcaagttcggctcgtttggttcatgaaccaagt 14500774  T
Q  188 tcaacaagcaaattattgagtcgagttccgaactatattcga 229  Q
    ||||| | | |||||| ||||||||||||||||| |||||||    
T  14500773 tcaacgaactaattatcgagtcgagttccgaactgtattcga 14500732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 97 - 192
Target Start/End: Original strand, 27906080 - 27906175
Alignment:
Q  97 agtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaac 192  Q
    |||| ||||| || ||||||||||| |||| ||||| ||||||||||||||||||||||||||| || | |||  ||||||||||| |||||||||    
T  27906080 agtcgaactatatgtagctcaagttcagctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaaccaagttcaac 27906175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 86 - 228
Target Start/End: Complemental strand, 11136175 - 11136034
Alignment:
Q  86 taaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaa 185  Q
    |||||||| |||||| ||||| ||||| |||||||| | || ||||| |||||||||||||| || |||||||||||  | |||  ||||| ||||| ||    
T  11136175 taaaccaaacgagtcgaactatatataactcaagttcaactcatttagttaacgaacttaatctttagctcaagttcggctcgtttggttc-tgaaccaa 11136077  T
Q  186 gttcaacaagcaaattattgagtcgagttccgaactatattcg 228  Q
    ||||||| | | |||||  ||||||||||||||||| ||||||    
T  11136076 gttcaacgaactaattaccgagtcgagttccgaactttattcg 11136034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 109 - 247
Target Start/End: Complemental strand, 38523007 - 38522869
Alignment:
Q  109 tatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagcaaattattgagt 208  Q
    ||||| ||||||| |||| ||||| ||||||||||||||||||||||||||||   | | |  ||||||||||| ||||||||    | |||||| ||||    
T  38523007 tatagttcaagttcagctcatttaattaacgaacttaattttcagctcaagtttggctcatttggttcatgaaccaagttcaatggaccaattatcgagt 38522908  T
Q  209 cgagttccgaactatattcgatttggttcgcttcattgc 247  Q
    | | || |||||||||||||| |||||||| ||||||||    
T  38522907 caaattacgaactatattcgagttggttcggttcattgc 38522869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 109 - 246
Target Start/End: Original strand, 31021857 - 31021994
Alignment:
Q  109 tatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagcaaattattgagt 208  Q
    ||||||| || || |||| ||||| ||||| ||||||||||  ||||||| |||| | | |  ||||||||||| ||  ||||| ||  |||||| ||||    
T  31021857 tatagcttaaattcagctcatttagttaacaaacttaatttcaagctcaaattcagctcatttggttcatgaaccaaactcaacgagttaattatcgagt 31021956  T
Q  209 cgagttccgaactatattcgatttggttcgcttcattg 246  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  31021957 cgagttccgaactatattcgagttggttcggttcattg 31021994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 82 - 237
Target Start/End: Complemental strand, 19282287 - 19282132
Alignment:
Q  82 ctcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaa 181  Q
    ||||| || |||||||||| ||||| ||| || ||||||| |||| || || ||||||||| |||||||||||||||||||| | | |  ||||||||||    
T  19282287 ctcatgaatcaaccgagtcgaactatatacagttcaagttcagctcatctacttaacgaacctaattttcagctcaagttcagctcatttggttcatgaa 19282188  T
Q  182 ctaagttcaacaagcaaattattgagtcgagttccgaactatattcgatttggttc 237  Q
    | ||||||||| ||  |||| | || |  |||||||||||||  |||| |||||||    
T  19282187 ccaagttcaacgagttaattgtcgaatgaagttccgaactattatcgagttggttc 19282132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 83 - 246
Target Start/End: Original strand, 31620836 - 31620999
Alignment:
Q  83 tcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaac 182  Q
    |||| |||||| |||||| || || || || |||||||| |||| ||||| |||||||||||||| ||||||| ||||||||| | |  |||||||||||    
T  31620836 tcattaaccaaacgagtcgaattatatgtaactcaagttcagctcatttaattaacgaacttaatattcagctgaagttcaactcattaggttcatgaac 31620935  T
Q  183 taagttcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattg 246  Q
     || |||||    | |||| | ||||||| || |||||||||||| | |||||||| |||||||    
