View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19453_high_19 (Length: 320)
Name: NF19453_high_19
Description: NF19453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19453_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 2391647 - 2391358
Alignment:
| Q |
17 |
aaccctcaaaactaatcccatctccttctttcagcttcttctcagcttggaatcctatcttcacaaaagtctgagcagaaacatcagccttcaacaacct |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2391647 |
aaccctcaaaactaatcccatctccttctttcagcttcttctcagcttggaatcctatcttcacaaaagtctgagcagaaacatcagccttcaacaacct |
2391548 |
T |
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| Q |
117 |
gaaggaacctttttcattcgccttaggacccaacacagaagataacaatctctcaaaacccaacaagtttgcatttgatccattaagagaggcaagaggc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2391547 |
gaaggaacctttttcattcgccttaggacccaacacagaagataacaatctctcaaaacccaacaagtttgcatttgatccattaagagaggcaagaggc |
2391448 |
T |
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| Q |
217 |
cacaatgcggtaaactgggttggagtaaggagggtcggggcttcctcctggagatcaacggtagacagggaagtgtcaactaatttggat |
306 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2391447 |
cacaatgcggtaaactgggtaggagtaaggagggtcggggcttcctcctggagatcaacggtagacagggaagtgtcaactaatttggat |
2391358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 290
Target Start/End: Original strand, 56189612 - 56189885
Alignment:
| Q |
17 |
aaccctcaaaactaatcccatctccttctttcagcttcttctcagcttggaatcctatcttcacaaaagtctgagcagaaacatcagccttcaacaacct |
116 |
Q |
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||||||||||||||| ||||||||||| |||| ||||||||||||||| || |||||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
56189612 |
aaccctcaaaactaacaccatctccttccttcaacttcttctcagcttgaaagcctatctttacaaaagtctgagcagaaacatctgccttcaacaacct |
56189711 |
T |
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| Q |
117 |
gaaggaacctttttcattcgccttaggacccaacacagaagataacaatctctcaaaacccaacaagtttgcatttgatccattaagagaggcaagaggc |
216 |
Q |
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|||||||||||||| || |||||||| |||| |||||||||||||| | | ||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
56189712 |
aaaggaacctttttccttagccttagggcccagcacagaagataacagtttttcaaaacccaacaagtttgtatttgatccattaagggaggcaagaggc |
56189811 |
T |
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| Q |
217 |
cacaatgcggtaaactgggttggagtaaggagggtcggggcttcctcctggagatcaacggtagacagggaagt |
290 |
Q |
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|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
56189812 |
cacaatgcagtaaactgggttggagtaaggagagtcggggcttcctcctggagatcaacggtagacagggaagt |
56189885 |
T |
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