View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19453_high_20 (Length: 315)
Name: NF19453_high_20
Description: NF19453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19453_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 44919106 - 44918834
Alignment:
| Q |
1 |
gaaataaaattcattgactttttcattaaactaacaagttgatgtaaaaatcataggacttgttatcaggagaatgaattgtttaattacacaacacaat |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44919106 |
gaaataaaattcattgaccttttcattaaactaacaagttgatgtaaaaatcataggacttgttatcaggagaatgaattgtttaattacacaacacaat |
44919007 |
T |
|
| Q |
101 |
gacaataagtaaatttattttttaataagcagataataagtaatttgtaaaagcttgtttttcctccaaatgtaactatctataaactactcaactatca |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
44919006 |
gacaatcagtaaatttattttttaataagcagataataagtaatttgtaaaagctagtttttcctccaaatgtaactatctataaactact--------- |
44918916 |
T |
|
| Q |
201 |
atttcaccataagaattaagattaaatgagaatatagattactttggcatatgccaacgtaacttctttgtattttaagatatttttaa |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
44918915 |
-------cataagaattaagattaaatgagaatatagattactttggaatatgccaacgtaacttctttgtattttaagatatttttaa |
44918834 |
T |
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