T  31620936 caaattcaatggactaattgtcgagtcgaatttcgaactatattcaagttggttcggttcattg 31620999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 192
Target Start/End: Original strand, 18880179 - 18880269
Alignment:
Q  102 aactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaac 192  Q
    ||||| || ||||||||||| |||| ||||| |||||||||||||||||||||| |||| || | |||  ||||||||||| |||||||||    
T  18880179 aactatatgtagctcaagttcagctcatttaattaacgaacttaattttcagcttaagtccagctcgttaggttcatgaaccaagttcaac 18880269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 83 - 247
Target Start/End: Original strand, 10493953 - 10494117
Alignment:
Q  83 tcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaac 182  Q
    |||| |||||| |||||| ||||| |  ||| ||||||| |||| ||||||||||||| ||||||||||| ||||||||| || | |  ||||  |||||    
T  10493953 tcatgaaccaaacgagtcgaactatacttagttcaagttcagctcatttatttaacgagcttaattttcaactcaagttcgactcatttggtttgtgaac 10494052  T
Q  183 taagttcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattgc 247  Q
     ||||||||| | | ||||||||| |||| |  | |||||| || || |||||||| ||||||||    
T  10494053 caagttcaacgaaccaattattgaatcgaatatcaaactatttttgagttggttcggttcattgc 10494117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 80 - 247
Target Start/End: Original strand, 15933125 - 15933295
Alignment:
Q  80 aactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaa---ttttcagctcaagttcaacccgtccggttc 176  Q
    ||||||| |||||| |||||| ||| |  |||||||||||||  ||| |||||||||||||||||||   | || |||||| ||||||| | |  |||||    
T  15933125 aactcatgaaccaaacgagtcgaaccatctatagctcaagttcggctcatttatttaacgaacttaatagtatttagctcatgttcaactcattaggttc 15933224  T
Q  177 atgaactaagttcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattgc 247  Q
    |||||| ||||||||| |   || | | ||||||| || ||||||||| |||| |||||||| ||||||||    
T  15933225 atgaaccaagttcaacgaattaactgtcgagtcgaatttcgaactatactcgagttggttcggttcattgc 15933295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 88 - 162
Target Start/End: Original strand, 20188946 - 20189020
Alignment:
Q  88 aaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttc 162  Q
    |||||| |||||| |||||||||||||||||||| |||| | ||| || |||||||||||||| || ||||||||    
T  20188946 aaccaaacgagtcgaactacatatagctcaagttcagctcaattagttgacgaacttaatttttagttcaagttc 20189020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 160
Target Start/End: Original strand, 29328040 - 29328089
Alignment:
Q  111 tagctcaagttgagcttatttatttaacgaacttaattttcagctcaagt 160  Q
    ||||||||||| |||| ||||| |||||||||||||||||||||||||||    
T  29328040 tagctcaagttaagctcatttaattaacgaacttaattttcagctcaagt 29328089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 82 - 150
Target Start/End: Original strand, 3457793 - 3457861
Alignment:
Q  82 ctcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaatttt 150  Q
    ||||| |||||| ||||||| |||| |||||||||||||  | || |||||||||||||||||||||||    
T  3457793 ctcatgaaccaaacgagtcagactatatatagctcaagtccaactcatttatttaacgaacttaatttt 3457861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 182
Target Start/End: Original strand, 2675989 - 2676083
Alignment:
Q  88 aaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaac 182  Q
    |||||| |||||| || ||||||||| ||||||| |  ||| ||| || |||||||||||||||||||||||||| || | |  |||||||||||    
T  2675989 aaccaaacgagtcgaattacatatagttcaagttcaatttaattagttgacgaacttaattttcagctcaagttcgactcatttggttcatgaac 2676083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 162
Target Start/End: Complemental strand, 20190763 - 20190677
Alignment:
Q  76 agtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttc 162  Q
    ||||| ||||| |||||| ||| || |||||||||||||||||||| |||| | |||   | ||||||||||||| |||||||||||    
T  20190763 agtcatctcatgaaccaaacgattcgaactacatatagctcaagttcagctcaattaggcagcgaacttaattttgagctcaagttc 20190677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 247
Target Start/End: Complemental strand, 27450753 - 27450589
Alignment:
Q  83 tcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaac 182  Q
    |||| |||||| |||||| ||| |||| ||| ||||||| | || ||||||||||||| ||||||||| | ||||||||| || | |  ||||||||||     
T  27450753 tcatgaaccaaacgagtcgaaccacatttagttcaagttcaactcatttatttaacgagcttaattttaaactcaagttcgactcattaggttcatgaat 27450654  T
Q  183 taagttcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattgc 247  Q
     || |||||| |   |||||| || |||| |  || ||||| ||||| |||||||| ||||||||    
T  27450653 caaattcaacgaatcaattatcgaatcgaatctcgcactattttcgagttggttcggttcattgc 27450589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 32157083 - 32157031
Alignment:
Q  109 tatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagtt 161  Q
    ||||| ||||||| |||| ||||| ||||||||||||||||||| ||||||||    
T  32157083 tatagttcaagttcagctcatttaattaacgaacttaattttcaactcaagtt 32157031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 111 - 246
Target Start/End: Original strand, 27196073 - 27196208
Alignment:
Q  111 tagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagcaaattattgagtcg 210  Q
    ||||||||||| | ||  ||||| |||||| ||||||||||| ||||||||| || | |  ||||||||||| || || ||| |   |||||| || |||    
T  27196073 tagctcaagttcaactcctttatctaacgagcttaattttcaactcaagttcgactcatttggttcatgaaccaaatttaacgaatcaattatcgaatcg 27196172  T
Q  211 agttccgaactatattcgatttggttcgcttcattg 246  Q
    |||  |||||||| ||||| |||||||| |||||||    
T  27196173 agtctcgaactattttcgagttggttcggttcattg 27196208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 103 - 150
Target Start/End: Original strand, 39414169 - 39414216
Alignment:
Q  103 actacatatagctcaagttgagcttatttatttaacgaacttaatttt 150  Q
    |||| ||||| |||||||| |||| |||||||||||||||||||||||    
T  39414169 actatatataactcaagttcagctcatttatttaacgaacttaatttt 39414216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 192
Target Start/End: Original strand, 39407374 - 39407483
Alignment:
Q  83 tcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaac 182  Q
    |||| |||||| |||||| ||| | || ||| ||||||| | || ||||||||||||| ||||||||| | ||||||||| || | |  ||||||||||     
T  39407374 tcatgaaccaaacgagtcgaaccatatttagttcaagttcaactcatttatttaacgagcttaattttaaactcaagttcgactcattaggttcatgaat 39407473  T
Q  183 taagttcaac 192  Q
     |||||||||    
T  39407474 caagttcaac 39407483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 192
Target Start/End: Original strand, 1225364 - 1225428
Alignment:
Q  128 atttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaac 192  Q
    |||||||| |||| ||||||||||| ||||||||| || | |  ||||||| |||||||||||||    
T  1225364 atttatttgacgagcttaattttcaactcaagttcgactcatttggttcataaactaagttcaac 1225428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 59 - 194
Target Start/End: Complemental strand, 26817 - 26682
Alignment:
Q  59 atatacatatattgtcaagtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaa 158  Q
    ||||| ||||||| || ||| | ||| | |||||| |||||| |||||||||||||| ||||| |||| | ||| || ||||||||||||||||||||||    
T  26817 atatatatatattatcgagttatctcgtgaaccaaacgagtcgaactacatatagcttaagttcagctcaattagttgacgaacttaattttcagctcaa 26718  T
Q  159 gttcaacccgtccggttcatgaactaagttcaacaa 194  Q
    |||| || | |  | ||||||||| |||||||||||    
T  26717 gttcgactcatttgattcatgaaccaagttcaacaa 26682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 82 - 191
Target Start/End: Original strand, 19263 - 19372
Alignment:
Q  82 ctcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaa 181  Q
    ||||| |||| | |||||| || || || ||||||||||| |||| ||||| ||||||||||||||||||||||||||| || | |||  ||||||||||    
T  19263 ctcatgaacctaacgagtcgaattatatgtagctcaagttcagctcatttaattaacgaacttaattttcagctcaagtccagctcgttaggttcatgaa 19362  T
Q  182 ctaagttcaa 191  Q
    | ||||||||    
T  19363 ccaagttcaa 19372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 102 - 246
Target Start/End: Original strand, 11377 - 11521
Alignment:
Q  102 aactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagcaaatt 201  Q
    ||||| |||||||| |||||  ||| ||||||||||||||||||||||| | || ||||||| | | |  |||||||||||||||||| || ||  ||||    
T  11377 aactatatatagcttaagttcggctcatttatttaacgaacttaatttttaacttaagttcacctcatttggttcatgaactaagttcgacgaggtaatt 11476  T
Q  202 attgagtcgagttccgaactatattcgatttggttcgcttcattg 246  Q
     | || ||||||||| ||||||  |||| |||||||| |||||||    
T  11477 gtcgaatcgagttccaaactattatcgagttggttcggttcattg 11521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 246
Target Start/End: Original strand, 21084 - 21218
Alignment:
Q  111 tagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaacaagcaaattattgagtcg 210  Q
    ||||||||||| | || |||||||||| || ||||||||||| ||||||||| || | |  ||||||||||| ||||||||| |   |||||| || |||    
T  21084 tagctcaagttcaactcatttatttaatgagcttaattttcaactcaagttcgactc-tttggttcatgaaccaagttcaacgaatcaattatcgaatcg 21182  T
Q  211 agttccgaactatattcgatttggttcgcttcattg 246  Q
    |||  |||||||| ||||| |||||||| |||||||    
T  21183 agtctcgaactattttcgagttggttcggttcattg 21218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 73 - 247
Target Start/End: Complemental strand, 124663 - 124489
Alignment:
Q  73 tcaagtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccg 172  Q
    |||||||| ||||| |||||| ||| || || ||  ||||| |||| || |||| ||||| ||||| ||||||||  ||||||||||||| || | |  |    
T  124663 tcaagtcatctcatgaaccaaacgaatcgaaatatctatagttcaaattcagctcatttaattaacaaacttaataatcagctcaagttcgactcatttg 124564  T
Q  173 gttcatgaactaagttcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattgc 247  Q
    |||||||||| ||||||||    | |||| | ||||| | || |||||||||||||| |||||||| ||||||||    
T  124563 gttcatgaaccaagttcaatggaccaattgtcgagtcaaatttcgaactatattcgagttggttcggttcattgc 124489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0224 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 247
Target Start/End: Complemental strand, 7487 - 7316
Alignment:
Q  76 agtcaactcataaaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggtt 175  Q
    ||||| ||||| |||||| |||||| | ||| |||| | ||||||| |||| | ||| ||| |||||||||||||||||||||||||  | | |  ||||    
T  7487 agtcatctcatgaaccaaacgagtcgacctatatatggttcaagttcagctcaattagttagcgaacttaattttcagctcaagttcggctcatttggtt 7388  T
Q  176 catgaactaagttcaacaagcaaattattgagtcgagttccgaactatattcgatttggttcgcttcattgc 247  Q
    ||||||| |||||| || |   |||||| || |||| || |||||  || |||| |||||||| ||||||||    
T  7387 catgaaccaagttcgacgaatcaattatcgaatcgaattacgaacactaatcgaattggttcggttcattgc 7316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0444 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0444
Description:

Target: scaffold0444; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 111 - 192
Target Start/End: Complemental strand, 911 - 830
Alignment:
Q  111 tagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttcaacccgtccggttcatgaactaagttcaac 192  Q
    ||||||||||| | || ||||||||||||| ||||||||||| | ||| |||||| | |  ||||||||||| |||||||||    
T  911 tagctcaagttcaactcatttatttaacgagcttaattttcaacccaaattcaactcatttggttcatgaaccaagttcaac 830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0260 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 162
Target Start/End: Original strand, 11442 - 11516
Alignment:
Q  88 aaccaaccgagtcaaactacatatagctcaagttgagcttatttatttaacgaacttaattttcagctcaagttc 162  Q
    |||||| |||||| || || |||||| |||| || |||| ||||| ||||||||||||||||||| || ||||||    
T  11442 aaccaaacgagtcgaattatatatagttcaaattcagctcatttaattaacgaacttaattttcatctgaagttc 11516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University